BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G17970.1
Length=1797
Score E
Sequences producing significant alignments: (Bits) Value
Ahg480695 jgi|Araly1|480695|fgenesh2_kg.3__3396__AT2G17970.1 2569 0.0
Ahg917629 jgi|Araly1|917629|Al_scaffold_0008_2380 1168 0.0
> Ahg480695 jgi|Araly1|480695|fgenesh2_kg.3__3396__AT2G17970.1
Length=1784
Score = 2569 bits (1391), Expect = 0.0
Identities = 1679/1812 (93%), Gaps = 43/1812 (2%)
Strand=Plus/Plus
Query 1 ACACTGACAAAAGAGTACTAGATTTCAAATCGTGGACTAGGAAA-TTTGAATTTTCTGTA 59
||||||||||||||||||| |||| |||||||||||||| |||| |||||||||||||||
Sbjct 1 ACACTGACAAAAGAGTACTCGATTCCAAATCGTGGACTAAGAAATTTTGAATTTTCTGTA 60
Query 60 ACAAGAGTACTAGATTTGGATTGTATCGAGCGTATCTCATGGAAAACGATCCATTTCTCC 119
||||||| | |||| || ||||| |||||||| ||| |||||| ||||| |||||||||
Sbjct 61 ACAAGAGGATTAGA-TTCGATTGAATCGAGCGAATCAAATGGAAGACGATTCATTTCTCC 119
Query 120 GGCAGTACCAGCCGTCGGAGCTTAAGATCGCTTCGGAGTTTCTGACGAATTGGCTTCCTT 179
||||||||||||||||||| |||||||||| |||||| ||||||||||||||||||||||
Sbjct 120 GGCAGTACCAGCCGTCGGAACTTAAGATCGTTTCGGAATTTCTGACGAATTGGCTTCCTT 179
Query 180 TTTTATCTAAAGATCTATGCAAGGATTGTAATCACCTTCTCTCCAATCGAATCCGTTCTC 239
| |||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||
Sbjct 180 TCTTATCTAAAGATCTATGCGAGGACTGTAATCACCTTCTCTCCAATCGAATCCGTTCTC 239
Query 240 TTGACCCAGCACATTGTAGTAACAACACTGACAAAGTTGATGGAGAGTGTAAAACTGGTT 299
||||||||| ||||||||||||| ||| || ||||||||||||||||||||||||||||
Sbjct 240 TTGACCCAGGACATTGTAGTAAC-ACA--GATAAAGTTGATGGAGAGTGTAAAACTGGTT 296
Query 300 CTTGTTCAGTGGTGGAAAATATGGGATCAGAAAGAGCTAGTAACAATGTGGATGATAATT 359
|| |||| ||||||| || ||||||||||||||||| |||||||| ||||||||
Sbjct 297 CTGGTTCGGTGGTGGGAACTATGGGATCAGAAAGAGTTAGTAACAGTGTGGATG------ 350
Query 360 ATGATGAGAAGTCGGAAAATGGCGAAGACTGTGATAATCATTCGTTAGGTAGTTGGAAGG 419
| | ||||||||||| |||||||||||||||||||||||||||||| ||||||| |
Sbjct 351 --G-T---AAGTCGGAAAAGGGCGAAGACTGTGATAATCATTCGTTAGGTGGTTGGAA-G 403
Query 420 GA-AGTGAAATTGTATTTGGTTCC-TTTCCTGAAGATTTTA-GTAGTGTATTGCAATCTA 476
|| ||||||||||||||||||||| ||| |||||| ||||| |||||||| ||| ||||
Sbjct 404 GAGAGTGAAATTGTATTTGGTTCCATTT-CTGAAG-TTTTAGGTAGTGTACTGCCCTCTA 461
Query 477 GACCAGCTGTTGTTGAAACAGCAAGCCCTCGTATG-CGTTGGGCTGATATGGCACAAGAG 535
||||||||||||||||||||||||||||||| ||| | ||||||||||||| ||||||||
Sbjct 462 GACCAGCTGTTGTTGAAACAGCAAGCCCTCGGATGTC-TTGGGCTGATATGACACAAGAG 520
Query 536 GATGAGTTCGAT-gaggaggaggaggaggaggaagaggagagggaTTCGAGTAGGAAAGG 594
