BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT2G17800.1 Length=1265 Score E Sequences producing significant alignments: (Bits) Value Ahg480678 jgi|Araly1|480678|fgenesh2_kg.3__3379__AT2G17800.1 989 0.0 Ahg491041 jgi|Araly1|491041|fgenesh2_kg.7__474__AT4G35950.1 813 0.0 > Ahg480678 jgi|Araly1|480678|fgenesh2_kg.3__3379__AT2G17800.1 Length=1036 Score = 989 bits (535), Expect = 0.0 Identities = 680/742 (92%), Gaps = 42/742 (6%) Strand=Plus/Plus Query 414 ACGTACGTAGCTCCATTTCTGGTGGAGAAGGAAGAAGAAGAGAAATGAGCGCTTCGAGGT 473 ||||||||||||||||||||||| || |||||||||||||||||||||||||||| Sbjct 312 ACGTACGTAGCTCCATTTCTGGT------GG-AGAAGAAGAGAAATGAGCGCTTCGAGGT 364 Query 474 TCATAAAGTGTGTCACCGTTGGCGACGGAGCTGTTGGTAAAACCTGTTTGCTGATTTCTT 533 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 365 TCATAAAGTGCGTCACCGTTGGCGACGGAGCTGTTGGTAAAACCTGTTTGCTGATTTCTT 424 Query 534 ACACCAGCAACACTTTTCCTACGGATTATGTACCGACTGTTTTCGATAACTTTAGCGCAA 593 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 425 ACACCAGCAACACTTTTCCTACGGATTATGTACCGACTGTTTTCGATAACTTTAGCGCAA 484 Query 594 ATGTGGTTGTTAATGGAGCCACTGTGAATCTTGGGCTATGGGATACCGCAGGGCAGGAGG 653 |||||||||||||||||||||| ||||| || || | |||||||||||||||||||||| Sbjct 485 ATGTGGTTGTTAATGGAGCCACGGTGAACCTAGGATTGTGGGATACCGCAGGGCAGGAGG 544 Query 654 ATTATAACAGATTAAGACCTTTGAGTTACCGCGGTGCTGATGTTTTCATCTTAGCATTCT 713 |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct 545 ATTATAACAGATTAAGACCTTTGAGTTACCGCGGTGCTGACGTTTTCATCTTAGCATTCT 604 Query 714 CTCTTATCAGTAAGGCTAGTTATGAGAATGTCTCCAAGAAGTGGATCCCAGAGCTGAAGC 773 ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 605 CTCTTATCAGTAAGGCTAGTTATGAGAATGTTTCCAAGAAGTGGATCCCAGAGCTGAAGC 664 Query 774 ATTATGCCCCTGGTGTCCCTATAGTTCTTGTTGGAACCAAACTAGATCTTCGGGATGACA 833 | ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 665 ACTATGCCCCTGGTGTCCCAATAGTTCTTGTTGGAACCAAACTAGATCTTCGGGATGACA 724 Query 834 AACAGTTCTTCATTGACCACCCTGGCGCTGTACCAATTACTACTGCTCAGGGAGAGGAAC 893 |||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||| Sbjct 725 AACAGTTCTTCATTGACCACCCTGGCGCTGTACCTATTACCACTGCTCAGGGAGAGGAAC 784 Query 894 TGAAGAAACTAATTGGAGCTCCCGCATACATCGAGTGCAGTTCAAAAACACA--AG--A- 948 ||||||| |||||||||||||| ||||||||||||||||||||||||||||| || | Sbjct 785 TGAAGAAGCTAATTGGAGCTCCTGCATACATCGAGTGCAGTTCAAAAACACAGGAGGCAA 844 Query 949 GAA-C------------------GTGAAAGGAGTATTTGATGCAGCGATCCGAGTGGTTC 989 ||| | |||||||| |||||||||||||||||||||||||||| Sbjct 845 GAAACAAAAACTTCCCTTTTAACGTGAAAGGTGTATTTGATGCAGCGATCCGAGTGGTTC 904 Query 990 TTCAACCTCCaaagcagaagaaaaagaaaagcaaagcacaaaaagcCTGCTCCATTTTGT 1049 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 905 TTCAACCTCCAAAGCAGAAGAAAAAGAAAAGCAAAGCACAAAAAGCCTGCTCCATTTTGT 964 Query 1050 AATttctctacgcttctcttacgtatctctctctgtctc-tctgtctcttccactcttct 1108 |||||||||||| || || || ||||||||||||||| || |||||| | | || Sbjct 965 AATTTCTCTACGTTT-TCCTA---ATCTCTCTCTGTCTCATCCA-CTCTTC---T-T-CT 1014 Query 1109 AGTGAAGGCTTAAGAAGAAAAC 