BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G17800.1
Length=1265
Score E
Sequences producing significant alignments: (Bits) Value
Ahg480678 jgi|Araly1|480678|fgenesh2_kg.3__3379__AT2G17800.1 989 0.0
Ahg491041 jgi|Araly1|491041|fgenesh2_kg.7__474__AT4G35950.1 813 0.0
> Ahg480678 jgi|Araly1|480678|fgenesh2_kg.3__3379__AT2G17800.1
Length=1036
Score = 989 bits (535), Expect = 0.0
Identities = 680/742 (92%), Gaps = 42/742 (6%)
Strand=Plus/Plus
Query 414 ACGTACGTAGCTCCATTTCTGGTGGAGAAGGAAGAAGAAGAGAAATGAGCGCTTCGAGGT 473
||||||||||||||||||||||| || ||||||||||||||||||||||||||||
Sbjct 312 ACGTACGTAGCTCCATTTCTGGT------GG-AGAAGAAGAGAAATGAGCGCTTCGAGGT 364
Query 474 TCATAAAGTGTGTCACCGTTGGCGACGGAGCTGTTGGTAAAACCTGTTTGCTGATTTCTT 533
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 365 TCATAAAGTGCGTCACCGTTGGCGACGGAGCTGTTGGTAAAACCTGTTTGCTGATTTCTT 424
Query 534 ACACCAGCAACACTTTTCCTACGGATTATGTACCGACTGTTTTCGATAACTTTAGCGCAA 593
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 425 ACACCAGCAACACTTTTCCTACGGATTATGTACCGACTGTTTTCGATAACTTTAGCGCAA 484
Query 594 ATGTGGTTGTTAATGGAGCCACTGTGAATCTTGGGCTATGGGATACCGCAGGGCAGGAGG 653
|||||||||||||||||||||| ||||| || || | ||||||||||||||||||||||
Sbjct 485 ATGTGGTTGTTAATGGAGCCACGGTGAACCTAGGATTGTGGGATACCGCAGGGCAGGAGG 544
Query 654 ATTATAACAGATTAAGACCTTTGAGTTACCGCGGTGCTGATGTTTTCATCTTAGCATTCT 713
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 545 ATTATAACAGATTAAGACCTTTGAGTTACCGCGGTGCTGACGTTTTCATCTTAGCATTCT 604
Query 714 CTCTTATCAGTAAGGCTAGTTATGAGAATGTCTCCAAGAAGTGGATCCCAGAGCTGAAGC 773
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 605 CTCTTATCAGTAAGGCTAGTTATGAGAATGTTTCCAAGAAGTGGATCCCAGAGCTGAAGC 664
Query 774 ATTATGCCCCTGGTGTCCCTATAGTTCTTGTTGGAACCAAACTAGATCTTCGGGATGACA 833
| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 665 ACTATGCCCCTGGTGTCCCAATAGTTCTTGTTGGAACCAAACTAGATCTTCGGGATGACA 724
Query 834 AACAGTTCTTCATTGACCACCCTGGCGCTGTACCAATTACTACTGCTCAGGGAGAGGAAC 893
|||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||
Sbjct 725 AACAGTTCTTCATTGACCACCCTGGCGCTGTACCTATTACCACTGCTCAGGGAGAGGAAC 784
Query 894 TGAAGAAACTAATTGGAGCTCCCGCATACATCGAGTGCAGTTCAAAAACACA--AG--A- 948
||||||| |||||||||||||| ||||||||||||||||||||||||||||| || |
Sbjct 785 TGAAGAAGCTAATTGGAGCTCCTGCATACATCGAGTGCAGTTCAAAAACACAGGAGGCAA 844
Query 949 GAA-C------------------GTGAAAGGAGTATTTGATGCAGCGATCCGAGTGGTTC 989
||| | |||||||| ||||||||||||||||||||||||||||
Sbjct 845 GAAACAAAAACTTCCCTTTTAACGTGAAAGGTGTATTTGATGCAGCGATCCGAGTGGTTC 904
Query 990 TTCAACCTCCaaagcagaagaaaaagaaaagcaaagcacaaaaagcCTGCTCCATTTTGT 1049
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 905 TTCAACCTCCAAAGCAGAAGAAAAAGAAAAGCAAAGCACAAAAAGCCTGCTCCATTTTGT 964
Query 1050 AATttctctacgcttctcttacgtatctctctctgtctc-tctgtctcttccactcttct 1108
|||||||||||| || || || ||||||||||||||| || |||||| | | ||
Sbjct 965 AATTTCTCTACGTTT-TCCTA---ATCTCTCTCTGTCTCATCCA-CTCTTC---T-T-CT 1014
Query 1109 AGTGAAGGCTTAAGAAGAAAAC 1130
