BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT2G17520.1 Length=2915 Score E Sequences producing significant alignments: (Bits) Value Ahg480637 jgi|Araly1|480637|fgenesh2_kg.3__3338__AT2G17520.1 4340 0.0 > Ahg480637 jgi|Araly1|480637|fgenesh2_kg.3__3338__AT2G17520.1 Length=2894 Score = 4340 bits (2350), Expect = 0.0 Identities = 2749/2933 (94%), Gaps = 62/2933 (2%) Strand=Plus/Plus Query 4 AAGAAGATTCAAAAGGAGAACGCGTTAGACACACTAAGGGTGGGGGCAAGGGAGGAGAAA 63 ||||||||||||||||| |||||||||| |||||| |||||||||||||||||||||||| Sbjct 1 AAGAAGATTCAAAAGGAAAACGCGTTAGGCACACT-AGGGTGGGGGCAAGGGAGGAGAAA 59 Query 64 CTCGCCGGACAGAGACGGAGATCCCTAAACCGCAGCCTCAGACTAAAGCTTCGCATCTTA 123 |||| | | | |||||||||||||||||||||||| || ||| |||||||||||| Sbjct 60 CTCG-C---C---G--GGAGATCCCTAAACCGCAGCCTCACACAAAACCTTCGCATCTTA 110 Query 124 TCTCCGATCCATCGTTGACTTCACTCTTAGCTGATCATCATCATCATCTCTATCTCTGTT 183 ||||| || | ||||||||||| | | | | | | ||||||||||||||||||||| Sbjct 111 TCTCC-AT---TGGTTGACTTCAC-C--A--TCAGC-TGATCATCATCTCTATCTCTGTT 160 Query 184 CGGATTCTCCATAATTGATCCGGACCATGCCGCCGAGATGTCCTTTCCTCCGCCATCTTT 243 | |||||||||||||||||||||||||||||||||||||||| ||||||||||||||| | Sbjct 161 CAGATTCTCCATAATTGATCCGGACCATGCCGCCGAGATGTCGTTTCCTCCGCCATCTAT 220 Query 244 TCTTCTTACTACTATTACTCTCACCATGGATCATGTCTCCTTGCGGCGGCGCTGCCGACG 303 ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 221 TCTTCTTACTACTGTTACTCTCACCATGGATCATGTCTCCTTGCGGCGGCGCTGCCGACG 280 Query 304 ATGTGACGTATCCGATCGTTCCATCTAGTCCCGGCCGCAGATCAATTTTGCAGATTCGTC 363 ||||||||||||||||||| ||||||||||| || |||||| | |||||||||| | || Sbjct 281 ATGTGACGTATCCGATCGTGCCATCTAGTCCTGGTCGCAGAACGATTTTGCAGA-T--TC 337 Query 364 GTGAACCACCAACAGAGCCAAATACGAAAC-TTGTTGTTGAT-CGTGATGGGAAGGTGTT 421 || | | ||||| |||||| ||| ||| ||||||| ||| |||||| ||||| Sbjct 338 GT-------C-A-TGAGCCCAATACG-AACTTTGATGTTGATCCGT-CTGGGAAAGTGTT 386 Query 422 TTTAAAGCAGCAA-C-CGAAAG-AAACACCATACTGGTCCTTTTCAACAGGATCACCAAT 478 ||||||||||||| | | | | ||||| ||| ||||||||||||||||||||||| || Sbjct 387 TTTAAAGCAGCAATCACCAGCGCAAACA--ATA-TGGTCCTTTTCAACAGGATCACCTAT 443 Query 479 GCACTCGTTATATCAGGCT-C-C----TGCTAATAACAACACAGAAAATGCTACTGAGAT 532 ||| ||||||||||||||| | | ||||||||||||||||||||||||||||||||| Sbjct 444 GCATTCGTTATATCAGGCTCCTCTAAGTGCTAATAACAACACAGAAAATGCTACTGAGAT 503 Query 533 AA-CTCGTCCTCACATAATTGTTGAATATCTGAACAACTCAAAGGCGGCTACTACTGTCG 591 || | ||||||||||||||||| ||||||||||||||||||||||||||||| ||||| | Sbjct 504 AAGC-CGTCCTCACATAATTGTAGAATATCTGAACAACTCAAAGGCGGCTACAACTGTTG 562 Query 592 ATGGCTATCATAATTGGACAGTTCAGGAGTTTTTTAGGCAGAAGCCACTTGTAACAGATG 651 |||||||||||||||||||||||||||| ||||||||||||| ||||||||| || |||| Sbjct 563 ATGGCTATCATAATTGGACAGTTCAGGACTTTTTTAGGCAGAGGCCACTTGTGACGGATG 622 Query 652 