BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G16500.1
Length=2718
Score E
Sequences producing significant alignments: (Bits) Value
Ahg931833 jgi|Araly1|931833|scaffold_304290.1 3240 0.0
Ahg491183 jgi|Araly1|491183|fgenesh2_kg.7__616__AT4G34710.1 1738 0.0
> Ahg931833 jgi|Araly1|931833|scaffold_304290.1
Length=2154
Score = 3240 bits (1754), Expect = 0.0
Identities = 2014/2137 (94%), Gaps = 28/2137 (1%)
Strand=Plus/Plus
Query 423 GAAGAAGAAGAAGATGCCTGCTCTAGCTTTTGTTGATACTCCCATCGATACCTTTTCCAG 482
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
Sbjct 12 GAAGAAGAAGAAGATGCCTGCTCTAGCTTTTGTTGATACTCCCATCGATACTTTTTCC-G 70
Query 483 TATCTTTACACCGTCGTCTGTTTCCACCGCCGT-TGTTGA-CGGTTCC--TG-CCATTGG 537
| ||||| | |||| ||| ||||| ||| || | || || || |||||
Sbjct 71 -GTGATTACA--G-CGTC--TTTACACCGTCGTCTG-CCACCGCCGCCATTGTTGATTGG 123
Query 538 TCTCCGTCCCTCTCCTCCTCTCTT-TACCGTATCGACGGATGGGGAGCTCCGTATTTCGC 596
|||||||| ||||||||||| || |||||||||||||||||||||||||||||||||||
Sbjct 124 TCTCCGTCGCTCTCCTCCTC-GTTGTACCGTATCGACGGATGGGGAGCTCCGTATTTCGC 182
Query 597 AGCGAATTCCTCCGGGAACATCTCTGTTCGTCCTCATGGCTCAAACACTTTACCTCACCA 656
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 183 CGCGAATACCTCCGGGAACATCTCTGTTCGTCCTCATGGCTCAAACACTTTACCTCACCA 242
Query 657 AGACATCGATCTGATGAAAGTTGTGAAGAAAGTTACAGATCCGAGTGGTTTAGGATTACA 716
|||||||||||| ||||| || ||||||||||| ||||||||||||||||||||||||||
Sbjct 243 AGACATCGATCTCATGAAGGTCGTGAAGAAAGTAACAGATCCGAGTGGTTTAGGATTACA 302
Query 717 GCTTCCGCTTATTGTTCGTTTCCCTGATGTTCTGAAGAATCGTCTTGAGTGTCTTCAATC 776
|||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 303 GCTTCCGCTTATCGTTCGTTTTCCTGATGTTCTGAAGAATCGTCTTGAGTGTCTTCAATC 362
Query 777 CGCGTTTGATTACGCGATTCAGAGTCAAGGATATGATTCTCATTACCAAGGTGTGTATCC 836
|||||||||||||||||||||||||||| |||| ||| ||||||||||||||||| ||
Sbjct 363 ATCGTTTGATTACGCGATTCAGAGTCAAGGCTATGGTTCACATTACCAAGGTGTGTACCC 422
Query 837 TGTGAAATGTAATCAAGATCGGTTTATCATCGAAGATATTGTCGAATTCGGATCCG-GTT 895
||||||||||||||||||||||||||| ||||||||||||||||||||||||| || |||
Sbjct 423 TGTGAAATGTAATCAAGATCGGTTTATTATCGAAGATATTGTCGAATTCGGAT-CGAGTT 481
Query 896 TTCGATTCGGTTTAGAAGCTGGTTCCAAGCCTGAGATTCTTCTTGCTATGAGTTGTTTGT 955
|||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 482 TTCGATTCGGATTAGAAGCTGGTTCGAAGCCTGAGATTCTTCTTGCTATGAGTTGTTTGT 541
Query 956 GTAAAGGTAATCCTGAAGCTTTTCTTGTGTGTAATGGTTTTAAAGACTCTGAGTATATCT 1015
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 542 GTAAAGGTAATCCTGAAGCTTTTCTTGTGTGTAATGGTTTTAAAGACTCTGAGTATATCT 601