||||| | | | || ||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 521 GATGA-TGAGTTCGACGAGGAGGAGGAGGAGGAAGAGCAGAGGGATTCGAGTAGGAAAGG 579
Query 595 TTTTGATGCGAGTTCGATGAAGACTCCAGAGAAGCCTAAGTTGTCTAGAGATCAGAGAGA 654
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 580 TTTTGATGCGAGTTCGATGAGGACTCCAGAGAAGCCTAAGTTGTCTAGAGATCAGAGAGA 639
Query 655 GAATCTCAGGCTGATTAATGTGAAGAGAAAGAAAGACTTTATTTGCTTGGAGAGAGTTAA 714
|||||| |||||||| ||||||||||||||||||||||| ||||| ||||||||||||||
Sbjct 640 GAATCTTAGGCTGATGAATGTGAAGAGAAAGAAAGACTTCATTTGTTTGGAGAGAGTTAA 699
Query 715 GGGAAAGATTGTTAACGTGCTTGATGGACTTGAGTTGCACACTGGTGTTTTTAGCGCAGT 774
||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 700 GGGAAAGATCGTTAATGTGCTTGATGGACTTGAGTTGCACACTGGTGTTTTTAGCGCTGT 759
Query 775 GGAGCAGAAACGGATTGTTGATCAAGTGTATCAACTTCAAGAGAAGGGACGAAGAGGAGA 834
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 760 GGAGCAGAAACGGATTGTTGATCAAGTGTATCAACTTCAAGAGAAGGGACGAAAAGGAGA 819
Query 835 ACTTAAAAAGCGTACATTTACTGCTCCACATAAGTGGATGAGAGGAAAAGGACGTGAGAC 894
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 820 ACTTAAAAAGCGTACATTTACTGCTCCACATAAGTGGATGAGAGGCAAAGGACGTGAGAC 879
Query 895 TATACAATTTGGCTGTTGCTACAACTACGCTCCAGACAGAGCTGGAAACCCACCGGGTAT 954
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 880 TATACAATTTGGCTGTTGTTACAACTACGCTCCAGACAGAGCTGGAAACCCACCGGGTAT 939
Query 955 CCTTCAACGTGAAGAAGTGGATCCACTACCTCATCTTTTCAAAGTAATCATTAGAAAGTT 1014
||||||||||||||||||||||||| |||||| |||||||||||||||||| |||| |||
Sbjct 940 CCTTCAACGTGAAGAAGTGGATCCATTACCTCCTCTTTTCAAAGTAATCATAAGAAGGTT 999
Query 1015 GATTAAATGGCATGTACTGCCTCCAACTTGTGTGCCCGATAGCTGCATTGTGAACATCTA 1074
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1000 GATTAAATGGCATGTACTGCCTCCAACTTGTGTGCCCGATAGCTGCATTGTAAACATCTA 1059
Query 1075 TGATGAAGGTGACTGCATACCTCCTCACATCGACAACCACGACTTTCTCCGTCCCTTCTG 1134
|||||||||||||||||||||||| |||||||||||||| |||||||| ||||| |||||
Sbjct 1060 TGATGAAGGTGACTGCATACCTCCGCACATCGACAACCATGACTTTCTGCGTCCGTTCTG 1119
Query 1135 TACCATCTCTTTCCTCAGTGAATGCGATATCCTCTTTGGCTCAAACCTGAAAGTTGAGGG 1194
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1120 CACCATCTCTTTCCTCAGTGAATGCGATATCCTCTTTGGCTCAAACCTGAATGTTGAGGG 1179
Query 1195 TCCTGGTGACTTCTCGGGTTCATACTCAATACCGCTTCCTGTGGGATCAGTTCTGGTGTT 1254
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1180 TCCTGGTGAATTCTCGGGTTCATACTCAATACCGCTTCCTGTGGGATCAGTTCTGGTGTT 1239
Query 1255 AAATGGAAATGGAGCTGATGTAGCTAAGCACTGTGTACCTGCAGTTCCTACAAAAAGGAT 1314