ATGGTGTGACTCTTGGATCAGAAACAACTAGTGCCTATTTGGTTGATGGTAGATCAGGGA 711 |||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||| Sbjct 623 ATGGTGTGACTCTTGGGTCAGAAACAACTACTGCCTATTTGGTTGATGGTAGATCAGGGA 682 Query 712 GGCTGATTCATGTTTACAAATCAACTGGAGATACTAAGATTACTAATGCTCTCGTGAAGC 771 ||||||||||||||||||||||||| ||||||||||| |||||||||||| | ||||||| Sbjct 683 GGCTGATTCATGTTTACAAATCAACCGGAGATACTAAAATTACTAATGCTATGGTGAAGC 742 Query 772 CCGCTAGCACTGAAGATTTTGTGAATGAACCTCTTCTTATCAGGCGAACAGATTCCAAAC 831 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 743 CCGCTAGCACTGAAGATTTTGTGAATGAACCTCTTCTTATCAGGCGAACAGATTCCAAAC 802 Query 832 TTGAGCATTTTAGTAAAACCACTGGGAAGCTTGTCTGGAATTTGACGGTTTCTCACTTCA 891 | ||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||| Sbjct 803 TAGAGCATTTTAGTAAAACCACTGGAAAGCTTGTGTGGAATTTGACGGTTTCTCACTTCA 862 Query 892 GAGCTGCTTTACTATGTGATCCTGTTTTCAATTCTGGCTATGACCTCGGTCCTAAACTTC 951 ||||| |||||||||||||||| |||||||||||||||||||| |||||||||||||||| Sbjct 863 GAGCTTCTTTACTATGTGATCCAGTTTTCAATTCTGGCTATGAGCTCGGTCCTAAACTTC 922 Query 952 AAACTGGAATTTATATGCCATTGTTATGTGGATCACAAATTGACGTTCGTGGCCCAGAAA 1011 ||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||| Sbjct 923 AAACTGGAATTTATATGCCATTGGTATGTGGGTCACAAATTGACGTTCGTGGCCCAGAAA 982 Query 1012 TTGTTATCAGGGTGCTCCATGATCAGCCAATGAATGTGAAAATGCTACCCTCCCCTTCCC 1071 ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 983 TTGTTATTAGGGTGCTCCATGATCAGCCAATGAATGTGAAAATGCTACCCTCCCCTTCCC 1042 Query 1072 TAAATCACTTCGAGAGCGAAAACAGCATCATGCCTTTTGGAAAAGCCAGAGAGTCAAGAA 1131 ||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||| | Sbjct 1043 AAAATCACTTAGAGAGCGAAAACAGCATCATGCCTTTTGGAAAAGCCAGAGAATCAAGGA 1102 Query 1132 AGTTACAAGAGCAACATAAGCAGAAATATACATATTTGTTTGGACAATGGTCACCAGTAA 1191 ||||||||||||||||| ||| ||||||| |||| |||||||||||||||||||||||| Sbjct 1103 AGTTACAAGAGCAACATGGGCACAAATATAGATATGTGTTTGGACAATGGTCACCAGTAA 1162 Query 1192 AGTTATTGGCCCCTTTAGTGCTTCTAGGTGTTGTTGTCTCTGTTTTCATTAAAAAGTTTT 1251 ||||||||| ||||||||||||||| ||||||||| |||||||||||||||||||||||| Sbjct 1163 AGTTATTGGTCCCTTTAGTGCTTCTGGGTGTTGTTATCTCTGTTTTCATTAAAAAGTTTT 1222 Query 1252 CGTCGAGGGGCAGTGATGTTAGTTTGAAAGCTGGACCTTCCAAAAAGAAGAAGAACCGTA 1311 | ||||| |||||||||||||||| |||| |||||||||||||||||||||||||||||| Sbjct 1223 CTTCGAGTGGCAGTGATGTTAGTTCGAAATCTGGACCTTCCAAAAAGAAGAAGAACCGTA 1282 Query 1312 AATCCGCGAAGGATACAAATAGGCAGTCAGTTCCTCGTGGCCAGGATCAGTTCGAGCTCA 1371 |||| | ||||||| |||||||||||||||||||||||||||||||||| |||||||||| Sbjct 1283 AATCAGGGAAGGATGCAAATAGGCAGTCAGTTCCTCGTGGCCAGGATCAATTCGAGCTCA 1342 Query 1372 TTGAAGGAGGTCAAATGTTACTAGGCTTCAATAACTTTCAAAGTGGTGCAACTGATGGGA 1431 ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct 1343 