BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT2G16720.1 Length=980 Score E Sequences producing significant alignments: (Bits) Value Ahg931500 jgi|Araly1|931500|scaffold_303957.1 1345 0.0 Ahg472503 jgi|Araly1|472503|fgenesh2_kg.1__2457__AT1G22640.1 292 2e-78 Ahg489795 jgi|Araly1|489795|fgenesh2_kg.6__2929__AT4G09460.1 246 2e-64 Ahg472077 jgi|Araly1|472077|fgenesh2_kg.1__2031__AT1G18570.1 132 6e-30 Ahg492740 jgi|Araly1|492740|fgenesh2_kg.7__2173__AT4G21440.1 130 2e-29 Ahg492106 jgi|Araly1|492106|fgenesh2_kg.7__1539__AT4G26930.1 100 2e-20 Ahg477416 jgi|Araly1|477416|fgenesh2_kg.3__117__AT3G01140.1 65.8 6e-10 > Ahg931500 jgi|Araly1|931500|scaffold_303957.1 Length=860 Score = 1345 bits (728), Expect = 0.0 Identities = 807/846 (95%), Gaps = 2/846 (0%) Strand=Plus/Plus Query 4 CATCATCATCATCAGAAGAAGAGAGTC-ATGGGAAGATCTCCTTGCTGCGAGAAAGAACA 62 ||||||||||| |||||||||||| | |||||||||||||||||||||||||||||||| Sbjct 4 CATCATCATCAGAAGAAGAAGAGAG-CTATGGGAAGATCTCCTTGCTGCGAGAAAGAACA 62 Query 63 CATGAACAAAGGTGCTTGGACTAAAGAAGAAGATGAGAGACTAGTCTCTTACATCAAGTC 122 ||||||||||||||||||||||||||||||||| |||||||| |||||||| |||||||| Sbjct 63 CATGAACAAAGGTGCTTGGACTAAAGAAGAAGACGAGAGACTCGTCTCTTATATCAAGTC 122 Query 123 TCACGGTGAAGGTTGTTGGCGATCTCTTCCTAGAGCCGCTGGTCTCCTTCGCTGCGGTAA 182 |||||||||||||||||||||||||||||||||||||||||||||||| || |||||||| Sbjct 123 TCACGGTGAAGGTTGTTGGCGATCTCTTCCTAGAGCCGCTGGTCTCCTCCGTTGCGGTAA 182 Query 183 AAGCTGCCGTCTTCGGTGGATTAACTATCTCCGACCTGATCTCAAAAGAGGAAACTTTAC 242 |||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 183 AAGCTGTCGTCTCCGGTGGATTAACTATCTCCGACCTGATCTCAAAAGAGGAAACTTTAC 242 Query 243 ACATGATGAAGATGAACTTATCATCAAGCTTCATAGCCTCCTAGGCAACAAGTGGTCTTT 302 |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 243 ACATGATGAAGATGAACTTATCATCAAGCTTCATAGCCTCCTTGGCAACAAGTGGTCTTT 302 Query 303 GATTGCGGCGAGATTACCTGGAAGAACAGATAACGAGATCAAGAACTACTGGAACACACA 362 |||||||||||||||||||||||||||||||| ||||||||||| |||||||| ||||| Sbjct 303 AATTGCGGCGAGATTACCTGGAAGAACAGATAATGAGATCAAGAATTACTGGAATACACA 362 Query 363 TATAAAGAGGAAGCTTTTGAGCAAAGGGATTGATCCAGCCACTCATAGAGGGATCAACGA 422 |||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||| Sbjct 363 