BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT2G17780.1 Length=1681 Score E Sequences producing significant alignments: (Bits) Value Ahg480672 jgi|Araly1|480672|fgenesh2_kg.3__3373__AT2G17780.1 2222 0.0 Ahg491044 jgi|Araly1|491044|fgenesh2_kg.7__477__AT4G35920.1 767 0.0 > Ahg480672 jgi|Araly1|480672|fgenesh2_kg.3__3373__AT2G17780.1 Length=1484 Score = 2222 bits (1203), Expect = 0.0 Identities = 1399/1493 (94%), Gaps = 16/1493 (1%) Strand=Plus/Plus Query 151 AGGAAGAGAAATGGCTAATTCATGGGATCAGTTAGGAGAAATTGCGTCAGTGGCTCAGCT 210 ||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||| Sbjct 1 AGGAAGAGAAATGGCTAATTCATGGGATCAGTTAGGAGAAATTCCGTCAGTAGCTCAGCT 60 Query 211 TACAGGCATAGACGCTCTGAAACTGATTGGAATGATAGTAAACGCTGCGAATACAGCTCG 270 ||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||| Sbjct 61 TACAGGCATAGACGCCCTAAAACTGATTGGAATGATAGTAAACGCTGCGAATACAGCTCG 120 Query 271 AATGCACAAGAAGAATTGTCGTCAATTCGCTCACCATCTTAAGCTCATCCGTAATTTGCT 330 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 121 AATGCACAAGAAGAATTGTCGTCAATTCGCTCACCATCTTAAGCTCATCCGTAATTTGCT 180 Query 331 AGAGCAGATTAAAAACTCTGAGATGAATCAACGTTCAGAGATTCTTGAGCCGCTTCAAGG 390 ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 181 AGAGCAGATAAAAAACTCTGAGATGAATCAACGTTCAGAGATTCTTGAGCCGCTTCAAGG 240 Query 391 ACTTGATGATGCTCTTAGAAGATCTTACATTTTAGTCAAAAGTTGTCAAGAAAAAAGTTA 450 |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 241 ACTTGATGATGCTCTTAGAAGATCTTACATTTTAGTCAAAAGTTGTCAAGAAAAGAGTTA 300 Query 451 TCTTTACTTGTTGGCTATGGGCTGGAACATTGTTAACCAGTTTGAAAAAGCTCAGAATGA 510 ||||||||||||||||||||| |||||||||||||||||||||||||||||||||| || Sbjct 301 TCTTTACTTGTTGGCTATGGGATGGAACATTGTTAACCAGTTTGAAAAAGCTCAGACCGA 360 Query 511 GATTGATCTGTTTCTCAAGATCGTTCCACTAATAAATATGGCGGATAATGCTCGGATTCG 570 |||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||| Sbjct 361 GATTGATCTGTTTCTCAAGATCGTTCCACTCATAAATATGGCGGATAATGCTCGCATTCG 420 Query 571 GGAGAGGCTAGAAGCTATTGAACGTGATCAGCGTGAGTATACTCTTGATGAAGAGGATAG 630 ||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct 421 GGAGAGGTTAGAAGCTATTGAACGTGATCAGCGTGAGTACACTCTTGATGAAGAGGATAA 480 Query 631 AAAGGTGCAAGATGTTATTTTGAAACAAGAATCTACTAGAGAAGCTGCTACATCGGTTTT 690 ||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||| Sbjct 481 AAAGGTGCAAGATGTTATTTTGAAACAAGAATCCACTAGAGAAGCAGCTACATCGGTTTT 540 Query 691 AAAGAAGACGCTCTCTCGTTCATACCCGAACATGGGGTTCTGCGAAGCGCTTAAAACCGA 750 |||||| ||||| |||||||| ||||||||||||||||||||| ||||||||||||| || Sbjct 541 AAAGAAAACGCTTTCTCGTTCCTACCCGAACATGGGGTTCTGCCAAGCGCTTAAAACAGA 600 Query 751 GGAGGAGAAACTGCAACTTGAGTTGCAACGTTCGCGGGCGCGGTATGATGCTGATCAATG 810 |||||||||||||||||||||||| || |||||||||||||||||||||||||||||||| Sbjct 601 GGAGGAGAAACTGCAACTTGAGTTACATCGTTCGCGGGCGCGGTATGATGCTGATCAATG 660 Query 811 TGAAGTTATACAACGTTTGATTGATGTTACACAAACTGCTGCTACT---GTTGAACCTAA 867 ||||||||||||||||||||||||||||||||||||||||||| || ||||||||||| Sbjct 661 TGAAGTTATACAACGTTTGATTGATGTTACACAAACTGCTGCTTCTTCTGTTGAACCTAA 720 Query 868 TCTTGAAAAGGTGTTGACTAAGAAAGAAGAGCTTACCTCTAGCAAGAAGAGAGATGATTT 927 |||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 721 TCTTGAAAAGGTTTTGACTAAGAAAGAAGAGCTTACCTCTAGCAAGAAGAAAGATGATTT 780 Query 928 GTATGACACGGATAGTAG-TAG-TATTCGAGCAGATTCAAGATCAACGTCTTATGTTTCA 985 |||||||||||||||| | | || | | | || | ||||||||||||||||||||| Sbjct 781 GTATGACACGGATAGTTGGTCTCTAAT-G-GTTGAATGTAGATCAACGTCTTATGTTTCA 838 Query 986 TCCGGACATGAACTACTTTCGGGAAGATCATTGCAACACCGTGGAAATTGGCACGCCGAC 1045 ||||||||||||||||||||||||||||||| |||||||| || |||||||||||||||| Sbjct 839 TCCGGACATGAACTACTTTCGGGAAGATCATCGCAACACCATGAAAATTGGCACGCCGAC 898 Query 1046 TTGCTGGATTGTTGTTCAGAACCTTGTCTTTGCTTGAAGACACTCTTTTTCCCCTGTGGT 1105 ||||||||||||||||||||||||||||||||||| |||||| |||||||||| |||||| Sbjct 899 TTGCTGGATTGTTGTTCAGAACCTTGTCTTTGCTTCAAGACATTCTTTTTCCCGTGTGGT 958 Query 1106 ACATTGGCAAAGATTTCCACTGTGGCAACT-AGTAGGCAAATCTCTTCAACTGAAGTGTG 1164 ||||||||||||||||| ||| |||||||| | |||||||||||||||||||||| ||| Sbjct 959 ACATTGGCAAAGATTTCTACTATGGCAACTGAC-AGGCAAATCTCTTCAACTGAAGCGTG 1017 Query 1165 TAAGAACCTAATCGTGTATTCTTTGATACTCTCATGCTGTTGCTATACTTGCTGCATAAG 1224 |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1018 TAAGAACCTAATGGTGTATTCTTTGATACTCTCATGCTGTTGCTATACTTGCTGCATAAG 1077 Query 1225 GAAGAAGCTTCGAAAGACACTGAACATAACGGGAGGGTGCATTGACGACTTTTTGTCACA 1284 |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 1078 GAAGAAGCTTCGAAAGACTCTGAACATAACGGGAGGGTGCATTGACGACTTTTTGTCACA 1137 Query 1285 TCTAATGTGTTGTTGTTGTGCCCTTGTCCAAGAACTGAGAGAAGTCGAGATTCATCGAGC 1344 ||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||| Sbjct 1138 TCTAATGTGTTGTTGTTGTGCCCTTGTCCAAGAACTGAGAGAAGTCGAGATTCGTGGAGT 1197 Query 1345 TTCTTACGGTACAGAGAAGAGTAATAAGGAAATGAGTCCACCAACACCTCAGTTTATGGA 1404 ||||||||||||||||| || ||||||||||||||||||||||||||||||||| ||||| Sbjct 1198 TTCTTACGGTACAGAGATGAATAATAAGGAAATGAGTCCACCAACACCTCAGTTCATGGA 1257 Query 1405 AGAATGA-GACTTGTCCAGCACGAAACAGAACCCAGTTATTATGATGAAATGAATCTTCT 1463 ||||||| | |||||||| |||||||||||| |||| ||| ||||||||||||||||| Sbjct 1258 AGAATGATG-CTTGTCCAACACGAAACAGAATTGAGTTTTTACGATGAAATGAATCTTCT 1316 Query 1464 TATTTCATTGTTGACATTAAGATTTAACGTAAATTAGTTTGGGAAAAATACTCCATAGAG 1523 |||||||||||||||| |||||||||||||||||||| ||||||||||||||||||| Sbjct 1317 