BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G17120.1
Length=1333
Score E
Sequences producing significant alignments: (Bits) Value
Ahg931560 jgi|Araly1|931560|scaffold_304017.1 1448 0.0
> Ahg931560 jgi|Araly1|931560|scaffold_304017.1
Length=1111
Score = 1448 bits (784), Expect = 0.0
Identities = 1012/1116 (91%), Gaps = 40/1116 (4%)
Strand=Plus/Plus
Query 96 CCGGCGACCT-GAAAATGGAAACTTCCTGTTTTACccttctcggtctccttgtctccctc 154
||||| |||| ||||||||||||||| ||||||||||||||||||| || |||||| ||
Sbjct 6 CCGGCAACCTAAAAAATGGAAACTTCCCGTTTTACCCTTCTCGGTCTTCTCGTCTCCTTC 65
Query 155 tccttcttcctcactctctccGCCCAAATGACCGGAAACTTCAACTGCAGTGGCTCAACC 214
|||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||| |
Sbjct 66 TCCTTCTTCCTCACTCTCTCCGCCCAAATGACCGGAAACTTCAAATGCAGCGGCTCAATC 125
Query 215 TCGACGTGTCAATCTCTCGTTGGTTACTCAAGCAAGAACGCAACAACGTTGCGCAATATC 274
|| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 126 TCCACGTGTCAATCTCTCGTTGGTTACTCAAGCAAGAACGCAACAACGTTGCGCAGTATC 185
Query 275 CAAACCCTTTTTGCCGTCAAGAACCTCCGCTCGATCCTCGGAGCTAACAATCTCCCACTC 334
||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 186 CAAACCCTTTTCGCCGTCAAGAACCTCCGTTCGATCCTCGGAGCTAACAATCTCCCACTC 245
Query 335 AACACCTCACGTGACCAACGCGTGAACCCGAATCAAGTCGTACGTGTCCCAATCCATTGC 394
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 246 AACACCTCACGTGACCAACGCGTGAACCCGAATCAAGTCGTACGTATCCCAATCCATTGT 305
Query 395 TCTTGCTCCAATGGAACCGGTGTCTCGAACCGGGACATCGAATACACCATCAAGAAAGAC 454
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 306 TCTTGCTCCAACGGAACCGGTGTCTCGAACCGGGACATCGAATACACCATCAAGAAAGAC 365
Query 455 GACATACTCTCTTTCGTCGCAACTGAGATTTTCGGTGGTCTCGTTACGTA-CGAGAAGAT 513
|||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||
Sbjct 366 GACATACTCTCTTTCGTCGCAACTGAGATTTTCGGTGGTCTCGTTACGTATC-AGAAGAT 424
Query 514 CAGTGAGGTTAACAAAATCCCTGACCC-GAACAAAATCGAAATCGGTCAAAAGTTTTGGA 572
|||||||| ||||||||||||| |||| || |||||||||||||||||||||||||||||
Sbjct 425 CAGTGAGGCTAACAAAATCCCTAACCCAGA-CAAAATCGAAATCGGTCAAAAGTTTTGGA 483
Query 573 TCCCTTTGCCTTGTAGCTGTGATAAATTGAACGGTGAGGATGTTGTTCACTACGCACATG 632
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 484 TCCCTTTGCCTTGTAGCTGTGATAAATTGAACGGTGAGGATGTTGTTCACTACGCACACG 543
Query 633 TAGTCAAACTAGGGAGCTCTCTCGGTGAGATCGCTGCTCAGTTTGGAACGGACAACACGA 692
| || |||||||||||||||||| ||||||||||| ||||||||||||||||||||||||
Sbjct 544 TGGTTAAACTAGGGAGCTCTCTCCGTGAGATCGCTACTCAGTTTGGAACGGACAACACGA 603
Query 693 CGTTGGCTCAGCTCAATGGAATCATTGGTGACTCTCAGCTTCTTGCTGATAAACCTCTCG 752
||||||||||||| ||||||||||| |||||||||||||||||||||||||| |||||
Sbjct 604 CGTTGGCTCAGCTTAATGGAATCATCGGTGACTCTCAGCTTCTTGCTGATAATCCTCTTA 663
Query 753 ACGTCCCTCTCAAAGCTTGTAGCTCTTCTGTGAGGAAGGACTCGTTGGATGCTCCTCTGC 812
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 664 ACGTCCCTCTCAAAGCTTGTAGCTCTTCTGTGAGGAACGACTCGTTGGATGCTCCTCTGC 723
Query 813 TTCTGTCTAACAACTCATACGTCTTCACTGCAAACAATTGCGTCAAGTGTACTTGTGACG 872
||||||||||||||||||||| |||||||||||||| |||| |||||||| |||||||||
Sbjct 724 TTCTGTCTAACAACTCATACGCCTTCACTGCAAACACTTGCATCAAGTGTTCTTGTGACG 783
Query 873 CTTTGAAGAATTGGACTTTAAGCTGTCAATCATCATCTGAGATTAAGCCTTCGAA--C-- 928
||| ||||||||||||||||||||| || |||| || |||||| ||||||||| |
Sbjct 784 CTTCAAAGAATTGGACTTTAAGCTGTGAACCATC-TC--AGATTAGGCCTTCGAATTCGA 840
Query 929 --TGGCAAACCTGCCCACCATTTTCACAATGTGATGGAGC------TTTGCTTA-ACGC- 978
|||| ||| ||||| || || ||| ||| || ||||| |||| || | ||
Sbjct 841 CATGGCCAACTTGCCCGCC-TT--CACGATGCGAAGGAGCAGAGAGTTTGTTTCTAGGCA 897
Query 979 -CTCT--T-GCAGA-CA-----ACCTCGTGATTGCGTC-TATGCTGGTTACTCCAACCAA 1027
| | | |||| | ||||||| |||| | ||||||||||||||||||||
Sbjct 898 ACACGACTAGCAGCTCTTGCGGACCTCGTTCTTGCA-CATATGCTGGTTACTCCAACCAG 956
Query 1028 ACCATCTTCACCACAGCTT-CCCCAGCTTGTCCAGATTCTGCTGGTCCTGATAACTATGC 1086
||||||||||||||| ||| ||||| |||||||||||||||||||||||| |||||||||
Sbjct 957 ACCATCTTCACCACA-CTTTCCCCAACTTGTCCAGATTCTGCTGGTCCTGGTAACTATGC 1015
Query 1087 ATCAACGCTCAGCTCAAGCTTCAATTTCGTGATTGTGTTGATTCAGTGTGCTCTGCTTTG 1146
|||||| ||||||||||||||||||||||||| || ||||||||||||||| |||||||
Sbjct 1016 ATCAACATTCAGCTCAAGCTTCAATTTCGTGATGGTTTTGATTCAGTGTGCTTTGCTTTG 1075
Query 1147 TCTCTGCCTTCTCTAGTAATGTTTTGTTGT-GTGTT 1181
|||||| ||||||||||| ||||||||||| |||||
Sbjct 1076 TCTCTGTCTTCTCTAGTAGTGTTTTGTTGTTGTGTT 1111
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 49864775436
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5