BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G17420.1
Length=1469
Score E
Sequences producing significant alignments: (Bits) Value
Ahg319692 jgi|Araly1|319692|fgenesh1_pm.C_scaffold_3002708 1808 0.0
Ahg944345 jgi|Araly1|944345|scaffold_700574.1 933 0.0
> Ahg319692 jgi|Araly1|319692|fgenesh1_pm.C_scaffold_3002708
Length=1146
Score = 1808 bits (979), Expect = 0.0
Identities = 1096/1151 (95%), Gaps = 14/1151 (1%)
Strand=Plus/Plus
Query 1 TGTTGGATCTCAATGAGCCAGTCAAGATTCATTATAAAGTCTTTATTTAGCACAGCAGGA 60
|||||||||||||||||||||||||||||||| |||||||||||||| |||||||| |||
Sbjct 4 TGTTGGATCTCAATGAGCCAGTCAAGATTCATAATAAAGTCTTTATTAAGCACAGCTGGA 63
Query 61 GGTTTCTTACTTGGATCTGCTCTCTCAAATCCGCCGTCTCTAGCCACCGCGTTTTCTTCT 120
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 64 GGTTTCTTACTTGGATCTGCTCTCTCAAATCCGCCGTCTCTAGCCACCGCGTTTTCTTC- 122
Query 121 TCTTCCTCGTCCTCCTCCGCCGCCGCCGCCGTCGACATGGAAACTCACAAAACCAAGGTT 180
| | | | ||||||| || || ||||||||||||||||||||||||||||||||||
Sbjct 123 -C-T-C-C-TCCTCCT---CCACCACCGCCGTCGACATGGAAACTCACAAAACCAAGGTC 174
Query 181 TGCATCGTCGGAAGTGGACCAGCAGCACACACGGCGGCGATCTATGCATCGAGAGCGGAG 240
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||
Sbjct 175 TGCATCGTCGGAAGTGGACCAGCAGCACACACGGCGGCGATCTATGCATCTAGAGCTGAG 234
Query 241 CTTAAGCCTCTTCTCTTCGAAGGATGGATGGCTAACGACATCGCTCCCGGCGGTCAATTA 300
|||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||
Sbjct 235 CTTAAGCCTCTTCTCTTCGAAGGATGGATGGCTAACGATATCGCCCCCGGCGGTCAATTA 294
Query 301 ACTACAACAACCGACGTCGAAAACTTCCCTGGGTTCCCTGAAGGTATTCTCGGTATTGAT 360
|| ||||| ||||||||||| ||||||||||| |||||||||||||| |||||| |||
Sbjct 295 ACAACAACCACCGACGTCGAGAACTTCCCTGGATTCCCTGAAGGTATCCTCGGTGCTGAG 354
Query 361 ATCGTTGAGAAATTCAGAAAACAATCGGAGAGATTTGGAACTACGATCTTCACGGAAACT 420
||||||||||||||||||||||||||||||||||| || |||| ||||||||||||||||
Sbjct 355 ATCGTTGAGAAATTCAGAAAACAATCGGAGAGATTCGGTACTAAGATCTTCACGGAAACT 414
Query 421 GTTAACAAAGTTGATTTCTCATCGAAACCGTTTAAGCTATTCACTGATTCGAGAACTGTT 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 415 GTTAACAAAGTTGATTTCTCATCGAAACCGTTTAAGCTATTCACTGATTCGAGAACTGTT 474
Query 481 CTCGCTGATTCTGTAATCATTTCTACTGGAGCTGTTGCTAAACGTCTTAGCTTCACTGGA 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 475 CTCGCTGATTCTGTAATCATTTCTACTGGAGCTGTTGCTAAACGTCTTAGCTTCACTGGA 534
Query 541 TCTGGTGAAGGTAATGGTGGTTTTTGGAATCGTGGTATCTCCGCTTGTGCTGTTTGCGAC 600
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 535 TCTGGTGAAGGTAACGGTGGTTTTTGGAATCGTGGTATCTCCGCTTGTGCTGTTTGCGAC 594
Query 601 GGAGCTGCTCCGATTTTTAGGAATAAGCCTCTT-GTGGTTATTGGTGGTGGTGATTCAGC 659
|||||||||||||||||||||||||||||| || || |||||||||||||||||||| ||
Sbjct 595 GGAGCTGCTCCGATTTTTAGGAATAAGCCT-TTGGTTGTTATTGGTGGTGGTGATTCGGC 653
Query 660 TATGGAGGAAGCGAATTTTCTGACTAAGTATGGATCTAAGGTTTATATTATTCATAGGAG 719
