BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT2G17800.1

Length=1265
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg480678 jgi|Araly1|480678|fgenesh2_kg.3__3379__AT2G17800.1         989    0.0  
  Ahg491041 jgi|Araly1|491041|fgenesh2_kg.7__474__AT4G35950.1          813    0.0  


> Ahg480678 jgi|Araly1|480678|fgenesh2_kg.3__3379__AT2G17800.1
Length=1036

 Score =  989 bits (535),  Expect = 0.0
 Identities = 680/742 (92%), Gaps = 42/742 (6%)
 Strand=Plus/Plus

Query  414   ACGTACGTAGCTCCATTTCTGGTGGAGAAGGAAGAAGAAGAGAAATGAGCGCTTCGAGGT  473
             |||||||||||||||||||||||      || ||||||||||||||||||||||||||||
Sbjct  312   ACGTACGTAGCTCCATTTCTGGT------GG-AGAAGAAGAGAAATGAGCGCTTCGAGGT  364

Query  474   TCATAAAGTGTGTCACCGTTGGCGACGGAGCTGTTGGTAAAACCTGTTTGCTGATTTCTT  533
             |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  365   TCATAAAGTGCGTCACCGTTGGCGACGGAGCTGTTGGTAAAACCTGTTTGCTGATTTCTT  424

Query  534   ACACCAGCAACACTTTTCCTACGGATTATGTACCGACTGTTTTCGATAACTTTAGCGCAA  593
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  425   ACACCAGCAACACTTTTCCTACGGATTATGTACCGACTGTTTTCGATAACTTTAGCGCAA  484

Query  594   ATGTGGTTGTTAATGGAGCCACTGTGAATCTTGGGCTATGGGATACCGCAGGGCAGGAGG  653
             |||||||||||||||||||||| ||||| || ||  | ||||||||||||||||||||||
Sbjct  485   ATGTGGTTGTTAATGGAGCCACGGTGAACCTAGGATTGTGGGATACCGCAGGGCAGGAGG  544

Query  654   ATTATAACAGATTAAGACCTTTGAGTTACCGCGGTGCTGATGTTTTCATCTTAGCATTCT  713
             |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct  545   ATTATAACAGATTAAGACCTTTGAGTTACCGCGGTGCTGACGTTTTCATCTTAGCATTCT  604

Query  714   CTCTTATCAGTAAGGCTAGTTATGAGAATGTCTCCAAGAAGTGGATCCCAGAGCTGAAGC  773
             ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct  605   CTCTTATCAGTAAGGCTAGTTATGAGAATGTTTCCAAGAAGTGGATCCCAGAGCTGAAGC  664

Query  774   ATTATGCCCCTGGTGTCCCTATAGTTCTTGTTGGAACCAAACTAGATCTTCGGGATGACA  833
             | ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct  665   ACTATGCCCCTGGTGTCCCAATAGTTCTTGTTGGAACCAAACTAGATCTTCGGGATGACA  724

Query  834   AACAGTTCTTCATTGACCACCCTGGCGCTGTACCAATTACTACTGCTCAGGGAGAGGAAC  893
             |||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||
Sbjct  725   AACAGTTCTTCATTGACCACCCTGGCGCTGTACCTATTACCACTGCTCAGGGAGAGGAAC  784

Query  894   TGAAGAAACTAATTGGAGCTCCCGCATACATCGAGTGCAGTTCAAAAACACA--AG--A-  948
             ||||||| |||||||||||||| |||||||||||||||||||||||||||||  ||  | 
Sbjct  785   TGAAGAAGCTAATTGGAGCTCCTGCATACATCGAGTGCAGTTCAAAAACACAGGAGGCAA  844

Query  949   GAA-C------------------GTGAAAGGAGTATTTGATGCAGCGATCCGAGTGGTTC  989
             ||| |                  |||||||| ||||||||||||||||||||||||||||
Sbjct  845   GAAACAAAAACTTCCCTTTTAACGTGAAAGGTGTATTTGATGCAGCGATCCGAGTGGTTC  904

Query  990   TTCAACCTCCaaagcagaagaaaaagaaaagcaaagcacaaaaagcCTGCTCCATTTTGT  1049
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  905   TTCAACCTCCAAAGCAGAAGAAAAAGAAAAGCAAAGCACAAAAAGCCTGCTCCATTTTGT  964

Query  1050  AATttctctacgcttctcttacgtatctctctctgtctc-tctgtctcttccactcttct  1108
             |||||||||||| || || ||   ||||||||||||||| ||   ||||||   | | ||
Sbjct  965   AATTTCTCTACGTTT-TCCTA---ATCTCTCTCTGTCTCATCCA-CTCTTC---T-T-CT  1014

Query  1109  AGTGAAGGCTTAAGAAGAAAAC  1130
             ||||||||||||||||||||||
Sbjct  1015  AGTGAAGGCTTAAGAAGAAAAC  1036


 Score =  163 bits (88),  Expect = 3e-39
 Identities = 94/97 (97%), Gaps = 0/97 (0%)
 Strand=Plus/Plus