TATAAAGAGGAAGCTTTTGAGCAAAGGGATTGATCCAGCCACGCATAGAGCGATCAACGA 422 Query 423 GGCAAAAATTTCTGATTTGAAGAAAACAAAGGACCAAATTGTAAAAGATGTTTCTTTTGT 482 ||| |||||| |||||| |||||||||| ||||||||||||||||||||||||||||||| Sbjct 423 GGCGAAAATTCCTGATTCGAAGAAAACAGAGGACCAAATTGTAAAAGATGTTTCTTTTGT 482 Query 483 GACAAAGTTTGAGGAAACAGACAAGTCTGGGGACCAGAAGCAAAATAAGTATATTCGAAA 542 | ||||||||||| ||||||| |||||||||||| |||||||||||||| ||||| |||| Sbjct 483 GTCAAAGTTTGAGAAAACAGAAAAGTCTGGGGACAAGAAGCAAAATAAGCATATTAGAAA 542 Query 543 TGGGTTAGTTTGCAAAGAAGAGAGAGTTGTTGTTGAAGAAAAAATAGGCCCAGATTTGAA 602 ||||||||| |||||||||||||||||||||||||||||||| ||| | ||||||||||| Sbjct 543 TGGGTTAGTGTGCAAAGAAGAGAGAGTTGTTGTTGAAGAAAATATATGTCCAGATTTGAA 602 Query 603 TCTTGAGCTTAGGATCAGTCCACCATGGCAAAACCAGAGAGAAATATCTACTTGCACTGC 662 ||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||| Sbjct 603 TCTTGAGCTTAGGATCAGTCCTCCATGGCAAAACCAGAGAGAAATATCTTCTTGCACTGC 662 Query 663 GTCCCGTTTTTACATGGAAAACGACATGGAGTGTAGTAGTGAAACTGTGAAATGTCAAAC 722 |||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 663 GTCCCGTTTTTATATGGAAAACGGCATGGAGTGTAGTAGTGAAACTGTGAAATGTCAAAC 722 Query 723 AGAGAATAGTAGCAGCATTAGCTATTCTTCTATTGATATTAGTAGTAGTAACGTTGGTTA 782 |||| ||||||| ||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 723 AGAGGATAGTAGTAGCATTAGCTATTCTTCTATTGATATTAGTAGTAGCAACGTTGGTTA 782 Query 783 TGACTTCTTGGGTTTGAAGACAAGAATTTTGGATTTTCGAAGCTTGGAAATGAAATAAAT 842 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 783 TGACTTCTTGGGTTTGAAGACAAGAATTTTGGATTTTCGAAGCTTGGAAATGAAATAAAT 842 Query 843 GAATAG 848 |||||| Sbjct 843 GAATAG 848 > Ahg472503 jgi|Araly1|472503|fgenesh2_kg.1__2457__AT1G22640.1 Length=980 Score = 292 bits (158), Expect = 2e-78 Identities = 323/401 (81%), Gaps = 18/401 (4%) Strand=Plus/Plus Query 31 ATGGGAAGATCTCCTTGCTGCGAGAAAGAACACATGAACAAAGGTGCTTGGACTAAAGAA 90 ||||||||||| || ||||||||||||| |||||||||||||| ||||||||||||||| Sbjct 84 ATGGGAAGATCACCATGCTGCGAGAAAGCTCACATGAACAAAGGAGCTTGGACTAAAGAA 143 Query 91 GAAGATGAGAGACTAGTCT-CTTACATCAAGT-CTCACGGTGAAGGTTGTTGGCGATCTC 148 |||||| || || || | ||||||| || |||||||||||||| |||||||||| Sbjct 144 GAAGATCAGCTTCTCGT-TGATTACATC-CGTAAACACGGTGAAGGTTGCTGGCGATCTC 201 Query 149 TTCCTAGAGCCGCTGG-TCTCCTTCGCTGCGGTAAAAGCTGCCGTCTTCG-G-TGGATTA 