Query 1016 CATTGGCTTTGTTTGGGAGGAAACTTGAATTGAATACTGTTATTGTTCTTGAGCAAGAAG 1075
||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||
Sbjct 602 CATTGGCTTTGTTTGGGAGGAAACTGGAATTGAATACTGTGATTGTTCTTGAGCAAGAAG 661
Query 1076 AAGAGCTTGATTTGGTTATTGATTTGAGCCAGAAGATGAATGTTAGGCCTGTTATTGGGT 1135
|||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||
Sbjct 662 AAGAGCTTGATTTGGTTATTGATTTGAGTCAGAAGATGAATGTTAGGCCTGTGATTGGGT 721
Query 1136 TAAGAGCTAAGCTTAGAACTAAACATTCTGGTCATTTTGGTTCTACTTCTGGTGAGAAGG 1195
||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||| |
Sbjct 722 TAAGAGCTAAGCTGAGAACGAAACATTCTGGTCATTTTGGTTCTACTTCTGGTGAGAAAG 781
Query 1196 GGAAGTTTGGTTTGACTACGGTTCAGATTCTTCGTGTGGTGAGGAAGCTGAGTCAAGTTG 1255
|||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||
Sbjct 782 GGAAGTTTGGTTTGACTACGATTCAGATTGTTCGTGTGGTGAGGAAGCTGAGTCAAGTTG 841
Query 1256 GTATGCTTGATTGTCTCCAGCTTCTGCATTTTCACATTGGTTCACAGATTCCGTCCACGG 1315
|||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||
Sbjct 842 GTATGCTTGATTGTCTTCAGCTTCTGCATTTTCACATTGGTTCTCAGATTCCGTCCACGG 901
Query 1316 CTTTGCTT-TCCGACGGTGTGGCTGAGGCTGCGCAGCTTTACTGTGAGCTTGTCCGTCTT 1374
||||| || ||||| ||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 902 CTTTG-TTGTCCGATGGTGTAGCTGAGGCTGCGCAGCTTTACTGTGAGCTTGTCCGTCTT 960
Query 1375 GGTGCTCATATGAAGGTGATTGATATTGGTGGTGGGTTGGGGATTGATTACGACGGGTCT 1434
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 961 GGTGCTCATATGAAGGTGATTGATATTGGTGGTGGATTGGGGATTGATTACGACGGGTCT 1020
Query 1435 AAATCGGGGGAGTCGGATCTCTCTGTTGCTTATAGTCTCGAGGAGTATGCTGCAGCTGTT 1494
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1021 AAATCGGGGGAGTCGGATCTCTCTGTTGCTTATAGTCTTGAGGAGTATGCTGCAGCTGTT 1080
Query 1495 GTGGCTTCGGTTAGGTTTGTTTGTGATCAGAAGTCTGTGAAGCATCCGGTGATTTGCAGC 1554
||||| |||||||||||||||||||||||||| |||||||||||||| ||||| ||||||
Sbjct 1081 GTGGCATCGGTTAGGTTTGTTTGTGATCAGAAATCTGTGAAGCATCCAGTGATATGCAGC 1140
Query 1555 GAGAGCGGTCGAGCCATTGTGTCTCATCACTCGGTGTTGATCTTTGAAGCTGTCTCAGCT 1614
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1141 GAGAGTGGTCGAGCCATTGTGTCTCATCACTCGGTGTTGATCTTTGAAGCTGTCTCAGCT 1200
Query 1615 GGTCAACAACATGAGACCCCTACTGATCATCA-GTTTATGCTTGAAGGGTACTCTGAGGA 1673
|||||||||||||| ||||| ||||||| | | ||||||||||||||||||||| |||||
Sbjct 1201 GGTCAACAACATGAAACCCCAACTGATC-TAAAGTTTATGCTTGAAGGGTACTCGGAGGA 1259
Query 1674 AGTTC-GAGGTGATTACGAGAATCTTTATGGTGCTGCTATGCGTGGTGATCGTGAAAGCT 1732