AATTTCATTGTTGACATCGCGATTTAACGTAAATTAGTTTTGGAAAAATACTCCATAGAG 1376 Query 1524 ATTCTAAAACCTTCCTTATTCTATACTAGATGCAAATAGGTGACAAATCATTGTTAACAA 1583 ||| || ||| ||||||| ||||||||| |||||| ||||| |||| ||| ||| |||| Sbjct 1377 ATTTTAGAACGTTCCTTACTCTATACTACATGCAATTAGGTAACAACTCAATGTAAACAG 1436 Query 1584 TAGACCTTTTGAAGAAGAAAAACAAACATTTGTGGTTGAATTTGTAAGTTATA 1636 |||||||||||||||| |||| || ||| ||||||||||| ||||||||| Sbjct 1437 TAGACCTTTTGAAGAA-AAAATCA----TTTATGGTTGAATTTATAAGTTATA 1484 > Ahg491044 jgi|Araly1|491044|fgenesh2_kg.7__477__AT4G35920.1 Length=1926 Score = 767 bits (415), Expect = 0.0 Identities = 991/1260 (79%), Gaps = 76/1260 (6%) Strand=Plus/Plus Query 153 GAAGAGAAATGGCTA-ATTCATGGGATCAGT-TAGGAGAAATTGCGTCAGTGGCTCAGCT 210 |||| |||||| | | ||||||||||| || | ||||| || ||||||||||| ||||| Sbjct 410 GAAG-GAAATGTC-ACATTCATGGGAT-GGTCTTGGAGAGATCGCGTCAGTGGCGCAGCT 466 Query 211 TACAGGCATAGACGCTC-TGAAACTGATTGGAATGATAG-TAAACGCTGCGAATACAGCT 268 || || |||| || | | || ||||||| | |||| |||| ||||| ||||| ||| Sbjct 467 CACTGGTTTAGATGC-CGTCAAGTTGATTGGCCTTATAGTTAAA-GCTGCCAATACTGCT 524 Query 269 CGAATGCACAAGAAGAATTGTCGTCAATTCGCTCACCATCTTAAGCTCATCCGTAATTTG 328 | |||||||||||||||||||| ||||||||||| ||||| || ||||| | |||||| Sbjct 525 TGGATGCACAAGAAGAATTGTCGCCAATTCGCTCAACATCTCAAACTCATTGGGAATTTG 584 Query 329 CTAGAGCAGATTAAAAACTCTGAGATGAATCAACGT-T-CAGAGATTCTTGAGCCGCTTC 386 || |||||| | || | |||||||||||| || || | |||||| || ||||| | || Sbjct 585 CTTGAGCAGCTGAAGATCTCTGAGATGAA-GAA-GTATCCAGAGACTCGAGAGCCTC-TC 641 Query 387 -AAGGACTTGATGATGCTCTT-AGAAGATCTTACATTTTAGTCAAAAGTTGTCA-AGAAA 443 |||| || || |||||| || || || |||||| || | ||||| || ||| | || Sbjct 642 GAAGGGCTCGAGGATGCT-TTGAGGAGGTCTTACCTTCTGGTCAATAGCTGT-AGGGACC 699 Query 444 AAAGTTATCTTTACTTGTTGGCTATGGGCTGGAACATTGTTAACCAGTTTGA-AAAAGC- 501 || ||||||||||||||||||||||| |||||||||||| ||||| || | ||| | Sbjct 700 GGAGCTATCTTTACTTGTTGGCTATGGGTTGGAACATTGTTTACCAG-TTCAGGAAA-CA 757 Query 502 TCAGAATGAGATTGATCTG-TTTCTCAAGATCGTTCCACTAATAAATATGGCGGATAATG 560 |||| |||||||||||| | ||||| |||||| | || || || | | ||| |||||| | Sbjct 758 TCAGGATGAGATTGATC-GTTTTCTTAAGATCATACCTCTCATCACTTTGGTGGATAACG 816 Query 561 CTCGGATTCGGGAGAGGCTAGAAG-CTATTGAACGTGATCAGCGTGAGTATACTCTTGAT 619 |||| |||||||||||| | | || |||||| ||||||||||||||||| ||||| ||| Sbjct 817 CTCGCATTCGGGAGAGGTTTG-AGTATATTGACCGTGATCAGCGTGAGTACACTCTGGAT 875 Query 620 GAAGAGGATAGAAAGGTGCAAGATGTTATTTTGAAACAAGAATCTACTAGAGAAGCTGCT 679 |||||||||||| | ||||||||||||||||||||||||||||| || |||||||| || Sbjct 876 GAAGAGGATAGACATGTGCAAGATGTTATTTTGAAACAAGAATCCACCAGAGAAGCAGC- 934 Query 680 ACATCGGTTTTAAAGAAGACGCTCTCTCGTTCATACCCGAACATGGGGTTCTGCGAAGCG 