BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT2G17880.1 Length=970 Score E Sequences producing significant alignments: (Bits) Value Ahg480688 jgi|Araly1|480688|fgenesh2_kg.3__3389__AT2G17880.1 861 0.0 > Ahg480688 jgi|Araly1|480688|fgenesh2_kg.3__3389__AT2G17880.1 Length=752 Score = 861 bits (466), Expect = 0.0 Identities = 648/732 (89%), Gaps = 28/732 (4%) Strand=Plus/Plus Query 62 TGACCCAACCCGGTTCGATTTTGCTTAACCGGACAAGATACATTAATCTGCCTAATCTTC 121 |||||||||||||||||| ||||||||||||||| | || | | | ||||||| Sbjct 40 TGACCCAACCCGGTTCGACTTTGCTTAACCGGAC-A-AT--A-T-A-------AATCTTC 86 Query 122 AATTATTTAAAAGCTAACTAAACGTTATACGTACTAATCACTTCTTCCCCTAT-AAATAA 180 ||||||||||||||||||||||||||| ||||||||||||||||||||| ||| |||||| Sbjct 87 AATTATTTAAAAGCTAACTAAACGTTAAACGTACTAATCACTTCTTCCCTTATAAAATAA 146 Query 181 A-CCTTTCTAATTTCTCATCTCAAATCACACTGCATCACAAAAC-CCAAATCGGAACTTA 238 | ||| |||||||||||||||| || | | |||||| | || |||||| ||| Sbjct 147 AGCCTCTCTAATTTCTCATCTC-CTTC-CTC-AAATCACACTGCATCACATCGGAGCTTT 203 Query 239 AACCAAAAGACAAACA-AAAACGCCGTCGTTTCACGATGctttcttcttccccaaccttc 297 |||||||| | ||| | |||||||||||||||||| ||||| ||||||||| ||| |||| Sbjct 204 AACCAAAAAATAAAAATAAAACGCCGTCGTTTCACAATGCTCTCTTCTTCCTCAAGCTTC 263 Query 298 ttcgctactccatttctctcttcttcttcttcttcttctccgtcgttctcttctacttcA 357 |||||||| ||| | | || || |||||||||||||||||| |||||||| || |||| Sbjct 264 TTCGCTACCCCA--T-T-TC-TC-TCTTCTTCTTCTTCTCCGCCGTTCTCTCCTGTTTCA 317 Query 358 CCACCGTCACGCATTTCCCGGATCTCGCCGTCGCTTTCTACAACCACCGCGTCCTACACC 417 ||||||||||| ||| ||||||||||||||| |||||| |||| ||||| ||||||||| Sbjct 318 CCACCGTCACGTGTTTTCCGGATCTCGCCGTCTCTTTCTGCAACAACCGCATCCTACACC 377 Query 418 TGCGCCGAAGATCTACCGAGATTACGCCAAATCCCGCAGCGATTTTCAGCAACCGCGTCT 477 |||||||| |||| |||||||||||||||||| ||||||||||||||||| ||||||||| Sbjct 378 TGCGCCGATGATCCACCGAGATTACGCCAAATTCCGCAGCGATTTTCAGCGACCGCGTCT 437 Query 478 CTCTACGAGATCCTTGAAATTCCCGTCGGCTCGACGAGTCAAGAGATCAAATCAGCTTAC 537 ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 438 CTCTACGAGATCCTTGAAATTCCCGTCGGCTCGACGAGTCAAGAGATCAAATCGGCTTAC 497 Query 538 CGGCGACTAGCCAGGATCTGTCATCCCGATGTAGCGAGAAATAGTCGGGATAACTCGTCG 597 || ||| |||| |||||||||||||||||||||||| ||||||||||| ||| ||||||| Sbjct 498 CGACGATTAGCTAGGATCTGTCATCCCGATGTAGCGGGAAATAGTCGGAATAGCTCGTCG 557 Query 598 GCGGACGA-TTTCATGAAGATCCACGCAGCGTATTGCACGCTTTCGGATCCCGAGAAACG 656 |||||||| ||| |||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 558 GCGGACGAATTT-ATGAAGATCCACGCGGCGTATTGCACGCTTTCGGATCCCGAGAAACG 616 Query 657 CGCCGTTTATGATCGGAGGACTCTTCTTCGGAGCCGGCCGTTAACGGCTGGATACGGCAG 716 |||||||||||||||||||| ||||| |||||||||||||||||| |||||||||||||| Sbjct 617 CGCCGTTTATGATCGGAGGAATCTTCGTCGGAGCCGGCCGTTAACTGCTGGATACGGCAG 676 Query 717 TTACGGTGGACGGAATTGGGAAACCGATCAGTGCTGGTAGCGAGTTGACTCGATGTGTCG 776 |||||| ||||||||||||||||| ||||||||||||||||||||||||||| | ||||| Sbjct 677 TTACGGCGGACGGAATTGGGAAACTGATCAGTGCTGGTAGCGAGTTGACTCGGTTTGTCG 736 Query 777 AGTTGGTCCAAA 788 ||||| ||||| Sbjct 737 AGTTGACCCAAA 748 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 36026156565 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5