205 | ||| | ||||| || | | | | || ||||| || || | || | | ||||| | Sbjct 202 TCCCTCGCGCCGCCGGAT-TACAGAGATGTGGTAAGAGTTGTAG-ATT-GAGATGGATGA 258 Query 206 ACTATCTCCGACCTGATCTCAAAAGAGGAAACTTTACAC--ATGATGAAGATGAACTTAT 263 | ||||| |||| |||||||||||||| || ||| ||| | || ||||||||||| || Sbjct 259 ATTATCTAAGACCAGATCTCAAAAGAGGCAA-TTT-CACTGAAGAAGAAGATGAACTCAT 316 Query 264 CATCAAGCTTCATAGCCTCCTAGGCAACAAGTGGTCTTTGATTGC-GGCGAGATTACCTG 322 ||||||||| |||||| | || || ||||| |||||||| || || || ||||||||| | Sbjct 317 CATCAAGCTCCATAGCTTGCTTGGTAACAAATGGTCTTTAATAGCTGG-GAGATTACCAG 375 Query 323 GAAGAACAGATAACGAGATCAAGAACTACTGGAACACACATATAAAGAGGAAGCTT-TTG 381 |||||||||||||||||||||||||||| |||||||| ||||| |||||||||||| || Sbjct 376 GAAGAACAGATAACGAGATCAAGAACTATTGGAACACTCATATCAAGAGGAAGCTTCTT- 434 Query 382 AGCAAAGGGATTGATCCAGCCACTCATAGAGGGATCAACGA 422 ||| |||||||||||| ||||||| | ||||||||| Sbjct 435 AGCCGTGGGATTGATCCAAACACTCATCGTCTGATCAACGA 475 > Ahg489795 jgi|Araly1|489795|fgenesh2_kg.6__2929__AT4G09460.1 Length=850 Score = 246 bits (133), Expect = 2e-64 Identities = 302/381 (79%), Gaps = 22/381 (6%) Strand=Plus/Plus Query 30 CATGGGAAGATCTCCTTGCTGCGAGAAAGAACACATGAACAAAGGTGCTTGGACTAAAGA 89 |||||||||||||||||| || || |||| |||| |||||||| |||||||||||||| Sbjct 46 CATGGGAAGATCTCCTTGTTGTGAAAAAGCTCACACAAACAAAGGAGCTTGGACTAAAGA 105 Query 90 AGAAGATGAGA-GACTAGTCTCTTACA-TCAAGT-CTCACGGTGAAGGTTGTTGGCGATC 146 ||||||| | | | || ||| ||| | || || |||||||||||||||||||||||| Sbjct 106 AGAAGATCA-ACGTCTCGTCGATTATATTC--GTAATCACGGTGAAGGTTGTTGGCGATC 162 Query 147 TCTTCCTAGAGCCGCTGG-TCTCCTT-CGCTGCGGTAAAAGCTGCCGTCTTCG-G-TGGA 202 |||||||| | ||||||| | | || || || |||||||| || | || | | |||| Sbjct 163 TCTTCCTAAATCCGCTGGAT-TG-TTGCGTTGTGGTAAAAGTTGTAGA-TT-GAGATGGA 218 Query 203 TTAACTATCTCCGACCTGATCTCAAAAGAGGAAACTTTACACATGATGAAGATGAACTTA 262 |||| || || || |||||||| ||| | || || ||||| |||| |||||| || | | Sbjct 219 TTAATTACCTTCGTCCTGATCTTAAACGTGGTAATTTTACTGATGAAGAAGATCAAATCA 278 Query 263 TCATCAAGCTTCATAGCCTCCTAGGCAACAAGTGGTCTTTGATTGCGGCGA-GATTACCT 321 ||||||| || |||||| | || || ||||| ||||| ||||| || | || ||||||| Sbjct 279 TCATCAAACTCCATAGCTTACTCGGTAACAAATGGTCATTGATAGCTG-GAAGATTACCA 337 Query 322 