BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G17480.1
Length=2368
Score E
Sequences producing significant alignments: (Bits) Value
Ahg480631 jgi|Araly1|480631|fgenesh2_kg.3__3332__AT2G17480.1 2948 0.0
> Ahg480631 jgi|Araly1|480631|fgenesh2_kg.3__3332__AT2G17480.1
Length=2209
Score = 2948 bits (1596), Expect = 0.0
Identities = 1894/2034 (93%), Gaps = 36/2034 (2%)
Strand=Plus/Plus
Query 127 TCTTATTCCATTTGATC---TAAGTTTCTCGAAATAGGTACAAAGTTCGAGTCTTTTTCT 183
|||| |||||||||||| ||||||||| ||||||||||||||||||||||| |||||
Sbjct 43 TCTTCTTCCATTTGATCTAATAAGTTTCTGGAAATAGGTACAAAGTTCGAGTC--TTTCT 100
Query 184 TGTAACCGCGTGAAACCACCAAGAAACCTATAGTAAGAGTTTCCGCAAATGTGAATTAAA 243
|| ||||||||||||||||||||||||||| ||| ||||||||||||||||||| || ||
Sbjct 101 TGCAACCGCGTGAAACCACCAAGAAACCTA-AGT-AGAGTTTCCGCAAATGTGATTTTAA 158
Query 244 GACAGCTCATCACTCTGTCAAACTTCTACAGTATTAAGTTAACGAAGCAGGTACAGCC-A 302
||||||||||||||||||| ||||||||||| |||||||||||||||||||||| || |
Sbjct 159 GACAGCTCATCACTCTGTC-TACTTCTACAGTTTTAAGTTAACGAAGCAGGTACAACCAA 217
Query 303 AACTAAAATAACGCGGAGTTATGGGAATCATCGACGGTTCTTTGCTTCGGCGGTTGATTT 362
|||||||| |||||||||||||||||||||||||||||||||||||||| ||| ||||||
Sbjct 218 AACTAAAAAAACGCGGAGTTATGGGAATCATCGACGGTTCTTTGCTTCGCCGGCTGATTT 277
Query 363 GTCTCTGTCTCTGGTGTCTTCTCGGTGGAGGAGTGACGGTGGTTACGGCGGAGGATGAGA 422
||||| |||| | |||| || |||| | || |||||||| ||||||||||||||
Sbjct 278 GTCTCAGTCT-T-TTGTC-TC-CGGT----G-GT---GGTGGTTATGGCGGAGGATGAGA 325
Query 423 AGAAAGTGGTACATAAACAGCTTAATCAAACTCCGACTTGGGCTGTTGCTGCTGTTTGTA 482
|||| ||| |||||||| |||||||||| |||||||||||||||||||||||||||||||
Sbjct 326 AGAACGTGATACATAAAAAGCTTAATCAGACTCCGACTTGGGCTGTTGCTGCTGTTTGTA 385
Query 483 CTTTCTTCATCGTTGTTTCTGTTCTTCTTGAAAAACTTCTTCACAAAGTTGGAAAGGTTC 542
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 386 CTTTCTTCATCGTTGTTTCTGTTCTTCTTGAAAAACTTCTTCACAAAGTTGGAAAGGTTC 445
Query 543 TATGGGATCGGCACAAGACAGCTCTTCTTGACGCTTTGGAGAAGATCAAAGCAGAGCTGA 602
||||||||||||||||||| |||||||| || ||||||||||||||||||||||||||||
Sbjct 446 TATGGGATCGGCACAAGACTGCTCTTCTCGATGCTTTGGAGAAGATCAAAGCAGAGCTGA 505
Query 603 TGGTTCTTGGATTCATCTCTTTGCTTCTGACATTTGGACAAACCTACATTTTGGATATTT 662
|||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||
Sbjct 506 TGGTTCTTGGATTCATCTCTTTGCTTCTGACATTTGGAGAAAGCTACATTTTGGATATTT 565
Query 663 GTATCCCTTCACATGTTGCTCGTACGATGCTCCCGTGTCCTGCTCCTAA-CTTGAAAAAG 721
||||||||||||||||||||||||||||||||||||| ||||||||||| | |||||||
Sbjct 566 GTATCCCTTCACATGTTGCTCGTACGATGCTCCCGTGCCCTGCTCCTAAACC-GAAAAAG 624
Query 722 GAGGATGATGACAATGGTGAAAGTCACAGGAGACTCTTGTCGTTTGAGCACAGATTTTTA 781
||||| ||||||||||| |||||||||||||||||||||||||||||||||||||| |||
Sbjct 625 GAGGAAGATGACAATGGGGAAAGTCACAGGAGACTCTTGTCGTTTGAGCACAGATTCTTA 684
Query 782 TCTGGAGGTGAAGCATCTCCCACTAAATGCACGAAGGAGGGTTATGTAGAGCTTATCTCT 841