TTGAAGGAGGTCAAATGTTACTAGGCTTCAATAACTTTCCAAGTGGTGCAACTGATGGGC 1402 Query 1432 GAAAGATCGGTAAGTTGTTTCTGTCAAGTAAAGAAATTGCAAAGGGAAGTAACGGAACTG 1491 |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 1403 GAAAGATCGGTAAGTTGTTTTTGTCAAGTAAAGAAATTGCAAAGGGAAGTAACGGAACTG 1462 Query 1492 TGGTGTTTGAGGGTATTTACGAAGGCCGGCCTGTAGCTGTAAAACGCCTTGTTCGATCTC 1551 ||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||| Sbjct 1463 TGGTGTTTGAGGGTATTTACGAAGGCCGGCCTGTAGCAGTAAAACGCATTGTTCGATCTC 1522 Query 1552 ATCATGAGGTTGCTTTCAAAGAGATTCAAAACCTCATTGCATCAGACCAACACACAAACA 1611 ||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||| Sbjct 1523 ATCATGAGGTTGCTTTCAAGGAGATTCAAAACCTCATTGCATCAGACCAACACTCAAACA 1582 Query 1612 TCATTCGGTGGTATGGTGTGGAGTATGATCAAGATTTTGTATACCTTTCTCTAGAGCGTT 1671 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 1583 TCATTCGGTGGTATGGTGTGGAGTATGATCAAGATTTTGTATACCTTTCTCTAGAACGTT 1642 Query 1672 GCACCTGCAGTTTAGATGATCTAATCAAATCCTATTTAGAGTTTTCTATGACAAAAGTAT 1731 |||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 1643 GCACGTGCAGTTTAGATGATCTAATCAAATCCTATTTAGAGTTTTCTATGACAAAAATAT 1702 Query 1732 TGGAAAACAACGATTCTACTGAAGGAGTGGCTGCTTATAAGATCCAACTTGATTCTTTGG 1791 ||| || ||||||||||||||||||||||||||| | ||||||||||||||||||||||| Sbjct 1703 TGGGAAGCAACGATTCTACTGAAGGAGTGGCTGCCTGTAAGATCCAACTTGATTCTTTGG 1762 Query 1792 AGGGAGTTATCAAAGGAAACAACTTTTGGAAAGTGGGGGGTCACCCGTCACCTCTCATGC 1851 |||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||| Sbjct 1763 AGGGAGTTATCAAAGGAAACAACTTTTGGAAAGTGGGGGGCCACCCGTCACCCCTCATGC 1822 Query 1852 TTAAACTAATGAGGGATATAGTTTGTGGAATCGTCCACTTACACGAATTGGGAATAGTTC 1911 ||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 1823 TTAAACTAATGAGTGATATAGTTTGTGGGATCGTCCACTTACACGAATTGGGAATAGTTC 1882 Query 1912 ATCGGGACTTGAAGCCACAAAATGTGTTAATTAGTAAAGATATGACTTTGAGTGCAAAAC 1971 |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct 1883 ATCGGGACTTGAAGCCACAAAATGTGTTAATTAGTAAAGAGATGACTTTGAGTGCAAAAC 1942 Query 1972 TGTCCGATATGGGCATTAGCAAGCGTATGTCCAGAGATATGTCATCATTGGGTCACCTTG 2031 | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1943 TTTCCGATATGGGCATTAGCAAGCGTATGTCCAGAGATATGTCATCATTGGGTCACCTTG 2002 Query 2032 CCACAGGTTCTGGCAGTTCGGGCTGGCAAGCACCAGAGCAGCTTCTACAAGGTCGTCAAA 2091 | ||||||||||| |||||||| |||||||||||||||||||||||||| |||||||||| Sbjct 2003 CAACAGGTTCTGGTAGTTCGGGTTGGCAAGCACCAGAGCAGCTTCTACATGGTCGTCAAA 2062 Query 2092 CTCGTGCAGTCGATATGTTTAGTTTAGGTTGTGTCATCTTTTACACTATAACCGGTTGTA 2151 |||||||||| || |||||||||||||||||| ||||||||||||| ||||||||||||| Sbjct 2063 CTCGTGCAGTGGACATGTTTAGTTTAGGTTGTCTCATCTTTTACACGATAACCGGTTGTA 2122 Query 2152 AGCATCCCTTTGGTGATGATCTTGAACGAGATGTCAATATTGTGAAGAACAAAGTCGACC 2211 ||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2123 