739 | || || | |||||||| |||||| | |||||||| ||| || | ||||| ||||| Sbjct 935 A--TCAGTGCTGAAGAAGACTCTCTCTTGCTCATACCCTAACTTGCGTTTCTGTGAAGCT 992 Query 740 CTTAAAACCGAGGAGGAGAAACTGCAACTTGAG-TTGCAACGTTCGCGGGCGCGGTATGA 798 || ||||| || | ||||||||||| ||||| || || ||||||| || || ||||| Sbjct 993 CTCAAAACAGAAAACGAGAAACTGCAGCTTGAACTT-CAGCGTTCGCAGGAGCATTATGA 1051 Query 799 TGCT-GATCAATGTGAAGTTATACAACGTTTGATTGATGTTACACAAACTGCTGCTACTG 857 || | | ||| |||||||| || || ||||| |||| |||||||||| |||||||| ||| Sbjct 1052 TG-TAGCTCAGTGTGAAGTCATTCAGCGTTTAATTGGTGTTACACAAGCTGCTGCTGCTG 1110 Query 858 TTGAACCTAA-TCTTGAAAAGGTGTTGACTAAGAAAG-----AA-------GAGCTTACC 904 |||||||| | ||| || |||| | |||| ||||||| || |||| || | Sbjct 1111 TTGAACCTGACTCT-GAGAAGGAGCTGACAAAGAAAGCTTCGAAAAAATCTGAGCGTAGC 1169 Query 905 TCTAGCAAGAAGAGAGA-TGATTTGTATGAC-ACGGAT------A-GTA--GTAGTATTC 953 || |||| ||||| ||| | ||| ||||||| | | || | | | | |||| || Sbjct 1170 TCAAGCATGAAGACAGAAT-ATTCGTATGACGAAG-ATTCTCCCAAGAAAAGCAGTAGTC 1227 Query 954 GAGCAGATTCAAGATCAACGTCTTATGTTTCATCCGGACATGAACTACTTTCGGGAAGAT 1013 | |||| ||| ||||| || ||| |||||||||| || ||||| || ||||| ||||| Sbjct 1228 GTGCAGCTTCCAGATCCACTTCTAATGTTTCATCTGGGCATGATCTGCTTTCACGAAGAG 1287 Query 1014 CATT---G---CAACACCGTGGA-AATTGGCACGCCGACTTGCTGGATTGTTGTTCAGAA 1066 ||| | ||||||| || | ||| |||| ||||||| || | |||||| || ||| Sbjct 1288 CATCACAGGTACAACACCATGAAGAAT-GGCATACCGACTTACTAGCTTGTTGCTCGGAA 1346 Query 1067 CCTTGTCTTTGCTTGAAGACACTCTTTTTCCCCTGTGGTACATTGGCAAAGATTTCCACT 1126 |||| |||||||||||||||| |||||||||| |||||||| |||||||||||| ||||| Sbjct 1347 CCTTCTCTTTGCTTGAAGACATTCTTTTTCCCGTGTGGTACTTTGGCAAAGATTGCCACT 1406 Query 1127 GTGGCAACTAGTAGGCAAATCTCTTCAACTGAAGTGTGTAA-GAACCTAATCGTGTATTC 1185 | ||| ||| ||||| ||||||||| |||||| ||||| || | |||| | |||||| Sbjct 1407 GCAGCATCTAACAGGCACATCTCTTCAGCTGAAGCATGTAATGAGC-TAATGGCGTATTC 1465 Query 1186 TTTGATACTCTCATGCTGTTGCTATACTTGCTGCATAAGGAAGAAGCTTCGAAAGACACT 1245 ||||||||| || || || ||||||||||| ||| |||||| ||| || || |||||||| Sbjct 1466 TTTGATACTTTCGTGTTGCTGCTATACTTGTTGCGTAAGGAGGAAACTCCGGAAGACACT 1525 Query 1246 GAACATAACGGGAGGGTGCATTGACGACTTTT-TGTCACATCTAATGTGTTGTTGTTGTG 1304 |||||| |||||||||| ||||||||| |||| | || ||||| ||||||||||| |||| Sbjct 1526 GAACATCACGGGAGGGTTCATTGACGA-TTTTCTATCTCATCTGATGTGTTGTTGCTGTG 1584 Query 1305 CCCTTGTCCAAGAACTGAGAGAAGTCGAGATTCATCGAGCTTCTTACGGTACAGAGAAGA 1364 | ||||||||||||||||||||||| ||||||| | | |||| | ||||| ||||||| Sbjct 1585 CTCTTGTCCAAGAACTGAGAGAAGTAGAGATTCGTGGGGCTTAT---GGTACGGAGAAGA 1641 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 63039355475 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5