||| | || ||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1260 AGT-CAGAAATGATTACGAGAATCTTTATGGTGCTGCGATGCGTGGTGATCGTGAAAGCT 1318
Query 1733 GCTTGCTTTATGTTGATCAGCTGAAGCAGAGATGTGTTGAAGGGTTCAAAGAAGGTTCCT 1792
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1319 GCTTGCTTTATGTTGATCAGCTGAAGCAGAGATGTGTTGAAGGGTTCAAAGAAGGTTCCT 1378
Query 1793 TGGGCATTGAACAGTTAGCTGGTGTTGATGGATTATGCGAGTGGGTGATTAAGGCGATTG 1852
|| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1379 TGAGCATTGAACAGTTAGCTGGTGTTGATGGGTTATGCGAGTGGGTGATTAAGGCGATTG 1438
Query 1853 GTGCATCGGATCCGGTTCTTACTTACCATGTCAATCTATCGGTTTTCACTTCGATTCCTG 1912
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1439 GCGCATCGGATCCGGTTCTTACTTACCATGTCAATCTATCGGTTTTCACTTCGATTCCGG 1498
Query 1913 ATTTCTGGGGGATTGATCAGCTGTTTCCTATTGTTCCAATCCATAAACTTGACCAAAGGC 1972
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1499 ATTTCTGGGGGATTGATCAGCTGTTTCCTATAGTTCCAATCCATAAACTTGACCAAAGGC 1558
Query 1973 CTGCCGCGAGAGGGATCTTATCGGATTTGACGTGTGACAGCGACGGAAAGATCAACAAGT 2032
||| |||||||||||||||||| |||||||| || |||||||||||||||||||||||||
Sbjct 1559 CTGTCGCGAGAGGGATCTTATCAGATTTGACTTGCGACAGCGACGGAAAGATCAACAAGT 1618
Query 2033 TCATAGGCGGAGAATCGAGCTTGCCATTGCACGAGATGGACAACAATGGCTGCAGCGGTG 2092
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
Sbjct 1619 TCATAGGCGGAGAATCGAGCTTGCCATTGCACGAGCTGGACAACAATGGCTGCAGCGGCG 1678
Query 2093 GGCGGTACTATTTGGGAATGTTCCTAGGTGGAGCTTATGAGGAAGCTCTCGGTGGAGTCC 2152
|| | ||||||||||||||||||||||||||||||||||| || ||||||||||||||||
Sbjct 1679 GGAGATACTATTTGGGAATGTTCCTAGGTGGAGCTTATGAAGAGGCTCTCGGTGGAGTCC 1738
Query 2153 ACAATCTGTTCGGTGGACCAAGCGTGGTTCGCGTATTGCAGAGCGATGGACCTCACGGAT 2212
||||||||||||| |||||||||||||| ||||| |||||||| ||||||||||||||||
Sbjct 1739 ACAATCTGTTCGGAGGACCAAGCGTGGTCCGCGTCTTGCAGAGTGATGGACCTCACGGAT 1798
Query 2213 TCGCAGTGACCCGTGCTGTGATGGGCCAATCCTCTGCAGATGTCCTCAGAGCAATGCAGC 2272
|||||||||||| |||||||||||| ||||||||||| ||||||||||||||||||||||
Sbjct 1799 TCGCAGTGACCCATGCTGTGATGGGTCAATCCTCTGCGGATGTCCTCAGAGCAATGCAGC 1858
Query 2273 ATGAGCCTGAGCTCATGTTTCAGACTCTTAAACACCGAGCCGAGGAGCCGAGGAACAACA 2332
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1859 ATGAGCCTGAGCTCATGTTTCAGACTCTTAAACACCGAGCCGAGGAGCAGAGGAACAACA 1918
Query 2333 ACAACAAAGCTTGTGGTGATAAGGGGAACGACAAACTAGTAGTCGCATCGTGTCTTGCTA 2392
||||||||||| ||||||||||||| || ||||||||||||||||||||||||||||||
Sbjct 1919 ACAACAAAGCTGGTGGTGATAAGGGAAATGACAAACTAGTAGTCGCATCGTGTCTTGCTC 1978
Query 2393 AGT-CATTCAACAACATGCCTTATCTTTCCATGGAAACGTCAACAAACGCTCTCACCGCA 2451
