BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G17500.1
Length=1676
Score E
Sequences producing significant alignments: (Bits) Value
Ahg480634 jgi|Araly1|480634|fgenesh2_kg.3__3335__AT2G17500.3 2272 0.0
> Ahg480634 jgi|Araly1|480634|fgenesh2_kg.3__3335__AT2G17500.3
Length=1569
Score = 2272 bits (1230), Expect = 0.0
Identities = 1378/1448 (95%), Gaps = 16/1448 (1%)
Strand=Plus/Plus
Query 207 ATAAAAAGATGGGATTCTGGTCGTTGTTGGAGGTGGCTTCTATGCCGGTTATTCAAGTTC 266
||||||| |||||||||||||| ||||||||||||||||||||||||||| |||||||||
Sbjct 87 ATAAAAAAATGGGATTCTGGTCATTGTTGGAGGTGGCTTCTATGCCGGTTTTTCAAGTTC 146
Query 267 TTTTCATGAGTCTTGTGGGAGCTTTCATGGCCTCTGATCGTTGCAAGCTCTTCCCTGTTG 326
|| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 147 TTGTCATGAGTCTTGTGGGAGCTTTCTTGGCCTCTGATCGTTGCAAGCTCTTCCCTGTTG 206
Query 327 AAGCCCGTAATTCCATGAACAAGGTGGTGTTTGTACTATTTGCACCGGCTCTCATGTTTG 386
|||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 207 AAGCTCGCAATTCCATGAACAAGGTGGTGTTTGTACTATTTGCACCGGCTCTCATGTTTG 266
Query 387 CCAATCTAGCTCAGACGGTTACACTTGAAGACATCATCTCATGGTGGTTTATGCCGGTGA 446
||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||
Sbjct 267 CCAATCTAGCTCAGACGGTGACACTTGAAGACATTATCTCATGGTGGTTTATGCCGGTGA 326
Query 447 ACATGGGACTTACATTTCTAATCGGAGGACTTCTTGGGTGGTTGGTTGTTAAGATTTTGA 506
|||||||||||||||| |||||||||||||||||||||||| | ||||||||||||||||
Sbjct 327 ACATGGGACTTACATTCCTAATCGGAGGACTTCTTGGGTGGATAGTTGTTAAGATTTTGA 386
Query 507 AACCACCTCCTTATCTTGAAGGTCTTATTGTTGCAACTTGTTCTGCAGGAAATATGGGGA 566
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 387 AACCACCTCCTTATCTTGAAGGTCTTATTGTTGCAACTTGTTCTGCAGGAAATATGGGGA 446
Query 567 ACCTACCAATCATACTTGTCCCAGCAATCTGCGATGAGGACAAAAGTCCTTTTGGTAACC 626
|||||||||||||||||||||||||||||||||||||||| || ||||| ||||||||||
Sbjct 447 ACCTACCAATCATACTTGTCCCAGCAATCTGCGATGAGGATAAGAGTCCGTTTGGTAACC 506
Query 627 GAAGTGTATGTAGAACCGTCGGGCTCTCTTACGCGTCTTTCTCCATGGCGCTAGGGGGTT 686
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 507 GAAGTGTATGTAGAACCGTCGGGCTCTCTTACGCGTCTTTCTCCATGGCGCTAGGGGGTT 566
Query 687 TCTACATATGGACATACACATTCCGGCTGATTAAAGGGTCCGCAATGA-AAGTTCAAGCC 745
|||||||||||||||||||||| ||| |||| |||||||||||||||| || ||||||||
Sbjct 567 TCTACATATGGACATACACATTTCGGTTGATAAAAGGGTCCGCAATGAGAA-TTCAAGCC 625
Query 746 ATAGAAGAATCTGAGAAAATAGCAATTAAATCATCCAATAGTGACTTAGAAGCTGATCAT 805
|||||||||||||||| || ||||||||||||||||||||| |||||||| |||||||||
Sbjct 626 ATAGAAGAATCTGAGAGAACAGCAATTAAATCATCCAATAGCGACTTAGAGGCTGATCAT 685
Query 806 AAGACCCATCTCCTCGGTGCACCGGAAGACAAGGAAAACAAAGTGGTAAAGGAAAAGACA 865
||||||||||||||||||||||| ||||| |||||||||||||||||||||||| |||||
Sbjct 686 AAGACCCATCTCCTCGGTGCACCCGAAGATAAGGAAAACAAAGTGGTAAAGGAAGAGACA 745
Query 866 GGGTTTTGGAGAAAAGGAGTAGACTTCCTCCATGAGATATTGGAGGAGCTTCTTGCACCA 925
||||||||||| |||| |||||||||||||||||| ||||||||||| ||||| ||||||