GGAAGAACAGATAACGAGATCAAGAACTACTGGAACACACATAT-AAAGAGGAAGCTT-T 379 |||||||||||||| || |||||||| || |||||||| ||||| ||| || |||||| | Sbjct 338 GGAAGAACAGATAATGAAATCAAGAATTATTGGAACACTCATATTAAA-AGAAAGCTTCT 396 Query 380 TGAG-CAAAGGGATTGATCCA 399 | || || |||||||||||| Sbjct 397 T-AGTCAT-GGGATTGATCCA 415 > Ahg472077 jgi|Araly1|472077|fgenesh2_kg.1__2031__AT1G18570.1 Length=1467 Score = 132 bits (71), Expect = 6e-30 Identities = 255/341 (75%), Gaps = 24/341 (7%) Strand=Plus/Plus Query 70 AAAGGTGCTTGGACTAAAGAAGAAGATGAG-AGACTAGTCTCTTACATCAAGTC-TCACG 127 ||||| ||||||||| || |||||| || || || |||||||| |||| | ||||| Sbjct 281 AAAGGAGCTTGGACTCCCGAGGAAGATCAGAAG-CTTCTCTCTTACCTCAA-CCGTCACG 338 Query 128 GTGAAGGTTGTTGGCGATCTCTTCCTAG-AGCCGCTGGTCTCCTTCGCTGCGGTAAAAGC 186 |||||||| | |||||| ||| ||| | | ||||| ||| | ||||| |||||| Sbjct 339 GTGAAGGTGGATGGCGAACTC-TCCCCGAAAAAGCTGGACTCAAGAGGTGCGGCAAAAGC 397 Query 187 TGCCGTCTTCGGTGGATTAACTATCTCCGACCTGATC-TCAAAAGAGGAAACTTTACACA 245 ||| | || | ||| ||| ||||| ||||||| | ||||||||||| | || || | Sbjct 398 TGCAGACTGAGATGGGCTAATTATCTTAGACCTGA-CATCAAAAGAGGAGAGTTCACTGA 456 Query 246 TGATGAAG-ATGAACTTATCATCAAGCTTCATAG-CCTCCTA-GGCAACAAGTGGT-CTT 301 || |||| ||| | ||||||| ||||| | ||| | | |||||||| |||| | Sbjct 457 AGACGAAGAATGTTC-TATCATCTCTCTTCA-CGCCCTTC-ACGGCAACAAATGGTCCGC 513 Query 302 TGATTGCGGCG-AGATTACCTGGAAGAACAGATAACGAGATCAAGAACTACTGGAACACA 360 | || || || ||||||| |||||||| ||||||||||||||||||||||||||||| Sbjct 514 T-ATAGC-TCGTGGATTACCAGGAAGAACCGATAACGAGATCAAGAACTACTGGAACACT 571 Query 361 CATATAAAGAGGAA-GCTT--TTGAGCAAAGGGATTGATCC 398 ||||| |||| || | || || || ||||| |||||||| Sbjct 572 CATATCAAGA--AACGTTTGATTAAG-AAAGGTATTGATCC 609 > Ahg492740 jgi|Araly1|492740|fgenesh2_kg.7__2173__AT4G21440.1 Length=1186 Score = 130 bits (70), Expect = 2e-29 Identities = 174/221 (79%), Gaps = 20/221 (9%) Strand=Plus/Plus Query 197 GGTGGATTAACTATCTCCGACCTGATCTCAAA-AGAGGAAACTTTACAC-AT-GATGAAG 253 |||||| ||| ||||||||||| ||| | ||| |||| || || | | | || |||| Sbjct 262 GGTGGACTAATTATCTCCGACCAGATAT-AAAGCGAGG-AAGGTT-CTCTTTCGAGGAAG 318 Query 254 ATG-AA-C-TTATCATCAAGCTTCATAGCCTCCTAGGCAACAAGTGGTCTTTGATTGCGG 310 | | || | |||| || ||||||||||| || |||| ||||||||||| |||||||| Sbjct 319 