|| ||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||
Sbjct 1979 -GTTCATTCAACAACATGCCTTATCTTTCCATGGAAACGTCCACAAACGCTCTCATCGCA 2037
Query 2452 GCGGTCAATAACCTTGGCGTTTACTACTGCGATGAAGCTGCAGCTGGTGGCGGCGGCA-- 2509
||| |||||||||| |||||||||||| |||||||||||||||||||||||||||||
Sbjct 2038 GCGATCAATAACCTCGGCGTTTACTACCGCGATGAAGCTGCAGCTGGTGGCGGCGGCGGC 2097
Query 2510 AGGG-CAAAGATGAGAATTGGTCTTATTTCGGTTGAT 2545
|||| ||| |||||||| ||||||||||| |||||||
Sbjct 2098 AGGGGCAAGGATGAGAAATGGTCTTATTTTGGTTGAT 2134
> Ahg491183 jgi|Araly1|491183|fgenesh2_kg.7__616__AT4G34710.1
Length=2639
Score = 1738 bits (941), Expect = 0.0
Identities = 1556/1847 (84%), Gaps = 65/1847 (4%)
Strand=Plus/Plus
Query 509 CCGCCGTTGTTGACGGTTCCTGCCATTGGTCT-CCGTCCCTCTCCTCCTCTCTTTACCGT 567
|||||||||| ||| | || |||| ||||||| || || ||||| || ||||| || ||
Sbjct 604 CCGCCGTTGTGGACAGCTCTTGCCGTTGGTCTACC-TCTCTCTCATCGTCTCTCTATCGA 662
Query 568 ATCGACGGATGGGGAGCTCCGTATTTCGCAGCGAATTCCTCCGGGAACATCTCTGTTCGT 627
||||| |||||||||||||| |||||| ||| ||||| || || |||||||||||||||
Sbjct 663 ATCGATGGATGGGGAGCTCCTTATTTCATAGCCAATTCATCTGGTAACATCTCTGTTCGT 722
Query 628 CCTCATGGCTC-AAACACTTTACCTCACCAAGACATCGATCTGATGAAAGTTGTGAAGAA 686
||||||||||| || |||||||||||||||||||||||| || | ||| | || |||||
Sbjct 723 CCTCATGGCTCTGAA-ACTTTACCTCACCAAGACATCGATTTGCTCAAAATCGTTAAGAA 781
Query 687 AGTTACAGATCCG--A-------GTGGTTTAGGATTACAGCTTCCGCTT-ATTGTTCGTT 736
|| || |||||| | ||||||| ||||| ||||| ||| || || |||||||
Sbjct 782 GGTGACGGATCCGAAATCCTCCGGTGGTTTGGGATTGCAGCTCCCG-TTAATCGTTCGTT 840
Query 737 TCCCTGATGT-TCTGAAGAATCGTCTTGAGTGTCTTCAATCCGCGTTTGATTACGCGATT 795
|||||||||| | ||||||| ||||| |||||||||||||| |||||||||| ||| | |
Sbjct 841 TCCCTGATGTAT-TGAAGAACCGTCTCGAGTGTCTTCAATCTGCGTTTGATTTCGCCA-T 898
Query 796 C-AGAGTCAAGGATATGATTCTCATTACCAAGGTGTGTATCCTGTGAAATGTAATCAAGA 854
| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 899 CAAGAGTCAAGGATATGATTCTCATTACCAAGGTGTTTATCCTGTGAAATGTAATCAAGA 958
Query 855 TCGGTTTATCATCGAAGATATTGTCGAA-TTCGGATC--CGGTTTTCGATTCGGTTTAGA 911
||| || | | |||||||||||| || || ||||| | | ||||| || || |||||
Sbjct 959 TCGATTCGTTGTTGAAGATATTGTC-AAGTTTGGATCTTC-G-TTTCGGTTTGGATTAGA 1015
Query 912 AGCTGGTTCCAAGCCTGAGATTCTTCTTGCTATGAGTTGTTTGTGTAAAGGTAATCCTGA 971
|||||||||||| |||||||| ||||| |||||||| || ||||||||||||||||||||
Sbjct 1016 AGCTGGTTCCAAACCTGAGATCCTTCTCGCTATGAGCTGCTTGTGTAAAGGTAATCCTGA 1075
Query 972 AGCTTTTCTTGTGTGTAATGGTTTTAAAGACTCTGAGTATATCTCATTGGCTTTGTTTGG 1031