|||||||||||| ||||| || |||||||||||||||||||||||||| || ||||||||
Sbjct 654 TATGGAGGAAGCTAATTTCCTCACTAAGTATGGATCTAAGGTTTATATAATCCATAGGAG 713
Query 720 GGATACGTTTAGGGCGTCTAAGATTATGCAGCAGAGAGCTTTGTCTAACCCTAAGATTGA 779
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 714 GGATACGTTTAGGGCGTCTAAGATTATGCAGCAGAGAGCTTTGTCTAACCCTAAGATTGA 773
Query 780 AGTGATTTGGAACTCTGCCGTGGTTGAGGCGTATGGTGATGAAAATGG---ACGTGTTCT 836
|||||||||||||||||| ||||| ||||| ||||| ||||||||||| | |||||||
Sbjct 774 AGTGATTTGGAACTCTGCGGTGGTGGAGGCTTATGGAGATGAAAATGGCAAAGGTGTTCT 833
Query 837 TGGAGGATTGAAGGTGAAGAATGTTGTTACTGGGGATGTTTCAGATCTGAAGGTGTCTGG 896
||||||||||||||||||||||||||||||||| | |||||||||| |||||||||||||
Sbjct 834 TGGAGGATTGAAGGTGAAGAATGTTGTTACTGGAGTTGTTTCAGATTTGAAGGTGTCTGG 893
Query 897 ATTGTTCTTTGCTATTGGTCATGAGCCAGCTACGAAGTTTTTGGATGGGCAGCTTGAGCT 956
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 894 ATTGTTCTTTGCTATTGGTCATGAGCCAGCTACGAAGTTTTTGGATGGGCAGCTTGAGCT 953
Query 957 TGATGAAGATGGTTATGTTGTGACCAAGCCAGGTACTACTAAGACGAGCGTGGTTGGTGT 1016
|||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||
Sbjct 954 TGATGAAGATGGTTATGTTGTGACTAAGCCTGGTACTACTAAGACGAGCGTGGTTGGTGT 1013
Query 1017 ATTTGCTGCTGGAGATGTTCAAGACAAGAAGTATAGACAGGCCATCACTGCTGCAGGAAC 1076
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1014 ATTTGCTGCTGGAGATGTTCAAGACAAGAAGTATAGACAGGCCATCACTGCTGCAGGAAC 1073
Query 1077 TGGGTGCATGGCGGCATTGGATGCAGAGCATTACTTACAAGAGATTGGATCTCAGGAGGG 1136
||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1074 TGGGTGCATGGCGGCTTTGGACGCAGAGCATTACTTACAAGAGATTGGATCTCAGGAGGG 1133
Query 1137 TAAGAGTGATT 1147
|||||||||||
Sbjct 1134 TAAGAGTGATT 1144
> Ahg944345 jgi|Araly1|944345|scaffold_700574.1
Length=1171
Score = 933 bits (505), Expect = 0.0
Identities = 845/1008 (84%), Gaps = 28/1008 (3%)
Strand=Plus/Plus
Query 160 GAAACTCACAAAACCAAGG-TTTGCATCGTCGGAAGTGGACCAGCAGCACACACGGCGGC 218
|||||||| || | ||||| | || ||||| || ||||| ||||| ||||||||||||||
Sbjct 162 GAAACTCATAACA-CAAGGCTCTGTATCGTAGGTAGTGGCCCAGCGGCACACACGGCGGC 220
Query 219 GATCTATGCATCGAGAGCGGAGCTTAAGCCTCTTCTCTTCGAAGGATGGATGGCTAACGA 278
||| || ||| | || || || |||||||||||||| ||||||||||||||||||||| |
Sbjct 221 GATTTACGCAGCTAGGGCTGAACTTAAGCCTCTTCTATTCGAAGGATGGATGGCTAACAA 280
Query 279 CATCGCTCCCGGCGGTCAATTAACTACAACAACCGACGTCGAAAAC-TTCCCTGGGTTCC 337
||||||||||||||||||| |||| || || ||||||||||| ||| ||||| || || |
Sbjct 281 CATCGCTCCCGGCGGTCAACTAACAACCACCACCGACGTCGAGAACTTTCCC-GGATTTC 339
Query 338 CTGAAGGTATTCTCGGTA-TTGATATCGTTGAGAAATTCAGAAAACAATCGGAGAGATTT 396
| |||||||||||||| | || || ||| |||||| | |||||||| ||| ||||
Sbjct 340 CGGAAGGTATTCTCGG-AGCAGAGCTCACTGACAAATTCCGTAAACAATCAGAGCGATTC 398
Query 397 GGAACTACGATCTTCACGGAAACTGTTAAC-AAAGTTGATTTCTCATCGAAACCGTTTAA 455