Sbjct 746 GGGTTTTGGAGGAAAGTAGTAGACTTCCTCCATGATATATTGGAGGAACTTCTCGCACCA 805
Query 926 CCTACACTTGGTGCAATTATCGGTTTCATTTTCGGTGCAGTAAGATGGCTCAGAAATCTT 985
||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||
Sbjct 806 CCTACACTTGGTGCAATTATCGGTTTCATCTTCGGTGCAGTTAGATGGCTCAGAAATCTT 865
Query 986 ATCATAGGTGATGATGCTCCTTTACGAATAGTACAAAGCACTGCAAAACTTCTTGGAGAT 1045
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 866 ATCATAGGTGATGATGCTCCTTTACGAATAGTACAAAGCACTGCAAAACTTCTTGGAGAT 925
Query 1046 GGGACCATTCCCTGTATGACTATTATACTAGGGGGAAACCTCATACAAGGTTTACGTTCT 1105
||||||||||| ||||||||||||||||||||||| |||||||| |||||||||||||||
Sbjct 926 GGGACCATTCCTTGTATGACTATTATACTAGGGGGCAACCTCATTCAAGGTTTACGTTCT 985
Query 1106 TCGGCAGTCAAACC-GATGGTTGTACTTGGAATAGTCTGTGTTCGGTACAT-AGCTATGC 1163
|||||||||||||| | ||||||| |||||||||||||||||||||||||| | |||||
Sbjct 986 TCGGCAGTCAAACCAG-TGGTTGTTCTTGGAATAGTCTGTGTTCGGTACATTAT-TATGC 1043
Query 1164 CAATTATCGGTATAGGCATTGTACTAACAGCTGCAAATCTCGGATTTCTTCCAGCTGATC 1223
|||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||
Sbjct 1044 CAATTATCGGTATAGGCATTGTACTAACAGCTGCGAATCTCGGATTTCTTCCAGCGGATC 1103
Query 1224 CTTTGTTTCAGTATGTTTTGATGCTTCAGTTCACCCTCCCGCCTGCCATGAATATCGGTA 1283
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1104 CTTTGTTTCAGTATGTTTTGATGCTTCAATTCACCCTCCCGCCTGCCATGAATATCGGTA 1163
Query 1284 CCATGACACAGCTGTACAATGTTGCTCAAGACGAATGCTCAGTGCTCATGCTTTGGACCT 1343
||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||
Sbjct 1164 CCATGACACAGCTGTACAATGTTGCGCAAGACGAGTGCTCAGTGCTCATGCTTTGGACCT 1223
Query 1344 ACTTGGTCGCGATACTGGCCCTCACTGTATGGTCCACCATCTTCCTTCACTTGTTAGTCT 1403
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1224 ACTTGGTCGCGATACTGGCCCTCACTGTATGGTCCACCATCTTCCTTCACTTGTTAGTCT 1283
Query 1404 AAAGAACCTGCAACTCTGTATGAGCACAAGAAGATTCTATCTCTCTACTACTACAGAGAC 1463
| ||||||||||||||| ||||| ||||||||||||| |||||||||||||||||||||
Sbjct 1284 AGAGAACCTGCAACTCT--ATGAGAACAAGAAGATTCTTTCTCTCTACTACTACAGAGAC 1341
Query 1464 C--GAAG----CTCTGTCAAGGGATCTTACCATTCTTTTTGTCTATCACATAAAATTTGA 1517
| || | |||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1342 CATGAGGAAAACTCTGTGAAGGGATCTTACCATTCTTTTTGTCTATCACATAAAATTTGA 1401
Query 1518 TCATAACTTGATAGATTTTTCTGGTTGCATGCGTACCTTTCTGCAAATCTTCATTTTTCT 1577
| |||||||||||||||||||||||||||| || |||||||||||||||||||||||||
Sbjct 1402 TTGTAACTTGATAGATTTTTCTGGTTGCATGTGTGCCTTTCTGCAAATCTTCATTTTTCT 1461
Query 1578 CCATATCCCGATTTGTAAA-CGCCAATATTGTATCAAGTATTACATCAAGTTTAATGAAA 1636
||||||||| ||||||||| ||| |||||||||||||||||||||||| ||| |||||||
Sbjct 1462 CCATATCCCCATTTGTAAAACGCAAATATTGTATCAAGTATTACATCATGTT-AATGAAA 1520
Query 1637 AAGCATAT 1644
||||||||
Sbjct 1521 AAGCATAT 1528
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 62848904250
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5