|| ||||||||||||||||| || |||||| |||||||||| || |||||| || ||||
Sbjct 1076 TGCCTTTCTTGTGTGTAATGGATTCAAAGACGCTGAGTATATATCCTTGGCTCTGCTTGG 1135
Query 1032 GAGGAAACTTGAATTGAATACTGTTATTGTTCTTGAGCAAGAAGAAGAGCTTGATTTGGT 1091
||| ||||| | ||||||||||| ||||| |||||||||||||||||||||||||||||
Sbjct 1136 GAGAAAACTGGCGTTGAATACTGTGATTGTGCTTGAGCAAGAAGAAGAGCTTGATTTGGT 1195
Query 1092 TATTGATTTGAGCCAGAAGATGAATGTTAGGCCTGTTATTGGGTTAAGAGCTAAGCTTAG 1151
||||||||||||||||||||||||||| |||||||| ||||||||||| |||||||| ||
Sbjct 1196 TATTGATTTGAGCCAGAAGATGAATGTGAGGCCTGTCATTGGGTTAAGGGCTAAGCTGAG 1255
Query 1152 AACTAAACATTCTGGTCATTTTGGTTCTACTTCTGGTGAGAAGGGGAAGTTTGGTTTGAC 1211
||||| ||||| |||||||| || || ||||||||||| ||||| || ||||| |||||
Sbjct 1256 GACTAAGCATTCGGGTCATTTCGGATCAACTTCTGGTGAAAAGGGCAAATTTGGATTGAC 1315
Query 1212 TACGGTTCAGATTCTTCGTGTGGTGAGGAAGCTGAGTCAAGT-TGGTATGCTTGATTGTC 1270
||| ||||||| |||||||| ||||||||||||| ||| | |||||||||||||||||
Sbjct 1316 TACTACTCAGATTGTTCGTGTGTTGAGGAAGCTGAGCCAA-TCTGGTATGCTTGATTGTC 1374
Query 1271 TCCAGCTTCTGCATTTTCACATTGGTTCACAGATTCCGTCCACGGCTTTGCTTTCCGACG 1330
|||||||| |||||||||| ||||| |||||||||||||| || | ||||| || || |
Sbjct 1375 TCCAGCTTTTGCATTTTCATATTGGGTCACAGATTCCGTCGACTTCGTTGCTCTCTGATG 1434
Query 1331 GTGTGGCTGAGGCTGCGCAGCTTTACTGTGAGCTTGTCCGTCTTGGTGCTCATATGAAGG 1390
|||| || |||||||| |||||||||||||| ||||| ||||||||||| |||||||| |
Sbjct 1435 GTGTCGCCGAGGCTGCTCAGCTTTACTGTGAACTTGTGCGTCTTGGTGCACATATGAAAG 1494
Query 1391 TGATTGATATTGGTGGTGGGTTGGGGATTGATTACGACGGGTCTAAATCGGGGGAGTCGG 1450
| ||||||||||||||||| ||||||||||| ||||| |||||||| || || || ||||
Sbjct 1495 TTATTGATATTGGTGGTGGTTTGGGGATTGACTACGATGGGTCTAAGTCTGGAGAATCGG 1554
Query 1451 ATCTCTCTGTTGCTTATAGTCTCGAGGAGTATGCTGCAGCTGTTGTGGCTTCGGTTAGGT 1510
||||||||||||||||||| |||||||||||||||| ||||||||| ||||| ||| |||
Sbjct 1555 ATCTCTCTGTTGCTTATAGCCTCGAGGAGTATGCTGAAGCTGTTGTAGCTTCTGTTCGGT 1614
Query 1511 TTGTTTGTGATCAGAAG-TCTGTGAAGCATCCGGTGATTTGCAGCGAGAGCGGTCGAGCC 1569
|||||||||| ||| || || ||||| ||||||||||| |||||||| |||||| ||||
Sbjct 1615 TTGTTTGTGA-CAGGAGGTCAGTGAAACATCCGGTGATATGCAGCGAAAGCGGTAGAGCG 1673
Query 1570 ATTGTGTCTCATCACTCGGTGTTGATCTTTGAAGCTGTCTCAGCTGGTCAA-C-AA---- 1623
|| || |||||||| || |||||||||||||||||||| ||||| ||| || | ||
Sbjct 1674 ATAGTCTCTCATCATTCTGTGTTGATCTTTGAAGCTGTTTCAGC-GGTTAAACCAATGGT 1732
Query 1624 -CATGA-G--ACCCCT-ACTGATCAT-CAGTTTATGCTTGAAGGGTACTCTGAGGAAGTT 1677
||| | | || ||| | ||| || ||||| |||| ||||| || | ||||||| |
Sbjct 1733 GCATCAAGCGACTCCTGAG-GAT-ATTCAGTTCCTGCTCGAAGG-TAAT--GAGGAAGCT 1787