|| |||||||||||||| || || | | || |||||||||||||| ||||||||||||||
Sbjct 399 GGTACTACGATCTTCACAGAGAC-GGTGACGAAAGTTGATTTCTCTTCGAAACCGTTTAA 457
Query 456 GCTATTCACTGATTCGAGAACTGTTCTCGCTGATTCTG-TAATCATTTCTACTGGAGCTG 514
||||||||| ||||| ||||| ||||||||||| ||| || || | ||||||||||||
Sbjct 458 GCTATTCACAGATTCAAGAACCGTTCTCGCTGACGCTGTTATTC-TCGCTACTGGAGCTG 516
Query 515 TTGCTAAACGTCTTAGCTTCACTGGATCTGGTGAAGGTAATGGTGGTTTTTGGAATCGTG 574
| ||||| || |||| |||| ||| |||||||||||| || ||||| ||||| ||||
Sbjct 517 TGGCTAAGCGGCTTAACTTCGTTGGCTCTGGTGAAGGTTCCGGAGGTTTCTGGAACCGTG 576
Query 575 GTATCTCCGCTTGTGCTGTTTGCGACGGAGCTGCTCCGATTTTTAGGAATAAGCCTCTTG 634
| ||||||||||||||||||||||||||||||||||||||||| | || || |||||||
Sbjct 577 GAATCTCCGCTTGTGCTGTTTGCGACGGAGCTGCTCCGATTTTCCGTAACAAACCTCTTG 636
Query 635 TGGTTATTGGTGGTGGTGATTCAGCTATGGAGGAAGCGAATTTTCTGACTAAGTATGGAT 694
|||||| ||||| || |||||||| ||||| ||||| || ||||| || || |||||||
Sbjct 637 CGGTTATCGGTGGAGGCGATTCAGCAATGGAAGAAGCAAACTTTCTCACCAAATATGGAT 696
Query 695 CTAAGGTTTATATTATTCATAGGAGGGATACGTTTAGGGCGTCTAAGATTATGCAGCAGA 754
| || || ||||| || |||||||| ||| | ||||| |||||||||||||||||||||
Sbjct 697 CAAAAGTGTATATAATCCATAGGAGAGATGCTTTTAGAGCGTCTAAGATTATGCAGCAGC 756
Query 755 GAGCTTTGTCTAACCCTAAGATTGAAGTGATTTGGAACTCTGCCGTGGTTGAGGCGTATG 814
| ||||||||||| ||||||||||| ||||||||||||||| | || || || || ||||
Sbjct 757 GGGCTTTGTCTAATCCTAAGATTGATGTGATTTGGAACTCTTCGGTTGTGGAAGCTTATG 816
Query 815 GTGATG-A-AAATG-GACGTGTTCTTGGAGGATTGAAGGTGAAGAATGTTGTTACTGGGG 871
| |||| | ||| | || ||| |||||||||||||| ||||||||||| ||||||||
Sbjct 817 GAGATGGAGAAA-GAGATGTG--CTTGGAGGATTGAAAGTGAAGAATGTGGTTACTGGAC 873
Query 872 ATGTTTCAGATCTGAAGGTGTCTGGATTGTTCTTTGCTATTGGTCATGAGCCAGCTACGA 931
||||||| ||| |||| || |||||||||||||||||||||||||||||||||||||| |
Sbjct 874 ATGTTTCTGATTTGAAAGTTTCTGGATTGTTCTTTGCTATTGGTCATGAGCCAGCTACCA 933
Query 932 AGTTTTTGGATGG-GCAGCTTGAGCTT-GATGAAGATGGTTATGTTGTGACCAAGCCAGG 989
||||||| ||||| | | ||||| || ||| ||||||||||||||||||||||| ||
Sbjct 934 AGTTTTTAGATGGTGGTG-TTGAG-TTAGATTCGGATGGTTATGTTGTGACCAAGCCTGG 991
Query 990 TACTACTA-AGACGAGCGTGGTTGGTGTATTT-GCTGCTGGAGATGTTCAAGACAAGAAG 1047
|||||| | |||| ||||| || || ||| ||||| || |||||||| || ||||||
Sbjct 992 TACTAC-ACAGACTAGCGTTCCCGGAGT-TTTCGCTGCGGGTGATGTTCAGGATAAGAAG 1049
Query 1048 TATAGACAGGCCA-TCACTGCTGCAGGAACTGGGTGCATGGCGGCAT-TGGATGCAGAGC 1105
||||| || || | |||||||||||||||||||||||||||| || | ||||||||||||
Sbjct 1050 TATAGGCAAGC-AGTCACTGCTGCAGGAACTGGGTGCATGGCAGC-TCTGGATGCAGAGC 1107
Query 1106 ATTACTTACAAGAGATTGGATCTCAGGAGGGTAAGAGTGATTGAAGAA 1153
|||||||||| ||||||||||||||| | ||||||||||||||| |||
Sbjct 1108 ATTACTTACAGGAGATTGGATCTCAGCAAGGTAAGAGTGATTGAGGAA 1155
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 54964223535
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5