|| ||||||||||| |||||||||||||||| |||||||||||||| |||||||||||||
Sbjct 685 TCAGGAGGTGAAGCGTCTCCCACTAAATGCAAGAAGGAGGGTTATGAAGAGCTTATCTCT 744
Query 842 GCCGAGGCACTCCATCAGTTGCACATCCTTATATTCTTCTTAGCCATTTTCCACGTTCTT 901
|| |||||||| ||||||||||||| ||||| ||||||||||| ||||||| ||||||
Sbjct 745 GCTGAGGCACTTAATCAGTTGCACATACTTATCTTCTTCTTAGCTGTTTTCCATGTTCTT 804
Query 902 TACAGCTTCTTAACTATGATGCTTGGAAGGTTGAAGATTCGCGGATGGAAGCATTGGGAG 961
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 805 TACAGCTTCTTAACTATGATGCTTGGAAGGTTGAAGATTCGCGGATGGAAGCATTGGGAA 864
Query 962 AATGAGACATCATCCCATAATTACGAGTTTTCAACAGACACTTCCAGATTCAGGCTAACT 1021
|||||||||||||| | ||| ||||||||||||||||| |||||||||||||||||||||
Sbjct 865 AATGAGACATCATCTCGTAACTACGAGTTTTCAACAGATACTTCCAGATTCAGGCTAACT 924
Query 1022 CATGAAACATCTTTTGTGAGAGCGCACACCAGTTTCTGGACCCGGATTCCATTCTTTTTC 1081
|||||||| |||||||| ||||| ||||||||||||||||| ||||||||||||||||||
Sbjct 925 CATGAAACGTCTTTTGTAAGAGCACACACCAGTTTCTGGACTCGGATTCCATTCTTTTTC 984
Query 1082 TATGTTGGATGCTTTTTCAGACAGTTTTTCAGATCCGTTGGGAGAACTGACTATTTGACA 1141
||| ||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 985 TATATTGGATGTTTTTTCAGACAGTTTTTCAGATCTGTTGGGAGAACTGACTATTTGACA 1044
Query 1142 TTGAGAAATGGTTTCATCGCTGTTCATTTAGCTCCAGGAAGTCAATTTAACTTCCAAAAA 1201
||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1045 TTGAGAAATGGATTCATCGCTGTTCATCTAGCTCCAGGAAGTCAATTTAACTTCCAAAAA 1104
Query 1202 TACATTAAAAGATCGTTGGAGGATGATTTCAAGGTAGTCGTTGGAGTCAGCCCTGTCTTG 1261
||||| |||||||||||||||||||||||||| || ||||||||||||||||||||||||
Sbjct 1105 TACATAAAAAGATCGTTGGAGGATGATTTCAAAGTGGTCGTTGGAGTCAGCCCTGTCTTG 1164
Query 1262 TGGGGATCTTTTGTGCTATTCCTCCTCCTAAATATTGACGGCTTCAAGATGATGTTCATC 1321
|||||||||||||| ||||||||||||||||||||||| ||||| |||||| ||| | ||
Sbjct 1165 TGGGGATCTTTTGTTCTATTCCTCCTCCTAAATATTGATGGCTTTAAGATGTTGTACGTC 1224
Query 1322 GGCACTGCAATACCGGTTATTATCATTTTAGCTGTAGGGACAAAGCTTCAAGCGATTATG 1381
|||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||
Sbjct 1225 GGCACTGCAATACCGGTTATCATAATTTTAGCTGTAGGGACAAAGCTTCAAGCGATTATG 1284
Query 1382 ACAAGGATGGCTCTTGGTATCACAGATAGACATGCGGTAGTTCAAGGAATGCCGCTTGTA 1441
|||||||||||||| || ||||| ||||||||||| ||||||||||||||||||||||||
Sbjct 1285 ACAAGGATGGCTCTCGGAATCACCGATAGACATGCTGTAGTTCAAGGAATGCCGCTTGTA 1344
Query 1442 CAAGGCAACGATGAGTATTTCTGGTTCGGTCGTCCCCATTTGATTCTCCATCTCATGCAT 1501
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1345 CAAGGCAACGATGCGTATTTCTGGTTCGGTCGTCCCCATTTGATTCTCCATCTCATGCAT 1404
Query 1502 TTCGCCTTGTTTCAGAACGCATTTCAGATCACTTATTTCTTCTGGATATGGTATTCCTTT 1561
|||||||||||||||||||| ||||||||||| |||||||| ||||||||||||||||||
Sbjct 1405 TTCGCCTTGTTTCAGAACGCGTTTCAGATCACGTATTTCTTTTGGATATGGTATTCCTTT 1464
Query 1562 GGATCAGATTCTTGCTACCATCCTAATTTCAAGATTGCACTTGTAAAAGTAGCGATTGCT 1621