Query 1678 CGAGGTGATTACGAGAATCTTTATGGTGCTGCT-ATGCGTGGTGATCGTGAAAGCTGCTT 1736
|||| |||| ||| ||||||| | ||||| | |||||||| || | || |||||| |
Sbjct 1788 CGAGCCAATTATGAGGATCTTTACGCTGCTG-TGATGCGTGGAGACCACGAGAGCTGCCT 1846
Query 1737 GCTTTATGTTGATCAGCTGAAGCAGAGATGTGTTGAAGGGTTCAAAGAAGGT-TCCTTGG 1795
|||||||| ||||||||||||||||| ||||||||||| |||||||||||| | |||
Sbjct 1847 CCTTTATGTCGATCAGCTGAAGCAGAGGTGTGTTGAAGGTTTCAAAGAAGGTGTT-TTGA 1905
Query 1796 GCATTGAACAGTTAGCTGGTGTTGATGGATTATGCGAGTGGGTGATT-AAGGCGATTGGT 1854
|||| || || |||||| ||||||||| ||||||||||||||| || ||||| || |||
Sbjct 1906 GCATCGAGCAATTAGCTTCTGTTGATGGGTTATGCGAGTGGGTG-TTGAAGGCTATAGGT 1964
Query 1855 GCATCGGATCCGGTTCTTACTTACCATGTCAATCTATCGGTTTTCACTTCGATTCCTGAT 1914
|||||||||||||||| |||||| || ||||||||||||||||||||||||||||||||
Sbjct 1965 GCATCGGATCCGGTTCACACTTACAATATCAATCTATCGGTTTTCACTTCGATTCCTGAT 2024
Query 1915 TTCTGGGGGATTGATCAGCTGTTTCCTATTGTTCCAATCCATAAACTTGACCAAAGGCCT 1974
|||||||||||||||||||||||||||| ||||| |||||||| || || ||||||||
Sbjct 2025 CTCTGGGGGATTGATCAGCTGTTTCCTATAGTTCCTATCCATAAGCTCGATCAAAGGCCC 2084
Query 1975 GCCGCGAGAGGGATCTTATCGGATTTGACGTGTGACAGCGACGGAAAGATCAACAAGTTC 2034
| || | || |||||||||||||| || || |||||||| || |||||||||||||||
Sbjct 2085 GGGGCTCGTGGAATCTTATCGGATTTAACATGCGACAGCGATGGGAAGATCAACAAGTTC 2144
Query 2035 ATAGGCGGAGAATCGAGCTTGCCATTGCACGAGATGGACAACAATGGCTGCAGCGGTGGG 2094
|||||||| ||||| |||||||| ||||| ||| |||||||||||||| | | || |||
Sbjct 2145 ATAGGCGGCGAATCCAGCTTGCCGTTGCATGAGCTGGACAACAATGGC-G--GTGGAGGG 2201
Query 2095 CGGTACTATT-TGGGAATGTTCCTAGGTGGAGCTTATGAGGAAGCTCTCGGTGGAGTCCA 2153
|||| || |||| |||||||| || || ||||| ||||| |||||||||||||||||
Sbjct 2202 ---TACT-TTCTGGGTATGTTCCTTGGAGGGGCTTACGAGGAGGCTCTCGGTGGAGTCCA 2257
Query 2154 CAATCTGTTCGGTGGACCAAGCGTGGTTCGCGTATTGCAGAGCGATGGACCTCACGGATT 2213
||||||||| ||||| |||||||| || || || | ||||||||||||||| ||| | ||
Sbjct 2258 CAATCTGTTTGGTGGGCCAAGCGTTGTCCGGGTCTCGCAGAGCGATGGACCACACAGCTT 2317
Query 2214 CGCAGTGACCCGTGCTGTGA-TGGGCCAATCCTCTGCAGATGTCCTCAGAGCAATGCAGC 2272
|||||||| || || ||| ||| | | ||||| || ||||| ||| ||||||||||||
Sbjct 2318 TGCAGTGACGCGAGCCGTGCCTGGTC-AGTCCTCAGCTGATGTTCTCCGAGCAATGCAGC 2376
Query 2273 ATGAGCCTGAGCTCATGTTTCAGACTCTTAAA-CACCGAGCCGAGGA 2318
||||||||||||| ||||||||||| || ||| |||||||| |||||
Sbjct 2377 ATGAGCCTGAGCTAATGTTTCAGACCCT-AAAGCACCGAGCAGAGGA 2422
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 102538939540
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5