1130 |||||||||||||||||||||| Sbjct 1015 AGTGAAGGCTTAAGAAGAAAAC 1036 Score = 163 bits (88), Expect = 3e-39 Identities = 94/97 (97%), Gaps = 0/97 (0%) Strand=Plus/Plus Query 4 GCAAAACAATCGGAGAAAGTTGATGGAGGAGATTGTTCGTTTTGTGAACGCTTCAATGGC 63 |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct 1 GCAAAACAATCGGAGAAAGTTGATGGAGGAGATTGTTCGTATTGTGAACGCTTCAATGGC 60 Query 64 ATAAATTTCCGGCCATCACATTTCTTCTACTTTCTCT 100 |||||||||||||||||||||||| ||||||| |||| Sbjct 61 ATAAATTTCCGGCCATCACATTTCCTCTACTTCCTCT 97 > Ahg491041 jgi|Araly1|491041|fgenesh2_kg.7__474__AT4G35950.1 Length=1026 Score = 813 bits (440), Expect = 0.0 Identities = 546/598 (91%), Gaps = 4/598 (1%) Strand=Plus/Plus Query 457 AATGAGCGCTTCGAGGTTCATAAAGTGTGTCACCGTTGGCGACGGAGCTGTTGGTAAAAC 516 |||||||||||| |||||||||||||||||||||||||| || ||||||||||||||||| Sbjct 250 AATGAGCGCTTCAAGGTTCATAAAGTGTGTCACCGTTGGTGATGGAGCTGTTGGTAAAAC 309 Query 517 CTGTTTGCTGATTTCTTACACCAGCAACACTTTTCCTACGGATTATGTACCGACTGTTTT 576 |||||||||||| || |||||||||||||||||||| ||||||||||| || |||||||| Sbjct 310 CTGTTTGCTGATCTCCTACACCAGCAACACTTTTCCCACGGATTATGTTCCCACTGTTTT 369 Query 577 CGATAACTTTAGCGCAAATGTGGTTGTTAATGGAGCCACTGTGAATCTTGGGCTATGGGA 636 |||||||||||| |||||||||||||||||||||||||| ||||||||||| | ||||| Sbjct 370 CGATAACTTTAGTGCAAATGTGGTTGTTAATGGAGCCACCGTGAATCTTGGATTGTGGGA 429 Query 637 TACCGCAGGGCAGGAGGATTATAACAGATTAAGACCTTTGAGTTACCGCGGTGCTGATGT 696 ||| |||||||| ||||| ||||||||||||||||||||||||||||||||||| ||||| Sbjct 430 TACTGCAGGGCAAGAGGACTATAACAGATTAAGACCTTTGAGTTACCGCGGTGCCGATGT 489 Query 697 TTTCAT-CTTAGCATTCTCTCTTATCAGTAAGGCTAGTTATGAGAATGTCTCCAAGAAGT 755 |||||| ||| || |||||||| || ||||||||||||||||||||||| |||||||||| Sbjct 490 TTTCATTCTT-GCCTTCTCTCTCATTAGTAAGGCTAGTTATGAGAATGTTTCCAAGAAGT 548 Query 756 GGATCCCAGAGCTGAAGCATTATGCCCCTGGTGTCCCTATAGTTCTTGTTGGAACCAAAC 815 ||||||||||| ||||||| ||||| ||||||||||| || || || ||||||||||||| Sbjct 549 GGATCCCAGAGTTGAAGCACTATGCTCCTGGTGTCCCAATTGTCCTCGTTGGAACCAAAC 608 Query 816 TAGATCTTCGGGATGACAAACAGTTCTTCATTGACCACCCTGGCGCTGTACCAATTACTA 875 | ||||||||||||||||||||||||||||| ||||| ||||| ||||| || ||||| | Sbjct 609 TTGATCTTCGGGATGACAAACAGTTCTTCATCGACCATCCTGGTGCTGTCCCTATTACCA 668 Query 876 CTGCTCAGGGAGAGGAACTGAAGAAACTAATTGGAGCTCCCGCATACATCGAGTGCAGTT 935 |||||||||||||||| || ||||| ||||||||||| || || |||||||||||||||| Sbjct 669 CTGCTCAGGGAGAGGAGCTTAAGAAGCTAATTGGAGCACCTGCTTACATCGAGTGCAGTT 728 Query 936 CAAAAACACAAGAGAACGTGAAAGGAGTATTTGATGCAGCGATCCGAGTGGTTCTTCAAC 995 ||||| |||||||||||||||| || || ||||||||||||||| ||||||| ||||||| Sbjct 729 CAAAATCACAAGAGAACGTGAAGGGCGTGTTTGATGCAGCGATCAGAGTGGTCCTTCAAC 788 Query 996 CTCCaaagcagaagaaaaagaa-aagcaaagcacaaaaagcCTGCTCCATTTTGTAAT 1052 |||||||||||||||||||||| || |||||||||||| ||||||||||||||||||| Sbjct 789 CTCCAAAGCAGAAGAAAAAGAAGAA-CAAAGCACAAAAGGCCTGCTCCATTTTGTAAT 845 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 47272417080 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5