BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT2G17840.1 Length=1731 Score E Sequences producing significant alignments: (Bits) Value Ahg480683 jgi|Araly1|480683|fgenesh2_kg.3__3384__AT2G17840.1 2459 0.0 > Ahg480683 jgi|Araly1|480683|fgenesh2_kg.3__3384__AT2G17840.1 Length=1641 Score = 2459 bits (1331), Expect = 0.0 Identities = 1514/1602 (95%), Gaps = 13/1602 (1%) Strand=Plus/Plus Query 32 CCGATTTGAAATCGCCGGCGAAAATGGAATCCTCCGGCGACAAGCAAACTTCTTCTCTTT 91 ||||||||||||| ||| ||| ||||||| ||||||||||||||||| |||| ||||| | Sbjct 1 CCGATTTGAAATCTCCGACGACAATGGAACCCTCCGGCGACAAGCAAGCTTCATCTCTCT 60 Query 92 ACCCTACTGTTGACACATCCAATCCCGAAGCTCCTATAAACCCTAGCTCATCATCTTCTA 151 ||||||||||||||||||| ||||||||||||||||||||||||| ||| ||||| |||| Sbjct 61 ACCCTACTGTTGACACATCGAATCCCGAAGCTCCTATAAACCCTACCTCTTCATCATCTA 120 Query 152 CTAACAATCTCTATCCTTCTCTCGATATGAATGATCTCGCTCGTAATCTCTTCCCTGAAC 211 |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 121 CTAATAATCTCTATCCTTCTCTCGATATGAATGATCTCGCTCGTAATCTCTTCCCTGAGC 180 Query 212 AACCAGAGACGAGTT-CTATTCCGGTTTCAGCTCCTCCCGCTGCGACGGAGGAAGTAATT 270 |||| |||||||||| | | ||| |||| |||||||| || |||||||||||||||||| Sbjct 181 AACCGGAGACGAGTTCCGA-TCCCGTTTTGGCTCCTCCTGCAGCGACGGAGGAAGTAATT 239 Query 271 TTGAAAATCTCCGGCGCGATTCTTCATTTAATCGACAAATCTTACAGCGTCGAGCTCGCT 330 |||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||| Sbjct 240 TTGAAAATCTCCGGCGCGATTCTTCACTTAATCGACACATCTTACAGCGTCGAGCTCGCT 299 Query 331 TGCGGTGATCTTGAGATCATCCGTATTGTTCAAGGAGAGAATGTTGTCGCTGTTCTCGCT 390 ||||| |||||| |||||||||||||||||||||||| ||||||||||||||||| ||| Sbjct 300 TGCGGCGATCTTTCGATCATCCGTATTGTTCAAGGAGATAATGTTGTCGCTGTTCTTGCT 359 Query 391 AGTGTCT-CCGATGAGATTCAATGGCCGTTGACTAAGGATGAGAACTCTGTCAAGGTCGA 449 |||| | |||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 360 CGTGT-TGGAGATGAGATTCAATGGCCGTTGACTAAGGATGAGAACTCCGTCAAGGTCGA 418 Query 450 TGAGTCTCATTACTTCTTCACGCTTCGTCCTACCAAAGAGATCTCACATGATTCAAGCGA 509 ||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||| Sbjct 419 TGAGTCTCATTACTTCTTCACGCTTCGTCCTACCAAAGAAATCACACATGATTCAAGCGA 478 Query 510 CGAAGAAGACGGAGATGGAGGGAAAAACACTAACGAGATGTTGAACTACGGACTTACAAT 569 || || || |||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 479 CG-AG--GA---AGATGGAGCGAAAAACACTAACGAGATGTTGAACTACGGACTTACAAT 532 Query 570 TGCTTCTAAAGGTCAAGAGCATTTACTGGTGGAGCTTGAGAAGATCTTGGAGGATTATAG 629 |||||| ||||||||||||||||| |||||||||||||||||||||||||||||||| || Sbjct 533 TGCTTCCAAAGGTCAAGAGCATTTGCTGGTGGAGCTTGAGAAGATCTTGGAGGATTACAG 592 Query 630 TAGTTTCTCTGTGCAGGAGGTGTCAGAGGAAGCGAAGGAAGCAGGTGAAAAGGTTTTGGA 689 | ||||| | |||||||| ||||| |||||||||||||||||||| |||||||||||||| Sbjct 593 TTGTTTCACGGTGCAGGAAGTGTCGGAGGAAGCGAAGGAAGCAGGGGAAAAGGTTTTGGA 652 Query 690 TGTGACGGTGGCGAGAGAGACGTCTCCGGTGGAGCTTACTGGGGAAAGGAAAGAGATTGT 749 ||||||||||||||||||||| || ||||||||||||||||| || |||||||||||||| Sbjct 653 TGTGACGGTGGCGAGAGAGACATCGCCGGTGGAGCTTACTGGAGAGAGGAAAGAGATTGT 712 Query 750 GGAGAGGCAATGTTCTGCTTATTGGACTACTTTGGCTCCGAATGTGGAGGATTATAGCGG 809 ||||||||||||||| ||||||||||| ||||| |||||||||||||||||||||||||| Sbjct 713 