BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT2G17640.1 Length=1401 Score E Sequences producing significant alignments: (Bits) Value Ahg480656 jgi|Araly1|480656|fgenesh2_kg.3__3357__AT2G17640.1 1722 0.0 > Ahg480656 jgi|Araly1|480656|fgenesh2_kg.3__3357__AT2G17640.1 Length=1271 Score = 1722 bits (932), Expect = 0.0 Identities = 1066/1130 (94%), Gaps = 11/1130 (1%) Strand=Plus/Plus Query 154 TCAAAGTTTCT-CATCATATCCATTAAAGTAGCCTCCTTTTTGCTTTCTCCGTCTCTCTC 212 ||||||||| | ||| |||||||||||||||||||||||||||||||||||| |||| Sbjct 95 TCAAAGTTT-TGCATAATATCCATTAAAGTAGCCTCCTTTTTGCTTTCTCCG----TCTC 149 Query 213 TCTTTTGTCCAATCAAAAAGAGTTTGTGATTCTTCTTTATCGTCTCCTTGGAGAGATATG 272 |||||||||||||| |||||||||||||||||||||| ||||||| ||| | |||||||| Sbjct 150 TCTTTTGTCCAATC-AAAAGAGTTTGTGATTCTTCTTCATCGTCTTCTT-G-GAGATATG 206 Query 273 AATGGCGATGAGCTTCCTTTCGAGAGTGGTTTCGAGGTTTACGCTAAGGGAACTCATAAG 332 || ||||||||||||||||||||||| |||||||||||||||||||||||||| |||||| Sbjct 207 AACGGCGATGAGCTTCCTTTCGAGAGGGGTTTCGAGGTTTACGCTAAGGGAACGCATAAG 266 Query 333 TCAGAGTTTGACTCGAATTTGCTTGATCCTCGTTCTGATCCTATTTGGGATGCTATAAGA 392 ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 267 TCAGAGTTTGACTCGAATTTGCTTGATTCTCGTTCTGATCCTATTTGGGATGCTATAAGA 326 Query 393 GAAGAAGCTAAACTTGAGGCAGAGAAAGAGCCTATTTTGAGTAGCTTCTTGTATGCTGGT 452 ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 327 GAAGAAGCTAAGCTTGAGGCAGAGAAAGAGCCTATTTTGAGTAGCTTCTTGTATGCTGGT 386 Query 453 ATCTTAGCACATGATTGTTTAGAGCAAGCTTTAGGGTTTGTTCTAGCCAACCGTCTCCAA 512 ||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 387 ATCTTGGCACATGACTGTTTAGAGCAAGCTTTAGGGTTTGTTCTAGCCAACCGTCTCCAA 446 Query 513 AACCCAACCTTGTTGGCAACACAACTCTTGGATATATTTTATGGTGTTATGATGCATGAC 572 |||||||||||||||||||| ||||| ||||| ||||||||||||||||||||||||||| Sbjct 447 AACCCAACCTTGTTGGCAACTCAACTTTTGGACATATTTTATGGTGTTATGATGCATGAC 506 Query 573 AAAGGTATTCAGAGTTCGATTCGCCATGATCTCCAGGCATTTAAAGATCGTGATCCTGCT 632 ||| |||||||||||||||||||||||||| | |||||||||||||| || ||||||||| Sbjct 507 AAAAGTATTCAGAGTTCGATTCGCCATGATATTCAGGCATTTAAAGACCGGGATCCTGCT 566 Query 633 TGTCTGTCGTATAGTTCTGCTATTTTACATCTGAAGGGTTATCATGCGTTACAAGCATAT 692 ||||| |||||||||||||||||||||||||||||||| ||||| ||||| |||||||| Sbjct 567 TGTCTCTCGTATAGTTCTGCTATTTTACATCTGAAGGGGTATCACGCGTTGCAAGCATAC 626 Query 693 AGGGTTGCGCATAAACTGTGGAATGAAGGGAGGAAACTATTAGCTCTTGCATTGCAAAGC 752 |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 627 AGGGTTGCGCATAAACTGTGGAATGAAGGGCGGAAACTATTAGCTCTTGCATTGCAAAGC 