BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT2G17730.2 Length=1269 Score E Sequences producing significant alignments: (Bits) Value Ahg931636 jgi|Araly1|931636|scaffold_304093.1 1125 0.0 > Ahg931636 jgi|Araly1|931636|scaffold_304093.1 Length=763 Score = 1125 bits (609), Expect = 0.0 Identities = 682/717 (95%), Gaps = 6/717 (1%) Strand=Plus/Plus Query 173 GTTTCTGGGTTCTTAAGAATAACATGGCCTCGTCATCATCATCATCTTATAGATTCCAAT 232 ||||||||||||||||||| ||||||| | | ||||||||||||||||||||||||| Sbjct 1 GTTTCTGGGTTCTTAAGAAAAACATGG---C--C-TCATCATCATCTTATAGATTCCAAT 54 Query 233 CTGGGTCTTACCCTCTTTCGTCAAGTCCTTCTCTTGGGAATTTCGTCGAACGCATTAAAG 292 |||||| || ||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 55 CTGGGTTTTGTCCTCTTTCGTCAAGTCCTTCTCTTGGGAATTTCGTCGAACGGATTAAAG 114 Query 293 ACGCTTGTCATTTCCTTGTCTCTGCTGTTTTGGGTACCATTATCTCCGCGATCTTGACCT 352 ||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||| Sbjct 115 ACGCTTGTCATTTCCTTGTCTCTGCTGTTTTTGGTACCATTATCTCGGCGATCTTGACCT 174 Query 353 TCTTCTTCGCACTAGTGGGCACATTGCTAGGGGCACTTACAGGAGCTTTGATAGGTCAAG 412 ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 175 TCTTCTTCGCACTAGTGGGAACATTGCTAGGGGCACTTACAGGAGCTTTGATAGGTCAAG 234 Query 413 AAACTGAGAGTGGTTTCATTAGAGGAGCAGCAATTGGAGCCATTTCGGGAGCTGTTTTCT 472 |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 235 AAACTGAGAGTGGTTTCATTAGAGGAGCAGCAATTGGAGCCATTTCTGGAGCTGTTTTCT 294 Query 473 CTATCGAGGTCTTTGAATCATCTCTGGATCTCTGGAAATCCGATGAGTCGGGTTTCGGAT 532 |||| ||||||||||||||||| || |||||||||||||||||||||||||||||||| | Sbjct 295 CTATTGAGGTCTTTGAATCATCACTTGATCTCTGGAAATCCGATGAGTCGGGTTTCGGTT 354 Query 533 GTTTTCTCTACTTGATTGATGTCATTGTTAGTCTTCTAAGCGGGAGACTTGTACGAGAGC 592 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 355 GTTTTCTCTACTTGATTGATGTCATTGTTAGTCTTCTAAGCGGGAGACTTGTACGAGAAC 414 Query 593 GCATTGGTCCTGCAATGCTAAGTGCAGTGCAAAGTCAAATGGGAGCTGTGGATACAGCTT 652 ||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||| | Sbjct 415 GCATTGGTCCTGCAATGCTAAGTGCGGTGCAAAGTCAAATGGGAGCTGTGGATGCAGCCT 474 Query 653 TTGATGATCACACAAGCCTTTTTGATACAGGAGGCTCAAAAGGATTGACAGGAGACCTTG 712 ||||||||||||| ||||| |||||||||||||||||||||||||| |||||||| |||| Sbjct 475 TTGATGATCACACTAGCCTCTTTGATACAGGAGGCTCAAAAGGATTAACAGGAGAACTTG 534 Query 713 TTGAGAAAATCCCAAAGATGACAATCACTGGCAACAATAACACTGATGCTTCTGAGAACA 772 ||||||||||||||||||||||||||||||||||||||||||| |||||| |||| |||| Sbjct 535 TTGAGAAAATCCCAAAGATGACAATCACTGGCAACAATAACACCGATGCTCCTGAAAACA 594 Query 773 CAGACTCATGTTCTGTTTGTCTTCAGGATTTCCAGCTCGGTGAAACAGTTAGAAGCTTGC 832 |||| | ||||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct 595 GAGACCCCTGTTCTGTTTGTCTTCAGGATTTCCAGCTTGGTGAAACAGTTAGAAGCTTGC 654 Query 833 CTCATTGTCATCACATGTTTCACTTACCTTGCATAGACAATTGGCTCCTTAGACACG 889 ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 655 CTCATTGTCATCACATGTTTCACTTACCTTGCATAGACAATTGGCTCCTCAGACACG 711 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 47424908748 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5