||||||||||||||||||||||
Sbjct 1015 AGTGAAGGCTTAAGAAGAAAAC 1036
Score = 163 bits (88), Expect = 3e-39
Identities = 94/97 (97%), Gaps = 0/97 (0%)
Strand=Plus/Plus
Query 4 GCAAAACAATCGGAGAAAGTTGATGGAGGAGATTGTTCGTTTTGTGAACGCTTCAATGGC 63
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1 GCAAAACAATCGGAGAAAGTTGATGGAGGAGATTGTTCGTATTGTGAACGCTTCAATGGC 60
Query 64 ATAAATTTCCGGCCATCACATTTCTTCTACTTTCTCT 100
|||||||||||||||||||||||| ||||||| ||||
Sbjct 61 ATAAATTTCCGGCCATCACATTTCCTCTACTTCCTCT 97
> Ahg491041 jgi|Araly1|491041|fgenesh2_kg.7__474__AT4G35950.1
Length=1026
Score = 813 bits (440), Expect = 0.0
Identities = 546/598 (91%), Gaps = 4/598 (1%)
Strand=Plus/Plus
Query 457 AATGAGCGCTTCGAGGTTCATAAAGTGTGTCACCGTTGGCGACGGAGCTGTTGGTAAAAC 516
|||||||||||| |||||||||||||||||||||||||| || |||||||||||||||||
Sbjct 250 AATGAGCGCTTCAAGGTTCATAAAGTGTGTCACCGTTGGTGATGGAGCTGTTGGTAAAAC 309
Query 517 CTGTTTGCTGATTTCTTACACCAGCAACACTTTTCCTACGGATTATGTACCGACTGTTTT 576
|||||||||||| || |||||||||||||||||||| ||||||||||| || ||||||||
Sbjct 310 CTGTTTGCTGATCTCCTACACCAGCAACACTTTTCCCACGGATTATGTTCCCACTGTTTT 369
Query 577 CGATAACTTTAGCGCAAATGTGGTTGTTAATGGAGCCACTGTGAATCTTGGGCTATGGGA 636
|||||||||||| |||||||||||||||||||||||||| ||||||||||| | |||||
Sbjct 370 CGATAACTTTAGTGCAAATGTGGTTGTTAATGGAGCCACCGTGAATCTTGGATTGTGGGA 429
Query 637 TACCGCAGGGCAGGAGGATTATAACAGATTAAGACCTTTGAGTTACCGCGGTGCTGATGT 696
||| |||||||| ||||| ||||||||||||||||||||||||||||||||||| |||||
Sbjct 430 TACTGCAGGGCAAGAGGACTATAACAGATTAAGACCTTTGAGTTACCGCGGTGCCGATGT 489
Query 697 TTTCAT-CTTAGCATTCTCTCTTATCAGTAAGGCTAGTTATGAGAATGTCTCCAAGAAGT 755
|||||| ||| || |||||||| || ||||||||||||||||||||||| ||||||||||
Sbjct 490 TTTCATTCTT-GCCTTCTCTCTCATTAGTAAGGCTAGTTATGAGAATGTTTCCAAGAAGT 548
Query 756 GGATCCCAGAGCTGAAGCATTATGCCCCTGGTGTCCCTATAGTTCTTGTTGGAACCAAAC 815
||||||||||| ||||||| ||||| ||||||||||| || || || |||||||||||||
Sbjct 549 GGATCCCAGAGTTGAAGCACTATGCTCCTGGTGTCCCAATTGTCCTCGTTGGAACCAAAC 608
Query 816 TAGATCTTCGGGATGACAAACAGTTCTTCATTGACCACCCTGGCGCTGTACCAATTACTA 875
| ||||||||||||||||||||||||||||| ||||| ||||| ||||| || ||||| |
Sbjct 609 TTGATCTTCGGGATGACAAACAGTTCTTCATCGACCATCCTGGTGCTGTCCCTATTACCA 668
Query 876 CTGCTCAGGGAGAGGAACTGAAGAAACTAATTGGAGCTCCCGCATACATCGAGTGCAGTT 935
|||||||||||||||| || ||||| ||||||||||| || || ||||||||||||||||
Sbjct 669 CTGCTCAGGGAGAGGAGCTTAAGAAGCTAATTGGAGCACCTGCTTACATCGAGTGCAGTT 728
Query 936 CAAAAACACAAGAGAACGTGAAAGGAGTATTTGATGCAGCGATCCGAGTGGTTCTTCAAC 995
||||| |||||||||||||||| || || ||||||||||||||| ||||||| |||||||
Sbjct 729 CAAAATCACAAGAGAACGTGAAGGGCGTGTTTGATGCAGCGATCAGAGTGGTCCTTCAAC 788
Query 996 CTCCaaagcagaagaaaaagaa-aagcaaagcacaaaaagcCTGCTCCATTTTGTAAT 1052
|||||||||||||||||||||| || |||||||||||| |||||||||||||||||||
Sbjct 789 CTCCAAAGCAGAAGAAAAAGAAGAA-CAAAGCACAAAAGGCCTGCTCCATTTTGTAAT 845
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 47272417080
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5