||| |||||||||||||||||||||||||||||||||| |||||||||||| |||||||
Sbjct 1465 GGAAAAGATTCTTGCTACCATCCTAATTTCAAGATTGCAATTGTAAAAGTAGGGATTGCT 1524
Query 1622 TTAGGAGTATTGTGTCTTTGCAGCTACATCACACTTCCTCTTTACGCACTCGTAACTCAG 1681
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1525 TTAGGAGTATTGTGTCTTTGCAGCTACATCACACTTCCTCTTTACGCACTCGTAACTCAG 1584
Query 1682 ATGGGTTCTCGGATGAAAAAATCGGTATTCGATGAACAAACGTCAAAAGCACTCAAGAAA 1741
|||||||| || ||||||||||||||||| ||||||||||| ||||| ||||||||||||
Sbjct 1585 ATGGGTTCGCGAATGAAAAAATCGGTATTTGATGAACAAACATCAAAGGCACTCAAGAAA 1644
Query 1742 TGGAGAATGGCAGTGAAGAAGAAGAAAGGTGTGAAAGCCACTACTAAGAGACTAGGTGGA 1801
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1645 TGGAGAATGGCAGTGAAGAAGAAGAAAGGTGTGAAAGCCACTACTAAGAGACTAGGTGGA 1704
Query 1802 GATGGAAGTGCGAGCCCTACGGCATCGACAGTTAGGTCTACTTCGTCTGTACGTTCATTG 1861
|| ||||| |||||||||||| |||| ||||||||||||||||||||| |||| ||||||
Sbjct 1705 GACGGAAGCGCGAGCCCTACGTCATCAACAGTTAGGTCTACTTCGTCTATACGATCATTG 1764
Query 1862 CAGCGTTACAAAACCACACCACATTCGATGAGATACGAAGGACTTGACCCTGAAACATCG 1921
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1765 CAGCGTTACAAAACCACACCACATTCGATGAGATATGAAGGACTTGACCCTGAAACATCG 1824
Query 1922 GATCTCGACACAGATAATGAAGCTTTGACTCCTCCCAAATCTCCTCCAAGCTTCGAGCTT 1981
||||| |||||||| || |||||||||||||||||||||||||||||||||||||||||
Sbjct 1825 GATCTTGACACAGACAACGAAGCTTTGACTCCTCCCAAATCTCCTCCAAGCTTCGAGCTA 1884
Query 1982 GTTGTGAAAGTTGAACCAAATAAG--A----CCAATACCGGTGAGACTAGCCGTGACACT 2035
|||||||| ||||||||||||||| | |||| ||||||||||||||||||||||||
Sbjct 1885 GTTGTGAAGGTTGAACCAAATAAGCTAGAGACCAAGACCGGTGAGACTAGCCGTGACACT 1944
Query 2036 GAAACTGATTCTAAAGAGTTCTCTTTCGTCAAGCCTGCTCCGAGTAATGAATCATCTCAA 2095
|||||||||||||||||||||||||| ||||||||||| |||||||| ||| |||| |||
Sbjct 1945 GAAACTGATTCTAAAGAGTTCTCTTTTGTCAAGCCTGCGCCGAGTAAAGAACCATCGCAA 2004
Query 2096 GACCGGTGAGACTAGTCAGGA-TTGTG---AAGGTGTA-GCCTGCGCCAAGTAA 2144
|||||||||||||||| | || || | ||| | || |||||||||||||||
Sbjct 2005 GACCGGTGAGACTAGTAAAGAGTTCTTTTCAAG-T-TAAGCCTGCGCCAAGTAA 2056
Score = 204 bits (110), Expect = 3e-51
Identities = 126/134 (94%), Gaps = 0/134 (0%)
Strand=Plus/Plus
Query 2218 ttttttttGGTTTCATTTATCTAATGCTATTGTAAATCAATGCCGTGGCGATAAAGTAAT 2277
||||||||||||| |||||||| ||||| |||||||||| |||||||| |||||||||||
Sbjct 2076 TTTTTTTTGGTTTAATTTATCTTATGCTTTTGTAAATCATTGCCGTGGTGATAAAGTAAT 2135
Query 2278 GTATTGATGACCATATTAATTAAAATAGGCTGAAGAAAATGAGGGACAAATATTAAGAAT 2337
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2136 GTATTGACGACCATATTAATTAAAATAGGCTGAAGAAAATGAGGGACAAATATTAAGAAT 2195
Query 2338 CAGTTTAGTAAAAA 2351
|| ||| |||||||
Sbjct 2196 CAATTTCGTAAAAA 2209
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 89207353790
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5