686 Query 753 CGAATAAGCGAGGTTTTTGGCATTGACATACATCCAGCGGCAAGAATTGGGGAGGGAATA 812 |||||||||||||||||||| || ||||| |||||||||||||||||||||||||||||| Sbjct 687 CGAATAAGCGAGGTTTTTGGAATCGACATTCATCCAGCGGCAAGAATTGGGGAGGGAATA 746 Query 813 TTGTTGGATCATGGAACTGGAGTGGTCATTGGTGAGACCGCTGTGATAGGCAACGGTGTC 872 ||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||| Sbjct 747 TTGTTGGATCATGGAACTGGAGTGGTCATCGGTGAGACCGCTGTGATAGGAAACGGTGTC 806 Query 873 TCGATCTTACATGGTGTGACTTTAGGAGGAACCGGAAAGGAAACTGGCGATCGCCACCCA 932 ||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||| Sbjct 807 TCGATCTTACATGGTGTGACTTTAGGAGGAACCGGAAAGGAAACTGGTGATCGTCACCCA 866 Query 933 AAGATAGGTGAAGGTGCATTGCTTGGAGCTTGTGTGACTATACTTGGTAACATAAGCATA 992 || |||||||||||||||||||||||||||||||||||||||||||| |||||||| ||| Sbjct 867 AAAATAGGTGAAGGTGCATTGCTTGGAGCTTGTGTGACTATACTTGGGAACATAAGTATA 926 Query 993 GGTGCTGGAGCAATGGTAGCTGCAGGTTCACTTGTGTTAAAAGACGTTCCTTCGCATAGT 1052 |||||||| ||||||||||| || ||||||||||| ||||| |||||||||||||||||| Sbjct 927 GGTGCTGGGGCAATGGTAGCCGCGGGTTCACTTGTATTAAAGGACGTTCCTTCGCATAGT 986 Query 1053 GTGGTGGCTGGAAATCCTGCAAAACTGATCAGGGTCATGGAAGAGCAAGACCCGTCTCTA 1112 |||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||| Sbjct 987 GTGGTGGCTGGAAATCCTGCGAAACTGATCAGGGTCATGGAAGAGCAAGACCCATCTCTA 1046 Query 1113 GCAATGAAACACGATGCTACTAAAGAGTTCTTTCGACATGTAGCTGATGGTTACAAAGGG 1172 ||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||| Sbjct 1047 GCAATGAAACACGATGCTACTAAAGAGTTCTTTCGGCATGTAGCTGATGGTTACAGAGGG 1106 Query 1173 GCACAATCTAACGGACCATCACTTTCAGCAGGAGATACAGAGAAAGGACACACTAACAGC 1232 ||||| ||||| ||||||||| |||||| |||||||||||||||||||||||||||| || Sbjct 1107 GCACATTCTAATGGACCATCAGTTTCAGGAGGAGATACAGAGAAAGGACACACTAACTGC 1166 Query 1233 ACATCATGAGATCTTTGTATGCAAATTT-CTTACCATCATAAGCTAATTC 1281 | ||||||||||| |||||||| | ||| |||| |||||||||| ||||| Sbjct 1167 AAATCATGAGATCCTTGTATGCGA-TTTGCTTATCATCATAAGCCAATTC 1215 Score = 152 bits (82), Expect = 6e-36 Identities = 91/95 (96%), Gaps = 1/95 (1%) Strand=Plus/Plus Query 28 GTAGAACCATTCAAAGCGGTGGACACTGGaacacaacacaaacacaagatcaacgagaaa 87 ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 1 GTAGAACCATTCAAAGCGGTGGACACTGGAACACAACAC-AACACAAGATCAACGAGAAA 59 Query 88 ccaaacaacaacaGCGACCATCGAGAGAATCCACT 122 ||||||| ||||| |||||||| |||||||||||| Sbjct 60 CCAAACATCAACAACGACCATCAAGAGAATCCACT 94 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 52374086875 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5