BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT2G16430.2 Length=1550 Score E Sequences producing significant alignments: (Bits) Value Ahg906772 jgi|Araly1|906772|Al_scaffold_0003_3900 2124 0.0 > Ahg906772 jgi|Araly1|906772|Al_scaffold_0003_3900 Length=1428 Score = 2124 bits (1150), Expect = 0.0 Identities = 1340/1429 (94%), Gaps = 23/1429 (2%) Strand=Plus/Plus Query 61 ATGGGTCGTGTCCGAAAATCAGATTTCGGTTCCATTGTTCTTGTTCTGTGTTGTGTCCTA 120 ||||||||||||||||||||||||||| |||||| |||||||||||||||| |||||| Sbjct 1 ATGGGTCGTGTCCGAAAATCAGATTTCTTTTCCATAGTTCTTGTTCTGTGTTTTGTCCTC 60 Query 121 AATAGCTTACTCTGTAATGGAGGCATCACCAGTAGATATGTCAGAAAATTAGAAGCAACC 180 || |||||||||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 61 AACAGCTTACTCTGTAATGGAGGTATCACCAGTAGATATGTCAGAAAATTAGAAGCAACC 120 Query 181 GTTGATATGCCTCTTGATAGCGATGTTTTTCGTGTTCCTTGTGGCTACAATGCTCCTCAA 240 |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 121 GTTGATATGCCTCTTGATAGCGATGTTTTTCGTGTTCCTTGTGGTTACAATGCTCCTCAA 180 Query 241 CAGGTGCATATAACACAAGGAGATGTAGAAGGAAAGGCAGTGATAGTATCATGGGTGACA 300 |||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||| Sbjct 181 CAGGTGCATATAACACAAGGAGATGTAGAAGGGAAGGCAGTGATAGTATCATGGGTTACA 240 Query 301 CAAGAAGCAAAAGGATCTAACAAAGTCATTTACTGGAAAGAGAATAGCACCAAAAAGCAC 360 |||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||| Sbjct 241 CAAGAAGCAAAAGGATCTAACAAAGTCATTTACTGGAAAGAGAATAGCTCTAAAAAGCAC 300 Query 361 AAAGCTCATGGCAAAACCAATACTTACAAGTTCTACAATTATACTTCTGGTTTTATCCAT 420 |||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 301 AAAGCTTATGGCAAAACCAATACTTACAAGTTCTACAATTATACTTCTGGTTATATCCAT 360 Query 421 CATTGCCCTATCAG--A---A-A------------C---TTAGAGTATGACACCAAGTAC 459 |||||||| ||||| | | | | ||||||||||||||||||||| Sbjct 361 CATTGCCCCATCAGAAACTTAGAGGTTGTGGTTTTCTTATTAGAGTATGACACCAAGTAC 420 Query 460 TATTATGTGTTAGGTGTGGGACAAACGGAGCGTAAGTTTTGGTTCTTCACTCCTCCTGAG 519 ||||||||| |||||||||||||||| ||||||| ||| ||||||||||||||||||||| Sbjct 421 TATTATGTGGTAGGTGTGGGACAAACAGAGCGTATGTTCTGGTTCTTCACTCCTCCTGAG 480 Query 520 ATCGGTCCTGATGTTCCCTACACTTTTGGTCTCATTGGGGATCTTGGGCAGAGTTATGAC 579 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 481 ATCGGTCCTGATGTTCCCTACACTTTTGGTCTCATTGGGGATCTTGGGCAGAGTTATGAC 540 Query 580 TCAAACATAACCTTAACACATTATGAGAATAACCCAACAAAAGGGCAAGCGGTTTTGTTC 639 |||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||| Sbjct 541 TCAAACATAACCTTGACACATTATGAGAATAATCCAACAAAAGGGCAAGCGGTTTTGTTT 600 Query 640 GTCGGCGATATCTCATACGCTGATACTTATCCGGATCATGACAATAGGAGATGGGACAGT 699 |||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||| Sbjct 601 GTCGGCGATATCTCATACGCTGATACTTATCCAGATCATGACAATAGGAGATGGGATAGT 660 Query 700 TGGGGAAGATTTGCTGAAAGAAGCACAGCTTATCAGCCTTGGATTTGGACTACCGGAAAC 759 |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 661 TGGGGAAGATTTGCTGAAAGAAGCACAGCTTATCAGCCATGGATTTGGACTACCGGAAAC 720 Query 760 CATGAACTCGATTTTGCCCCGGAGATTGGTGAAAACAGACCGTTTAAGCCGTTCACGCAT 819 |||||||||||||||||||| |||||||| |||||||||||||||||||| ||||||||| Sbjct 721 CATGAACTCGATTTTGCCCCCGAGATTGGGGAAAACAGACCGTTTAAGCCATTCACGCAT 780 Query 820 AGGTACCGAACTCCTTACCGATCATCAGGCAGCACCGAACCATTCTGGTACTCGATAAAG 879 |||||||| |||||||||||||||||||||||||| |||||||||||||||||||| ||| Sbjct 781 AGGTACCGTACTCCTTACCGATCATCAGGCAGCACAGAACCATTCTGGTACTCGATTAAG 840 Query 880 AGAGGACCGGCTTACATAATCGTGCTAGCTTCATATTCAGCATATGGAAAATACACACCA 939 |||||| ||||||||||||||||| ||||||||||||||||||||||||||||||| || Sbjct 841 AGAGGATCGGCTTACATAATCGTGTTAGCTTCATATTCAGCATATGGAAAATACACTCCG 900 Query 940 CAGTACCAATGGCTCGAAGAGGAGTTCCCAAAGGTTAACAGAACGGAAACTCCGTGGTTG 999 || ||||||||||||||||||||||||||||| |||||||| |||||||||||||||||| Sbjct 901 CAATACCAATGGCTCGAAGAGGAGTTCCCAAAAGTTAACAGGACGGAAACTCCGTGGTTG 960 Query 1000 ATTGTTCTGATGCATTCACCATGGTACAACAGCTATGATTACCATTACATGGAAGGTGAA 1059 |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 961 ATTGTTCTGATGCATTCACCGTGGTACAACAGCTATGATTACCATTACATGGAAGGTGAA 1020 Query 1060 ACAATGAGGGTAATGTATGAGGCTTGGTTTGTCAAGTACAAAGTAGATGTAGTTTTTGCA 1119 || ||||| || ||||||||||| |||||||||||||||||||||||||| || |||||| Sbjct 1021 ACCATGAGAGTGATGTATGAGGCGTGGTTTGTCAAGTACAAAGTAGATGTTGTCTTTGCA 1080 Query 1120 GGTCATGTCCACGCCTACGAAAGATCGGAACGTGTATCAAACATAGCTTACAATGTTGTT 1179 ||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 1081 GGTCATGTCCATGCCTACGAAAGATCGGAACGTGTGTCAAACATAGCTTACAATGTTGTT 1140 Query 1180 AACGGCATTTGCACTCCAGTCAAAGATCAATCAGCTCCAGTCTATATCACCATTGGTGAT 1239 |||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||| Sbjct 1141 AACGGCATTTGCACTCCAGTCAAAGATCAATCTGCTCCAGTCTACATCACCATTGGTGAT 1200 Query 1240 GGAGGCAATATTGAGGGCTTGGCTACCAAAATGACTGAGCCTCAGCCTAAGTACTCTGCC 1299 ||||| ||| ||||||| ||||| |||||||||||||||||||||||||||||||||||| Sbjct 1201 GGAGGAAATCTTGAGGGATTGGCCACCAAAATGACTGAGCCTCAGCCTAAGTACTCTGCC 1260 Query 1300 TTTAGAGAAGCAAGCTTCGGGCATGCTATATTCTCGATAAAGAACAGGACGCATGCTCAC 1359 | ||||||||||||||||||||||| |||||||||||||||||||||||||| |||| | Sbjct 1261 TACAGAGAAGCAAGCTTCGGGCATGCGATATTCTCGATAAAGAACAGGACGCACGCTCGC 1320 Query 1360 TATGGATGGCATAGGAACCATGATGGTTATGCTGTGGAGGGTGACAGAATGTGGTTTTAT 1419 ||||||||||| ||||||||||||||||| || || ||||||||||| |||||||||| | Sbjct 1321 TATGGATGGCACAGGAACCATGATGGTTACGCCGTTGAGGGTGACAGGATGTGGTTTT-T 1379 Query 1420 -AACAGATTTTGGCATCCTGTTGATGATTCTCCTTCTTGTAATTCTTGA 1467 |||||||| ||||||||| |||||||||||||||| |||||||||||| Sbjct 1380 CAACAGATTCTGGCATCCTATTGATGATTCTCCTTCATGTAATTCTTGA 1428 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 58049533380 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5