AAGAAACCATTAT--TC-AGCTTCATAGCTTCTTAGGAAACAAGTGGTCGGCGATTGCGG 375 Query 311 CGAGATTACCTGGAAGAACAGATAACGAGATCAAGAACTACTGGAACACACATATAA-AG 369 | | || ||||||||||||||||||||||||||||||| ||||||||| ||||||| | Sbjct 376 CCCGTTTGCCTGGAAGAACAGATAACGAGATCAAGAACTTCTGGAACACTCATATAAGAA 435 Query 370 AGGAAGCTT--TTGAGCAAAGGG-ATTGATCCAGCCACTCA 407 || ||| || || || || ||| |||||||||| ||||| Sbjct 436 AG-AAG-TTACTT-AG-AATGGGGATTGATCCAGTGACTCA 472 > Ahg492106 jgi|Araly1|492106|fgenesh2_kg.7__1539__AT4G26930.1 Length=1149 Score = 100 bits (54), Expect = 2e-20 Identities = 151/196 (77%), Gaps = 14/196 (7%) Strand=Plus/Plus Query 171 TCGCTGCGGTAAAAGCTGCCGTCTTCGGTGGATTAACTATCTCCGACCTGATCTCA-AAA 229 ||| |||||||| |||||||| || || ||| |||| | ||||||||| |||||| || Sbjct 162 TCGGTGCGGTAAGAGCTGCCGCCTCCGCTGGGCTAACCACCTCCGACCTAATCTCAGGAA 221 Query 230 GAGGAAACTTTACACATGATGAAG-ATGAACTTATCAT-CAAGCTTCATAGCCTC--CTA 285 ||| ||| || | ||| |||| | | || ||||| ||| || ||| ||| || Sbjct 222 -AGGCTCCTTCACCCCTGAGGAAGAACG-TCTCATCATACAA-CTCCAT--TCTCAGCTC 276 Query 286 GGCAACAAGTGGTCTTTG-ATTGCGGC-GAGATTACCTGGAAGAACAGATAACGAGATCA 343 |||||||| ||| | | | || || || || ||||| |||||||||||||||||||||| Sbjct 277 GGCAACAAATGGGC-TCGCATGGCTGCTCAG-TTACCAGGAAGAACAGATAACGAGATCA 334 Query 344 AGAACTACTGGAACAC 359 |||||||||||||||| Sbjct 335 AGAACTACTGGAACAC 350 > Ahg477416 jgi|Araly1|477416|fgenesh2_kg.3__117__AT3G01140.1 Length=1412 Score = 65.8 bits (35), Expect = 6e-10 Identities = 129/172 (75%), Gaps = 16/172 (9%) Strand=Plus/Plus Query 199 TGGATTAACTATCTCCGACCTGATC-TCAAAAGAGG-AAACTTTAC---ACATGATGAAG 253 |||| |||||| || ||||||| | |||| ||||| ||| || || ||| || ||| Sbjct 445 TGGACTAACTACCTAAGACCTGA-CATCAAGAGAGGCAAA-TTCACTGTACAAGAAGAAC 502 Query 254 ATGAACTTATCA-TCAAGCTTCATAGC-CTCCTAGGCAACAAGTGGTCTTTGATTGCGGC 311 | ||| |||| |||| || ||| || ||||| || |||| |||||| ||||| | Sbjct 503 A--AAC-CATCATTCAA-CTCCAT-GCTCTCCTCGGAAACAGGTGGTCAGCAATTGCAAC 557 Query 312 GAGA-TTACCTGGAAGAACAGATAACGAGATCAAGAACTACTGGAACACACA 362 | ||||| ||| ||||| ||||||||||||||||||||||||||||| Sbjct 558 -TCACTTACCCAAAAGGACAGACAACGAGATCAAGAACTACTGGAACACACA 608 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 36407385735 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5