AGCATCCATTTGGAGATGATCTTGAACGAGATGTCAATATTGTGAAGAACAAAGTCGACC 2182 Query 2212 TATTTCTAGTAGAACACGTTCCAGAAGCTTCAGACCTCATATCCCGTTTGTTAAACCCAG 2271 |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 2183 TATTTCTAGTAGAACACGTTCCAGAAGCTTCAGACCTCATATCCCGTTTGTTGAACCCAG 2242 Query 2272 ACCCTGATTTACGTCCTAGCGCAA-CTGAAGTGCTACTCCATCCTATGTTTTGGAACTCA 2330 |||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||| Sbjct 2243 ACCCTGATTTACGTCCTAGCGCAAGC-GAAGTGCTACTCCATCCTATGTTTTGGAACTCA 2301 Query 2331 GAGATGAGACTGTCTTTCCTTCGTGATGCTAGTGACCGAGTTGAGCTTGAAAATAGAGAA 2390 ||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 2302 GAGATGAGACTATCTTTCCTTCGGGATGCTAGTGACCGAGTTGAGCTTGAAAATAGAGAA 2361 Query 2391 GCTGATTCTGAAATCTTGAAAGCAATGGAGAGTACAGCTCCAGTGGCTATAGGAGGGAAA 2450 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2362 GCTGATTCTGAAATCTTGAAAGCAATGGAGAGTACAGCTCCAGTGGCTATAGGAGGGAAA 2421 Query 2451 TGGGATGAAAAGCTAGAACCTGTTTTCATCACAAACATCGGGCGCTACAGGCGTTACAAA 2510 |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 2422 TGGGATGAAAAGCTAGAACCTGTTTTCATCACAAACATTGGGCGCTACAGGCGTTACAAA 2481 Query 2511 TACGATAGCATCCGTGACTTGTTACGAGTCATCAGGAACAAACTGAATCATCATCGAGAA 2570 ||||||||||| ||||||||| ||||||| ||||| ||||||||||||||| |||||||| Sbjct 2482 TACGATAGCATTCGTGACTTGCTACGAGTTATCAGAAACAAACTGAATCATTATCGAGAA 2541 Query 2571 CTTCCTCCGGAAATTCAGGAACTTGTCGGAACAGTTCCAGAAGGATTCGACGAGTACTTT 2630 |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2542 CTTCCTCCAGAAATTCAGGAACTTGTCGGAACAGTTCCAGAAGGATTCGACGAGTACTTT 2601 Query 2631 GCTGTACGGTTTCCGAAATTGTTGATTGAAGTCTATAGAGTCATCTCTCTGCATTGTAGG 2690 ||||||||||||||||| ||||||||||||||||||||||||||||||||||| || ||| Sbjct 2602 GCTGTACGGTTTCCGAAGTTGTTGATTGAAGTCTATAGAGTCATCTCTCTGCACTGCAGG 2661 Query 2691 GAAGAAGAAGTATTCAGAAAGTACTTCAAATGCGACATCATCTAAAAGACTGTTTCGCTT 2750 |||||||||||||||| |||||||||||||||| |||||||||||||||| ||||||||| Sbjct 2662 GAAGAAGAAGTATTCAAAAAGTACTTCAAATGCAACATCATCTAAAAGACCGTTTCGCTT 2721 Query 2751 CCAGCACTTTATATGTTAGTTATTGTATGTTTGTCATTGTTATATAACATAACTTAACTG 2810 |||||||||||| |||||||||||||||||||||||||||||||| |||||| ||||||| Sbjct 2722 CCAGCACTTTATTTGTTAGTTATTGTATGTTTGTCATTGTTATATTACATAAATTAACTG 2781 Query 2811 ATATCTAAATGTTTAACGTATAACTTAA-ACTGCAACATAT-GTAGT-AT-T--T-ATAT 2863 ||||||||||||||||||||||||||| |||||||||||| ||| | || | | |||| Sbjct 2782 CTATCTAAATGTTTAACGTATAACTTAAGACTGCAACATATAGTACTTATATAGTTATAT 2841 Query 2864 ATGTATATATCTCTTCAAGTAA---CTATGTTTCAAGTGACGTATTCTGCAAC 2913 ||||||||||||||||| |||| |||||||||||||||||||||||||||| Sbjct 2842 ATGTATATATCTCTTCATGTAAAAACTATGTTTCAAGTGACGTATTCTGCAAC 2894 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 110042717805 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5