GGAGAGGCAATGTTCGGCTTATTGGACGACTTTAGCTCCGAATGTGGAGGATTATAGCGG 772 Query 810 GAAGGCGGCGAAGCTGATTGCAACTGGCTCAGGACATTTGATAAAAGGGATTCTTTGGTG 869 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 773 GAAGGCGGCGAAGCTGATTGCAACTGGCTCAGGACATTTGATAAAAGGGATTCTTTGGTG 832 Query 870 TGGAGATGTGACTATGGATAGGCTTATTTGGGGAAATGGTTTCATGAAAAGGAGGTTGTC 929 |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 833 TGGAGATGTGACTATGGATAGGCTAATTTGGGGAAATGGTTTCATGAAAAGGAGGTTGTC 892 Query 930 AAAGGCTGAGAAGGAGAGTGAAGTTCACCCTGACACCTTGAAAAGAATCAGAAGAGTGAA 989 ||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||| Sbjct 893 AAAGGCTGAGAAGGAGAGTGAAGTTCACCCTGACACCTTGAAAAGGATCAGGAGAGTGAA 952 Query 990 GAGGATGACCAAAATGACAGAGAGTGTAGCAAACAGCATACTGTCTGGAGTCCTTAAAGT 1049 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 953 GAGGATGACCAAAATGACAGAGAGTGTAGCAAACAGCATACTGTCTGGAGTCCTTAAAGT 1012 Query 1050 TTCTGGATTCTTCACAAGTTCAGTGGCAAACACCAAAGTAGGAAAGAAATTCTTCAGCCT 1109 |||||||||||||||||||||||||||||||||||||||||||||||||||||| || || Sbjct 1013 TTCTGGATTCTTCACAAGTTCAGTGGCAAACACCAAAGTAGGAAAGAAATTCTTTAGTCT 1072 Query 1110 TCTTCCTGGAGAAGTCATCCTTGCATCTCTTGACGGATTCAATAAGGTCTGTGACGCTGT 1169 |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 1073 TCTTCCTGGAGAAGTCATCCTTGCATCTCTTGACGGATTCAATAAGGTCTGTGATGCTGT 1132 Query 1170 TGAAGTAGCTGGGAGGAATGTAATGTCAACCTCTTCCACTGTTACAACCGAACTCGTTGA 1229 |||||||||||||||||||||||||||||||||||||||||| ||||| ||||| ||||| Sbjct 1133 TGAAGTAGCTGGGAGGAATGTAATGTCAACCTCTTCCACTGTCACAACTGAACTTGTTGA 1192 Query 1230 TCACAAGTATGGTGGTAAAGCGGCTGAGGCGACAAACGAAGGGCTCGATGCAGCAGGATA 1289 |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 1193 TCACAAGTATGGTGGTAAAGCGGCTGAGGCAACAAACGAAGGGCTCGATGCAGCAGGATA 1252 Query 1290 TGCGCTTGGCACAGCCTGGGTTGCTTTCAAAATAAGAAAGGCTATTAACCCGAAGAGTGT 1349 |||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 1253 TGCGATTGGCACAGCCTGGGTTGCTTTCAAAATCAGAAAGGCTATTAACCCGAAGAGTGT 1312 Query 1350 ACTCAAGCCTTCGACGCTTGCAAAAACCGCCATTAGATCTGCAGCTTCACaaaaaaaaGC 1409 |||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||| Sbjct 1313 ACTCAAGCCTTCGACGCTTGCAAAGACCGCCATTAGATCTGCAGCTTCACAAAAGAAAGC 1372 Query 1410 CTAGTAAGGCTG-CCTGATGAAGCAAAACAGACTCATTGGTCCTGTTTGTTTGTATCGTC 1468 ||| |||||| ||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 1373 GTAGGAAGGCTTTCCTGATGAAGCAAAACAGACTCATTTGTCCTGTTTGTTTGTATCGTC 1432 Query 1469 TTGTTGTCTTTTGATAAATAAGTTAAACTAAAAAGAGGTGTGGATTAGTAGTTGTTGTGA 1528 |||||||||||||||| | |||| ||||| |||||||||||||||||||||||||||||| Sbjct 1433 TTGTTGTCTTTTGATACAGAAGTAAAACTGAAAAGAGGTGTGGATTAGTAGTTGTTGTGA 1492 Query 1529 AGTGTTTATGTTTCTCTATGAGAATCATGTAATGTCTCTGATTTGATTCGGAATATGTGC 1588 ||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||| Sbjct 1493 AGTGTTTATGTTTCTCTATGAGAATCATGTAATGTCTCTGAGTTGATACGGAATATGTGC 1552 Query 1589 TGTATGTGTAAGT-GGTCAAATCAAGATTCCTTGAAATTAGT 1629 ||||||||||||| || ||||||||||||||||||||| ||| Sbjct 1553 TGTATGTGTAAGTTGGCCAAATCAAGATTCCTTGAAAT-AGT 1593 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 64943867725 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5