Query  4   GCAAAACAATCGGAGAAAGTTGATGGAGGAGATTGTTCGTTTTGTGAACGCTTCAATGGC  63
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct  1   GCAAAACAATCGGAGAAAGTTGATGGAGGAGATTGTTCGTATTGTGAACGCTTCAATGGC  60

Query  64  ATAAATTTCCGGCCATCACATTTCTTCTACTTTCTCT  100
           |||||||||||||||||||||||| ||||||| ||||
Sbjct  61  ATAAATTTCCGGCCATCACATTTCCTCTACTTCCTCT  97


> Ahg491041 jgi|Araly1|491041|fgenesh2_kg.7__474__AT4G35950.1
Length=1026

 Score =  813 bits (440),  Expect = 0.0
 Identities = 546/598 (91%), Gaps = 4/598 (1%)
 Strand=Plus/Plus

Query  457   AATGAGCGCTTCGAGGTTCATAAAGTGTGTCACCGTTGGCGACGGAGCTGTTGGTAAAAC  516
             |||||||||||| |||||||||||||||||||||||||| || |||||||||||||||||
Sbjct  250   AATGAGCGCTTCAAGGTTCATAAAGTGTGTCACCGTTGGTGATGGAGCTGTTGGTAAAAC  309

Query  517   CTGTTTGCTGATTTCTTACACCAGCAACACTTTTCCTACGGATTATGTACCGACTGTTTT  576
             |||||||||||| || |||||||||||||||||||| ||||||||||| || ||||||||
Sbjct  310   CTGTTTGCTGATCTCCTACACCAGCAACACTTTTCCCACGGATTATGTTCCCACTGTTTT  369

Query  577   CGATAACTTTAGCGCAAATGTGGTTGTTAATGGAGCCACTGTGAATCTTGGGCTATGGGA  636
             |||||||||||| |||||||||||||||||||||||||| |||||||||||  | |||||
Sbjct  370   CGATAACTTTAGTGCAAATGTGGTTGTTAATGGAGCCACCGTGAATCTTGGATTGTGGGA  429

Query  637   TACCGCAGGGCAGGAGGATTATAACAGATTAAGACCTTTGAGTTACCGCGGTGCTGATGT  696
             ||| |||||||| ||||| ||||||||||||||||||||||||||||||||||| |||||
Sbjct  430   TACTGCAGGGCAAGAGGACTATAACAGATTAAGACCTTTGAGTTACCGCGGTGCCGATGT  489

Query  697   TTTCAT-CTTAGCATTCTCTCTTATCAGTAAGGCTAGTTATGAGAATGTCTCCAAGAAGT  755
             |||||| ||| || |||||||| || ||||||||||||||||||||||| ||||||||||
Sbjct  490   TTTCATTCTT-GCCTTCTCTCTCATTAGTAAGGCTAGTTATGAGAATGTTTCCAAGAAGT  548

Query  756   GGATCCCAGAGCTGAAGCATTATGCCCCTGGTGTCCCTATAGTTCTTGTTGGAACCAAAC  815
             ||||||||||| ||||||| ||||| ||||||||||| || || || |||||||||||||
Sbjct  549   GGATCCCAGAGTTGAAGCACTATGCTCCTGGTGTCCCAATTGTCCTCGTTGGAACCAAAC  608

Query  816   TAGATCTTCGGGATGACAAACAGTTCTTCATTGACCACCCTGGCGCTGTACCAATTACTA  875
             | ||||||||||||||||||||||||||||| ||||| ||||| ||||| || ||||| |
Sbjct  609   TTGATCTTCGGGATGACAAACAGTTCTTCATCGACCATCCTGGTGCTGTCCCTATTACCA  668

Query  876   CTGCTCAGGGAGAGGAACTGAAGAAACTAATTGGAGCTCCCGCATACATCGAGTGCAGTT  935
             |||||||||||||||| || ||||| ||||||||||| || || ||||||||||||||||
Sbjct  669   CTGCTCAGGGAGAGGAGCTTAAGAAGCTAATTGGAGCACCTGCTTACATCGAGTGCAGTT  728

Query  936   CAAAAACACAAGAGAACGTGAAAGGAGTATTTGATGCAGCGATCCGAGTGGTTCTTCAAC  995
             ||||| |||||||||||||||| || || ||||||||||||||| ||||||| |||||||
Sbjct  729   CAAAATCACAAGAGAACGTGAAGGGCGTGTTTGATGCAGCGATCAGAGTGGTCCTTCAAC  788

Query  996   CTCCaaagcagaagaaaaagaa-aagcaaagcacaaaaagcCTGCTCCATTTTGTAAT  1052
             |||||||||||||||||||||| || |||||||||||| |||||||||||||||||||
Sbjct  789   CTCCAAAGCAGAAGAAAAAGAAGAA-CAAAGCACAAAAGGCCTGCTCCATTTTGTAAT  845



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 47272417080


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5