BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G17710.1
Length=911
Score E
Sequences producing significant alignments: (Bits) Value
Ahg480666 jgi|Araly1|480666|fgenesh2_kg.3__3367__AT2G17710.1 1160 0.0
> Ahg480666 jgi|Araly1|480666|fgenesh2_kg.3__3367__AT2G17710.1
Length=837
Score = 1160 bits (628), Expect = 0.0
Identities = 793/864 (92%), Gaps = 45/864 (5%)
Strand=Plus/Plus
Query 47 TATAGTTTGTCTTAACGTACAAGATAATTTGAAAGGTAGACGTAGACGTTGGATACTTAT 106
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
Sbjct 14 TATAGTTTGTCTTAACGTACAAGATAATTTGAAGGGTAGACGTAGACGTTGGATACTTCT 73
Query 107 TTGGTAGGCTCTTAAGAATCTTAGGTGTATCTCTTTAGTTTGAAGGTTAGATTCAGAATC 166
||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 74 TTGGTAGACTCTTAAGAATCTTAGGTGTATCTCTTTAGTTTGAAGGTAAGATTCAGAATC 133
Query 167 TCTGTAGATTCATTAGTAGCTTTTTCTGTGTGATCTTTGTGTTGTATATATATAGATCGA 226
||||||||||| | |||| |||||||| |||||||| | ||
Sbjct 134 TCTGTAGATTC------A---TTTT-GGTGTGATCGTTGTGTTG--------T--AT--- 170
Query 227 ATTGATTTTAGCTGGTGAAAGGTGAAGTTGTGGTATGAATATGAAGAAACAGATTATGGA 286
| | | |||||| | ||||||||||||||||||||||||||||||||||||||||
Sbjct 171 A-T-A-TTTAGC---T----GGTGAAGTTGTGGTATGAATATGAAGAAACAGATTATGGA 220
Query 287 TGAGTCTGTA-AAGTCATTGATGCTGCCTCCTCCTCCACCGCTTCTTCCTCCATCT-CAG 344
|||||||| | ||||||||||||| |||||||||||||||| |||||||||||| ||
Sbjct 221 TGAGTCTG-AGAAGTCATTGATGCCGCCTCCTCCTCCACCG---CTTCCTCCATCTCCA- 275
Query 345 GGATATGGATCAAGAAAGATCGATGGAGACAGCATAACCAATAAACAGATCAAGAAGTTC 404
|||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 276 GGATATGGATTTAGAAAGATCCATGGAGACAGCATAACCAATAAACAGATCAAGAAGTTT 335
Query 405 TGGAGACAGAAGCAGATCATTGAAGAGGATCATCTCTATTCTGCTATTAAGGCTGCAGCT 464
||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 336 TGGAGGCAGAAGCAGATCATTGAAGAGGATCATCTCTTTTCTGCTATTAAGGCTGCAGCT 395
Query 465 CGTGTCAGAGCTCGTAATCTCTCTGATGAGGACTACAAACGCTTTGAAGAAAGCTTGGAC 524
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 396 CGTGTCAGAGCTCGTAATCTCTCTGATGAGGACTACAAACGCTTTGAAGAAAGCTTGGAC 455
Query 525 ATGGAGGACCTGGA-AACCGAAGATCATCAGGGATTGAAAGACTGGTGGACAAAGAGCAA 583
||||||| |||| | |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 456 ATGGAGGTCCTG-ATAACCGAAGATCATCAGGGATTGAAAGACTGGTGGACAAAGAGCAA 514
Query 584 ATACGCGTACTTGAACCAGCCGGCTCTTGGATCTGCAGATTCACTGAAGAGAAAGAGGTT 643
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 515 ATACGCATACTTGAACCAGCCGGCTCTTGGATCTGCAGATTCACTGAAGAGAAAGAGGTT 574
Query 644 TTCGACTTATACACCAAACTGTTTCTCGTTCAAGCCTTGCAATCCTCTCTACGCAACTTC 703
|||||| |||||||||||||| |||||||||||||| |||||||||||||||||||||||
Sbjct 575 TTCGACATATACACCAAACTGGTTCTCGTTCAAGCCATGCAATCCTCTCTACGCAACTTC 634
Query 704 GCTCAATGTCTTTTGAACCATGAGCAGCAAACTCTGCAAGATCAATCGTCTTGCATATAT 763
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 635 GCTCAATGTCTTTTGAACCATGAGCAGCAAACTCTGCAAGATCAATTGTCTTGCATATAT 694
Query 764 GTATATATTTGTTCGTGTGTGT--CTCTGTACATGTCATGTGTTATTGCTTCTATATTAA 821
||||||| ||||||||||||| ||||| |||| |||||||||| ||||||||| ||||
Sbjct 695 GTATATAGATGTTCGTGTGTGTGTCTCTGAACAT-TCATGTGTTAATGCTTCTATGTTAA 753
Query 822 TGGATCTGGACTTTGGTGTGGTTGTTGATTTGTAACTGTTGAATAAAATCTTTCTATGGA 881
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 754 TGGATCTGGACTTTGGTGTGGTTTTTGATTTGTAACTGTTGAATAAAATCTTTCTATGGA 813
Query 882 ACACTAATTTCTTCTTGTTCCATA 905
||| ||||||||||||||||||||
Sbjct 814 ACATTAATTTCTTCTTGTTCCATA 837
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 33776904462
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5