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1240 AAATGGAAATGGAGCTGATGTAGCTAAGCACTGTGTACCTGCAGTTCCCACAAAAAGGAT 1299
Query 1315 ATCAATTACATTTAGGAAAATGGATGAGTCGAAACGCCCGGTTTGGTTCACCCCAGAGCC 1374
|||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1300 ATCAATCACATTTAGGAAAATGGATGAGTCAAAACGCCCGGTTTGGTTCACCCCAGAGCC 1359
Query 1375 TGATTTGCAAGGGATTGAGCCATTGCCATTGGACCTGAACCGGTCTGGTTCTACTTCAAG 1434
||||||||||||||| ||||||||||||||||| |||||||| ||||||||| |||||||
Sbjct 1360 TGATTTGCAAGGGATCGAGCCATTGCCATTGGAGCTGAACCGCTCTGGTTCTGCTTCAAG 1419
Query 1435 GTTCTCAAGATTAAACAACCATAACGGTACTAACCAAAGAGGACATGGACGTAGAGGAGG 1494
|| |||| |||| |||||||||||| | ||||||| ||||||||||||||||||| ||||
Sbjct 1420 GTCCTCAGGATTTAACAACCATAACAGCACTAACCGAAGAGGACATGGACGTAGACGAGG 1479
Query 1495 AGGCAATGGTTATGACTCAAGAGGTTACTATAATCCTGAGAGAAGCAGTGAACACAATGA 1554
||||||| ||||||| |||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1480 AGGCAATAGTTATGAGTCAAGAGGTTACTATAATCCTGAGAGAAGCAGTGAACAGAATGA 1539
Query 1555 CTCTGGAGACTGGCCATCAAGCCAGAGAAGAGGAATGCCACGTCCTAGTAGAAGAAACTA 1614
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1540 CTCTGGAGACTGGCCATCAAGCCAGAGAAGAGGAATGCCACGTCCTAGTAGAAGAAACTA 1599
Query 1615 CGGTTAAATTCTTCAACTTCTGAAACTGAAATTTATAAGTTCTTTATTTAATTAACCAAT 1674
||||||||||||| ||||||||| |||||||||||| ||||||| |||| |||||||||
Sbjct 1600 AGGTTAAATTCTTCTACTTCTGAAGCTGAAATTTATAGGTTCTTTCTTTATTTAACCAAT 1659
Query 1675 TTTCCATATAAATAATTAATTTGTGCAACATATAT-ACATAA-GT-CTTGAAtttttttt 1731
||||||||| || |||||||||||||||||| | ||| || || || |||||||||
Sbjct 1660 TTTCCATAT---TA-TTAATTTGTGCAACATATTTTACACAACGTTCT-GAATTTTTT-- 1712
Query 1732 caaacaattatttatgtccggggta-tttttatat-----ccgtttttgaatttttGACC 1785
||||||||| ||||||||||||||| ||||| | | ||| ||||||||||||||||
Sbjct 1713 CAAACAATTTTTTATGTCCGGGGTAGTTTTTTTTTTTTTTCCGATTTTGAATTTTTGACC 1772
Query 1786 GTATTTGTAATT 1797
||||||||||||
Sbjct 1773 GTATTTGTAATT 1784
> Ahg917629 jgi|Araly1|917629|Al_scaffold_0008_2380
Length=909
Score = 1168 bits (632), Expect = 0.0
Identities = 763/827 (92%), Gaps = 5/827 (1%)
Strand=Plus/Plus
Query 570 aggagagggaTTCGAGTAGGAAAGGTTTTGATGCGAGTTCGATGAAGACTCCAGAGAAGC 629
|||||||||||||| |||||||||||||||||||||||||||| |||||| |||||||
Sbjct 65 AGGAGAGGGATTCGGGTAGGAAAGGTTTTGATGCGAGTTCGAT---GACTCCCGAGAAGC 121
Query 630 CTAAGTTGTCTAGAGATCAGAGAGAGAATCTCAGGCTGATTAATGTGAAGAGAAAGAAAG 689
| |||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||
Sbjct 122 CGAAGTTGTCTAGAGAGCAGAGAGAGAATCTCAGGCTGATGCATGTGAAGAGAAAGAAAG 181
Query 690 ACTTTATTTGC-TTGGAGAGAGTTAAGGGAAAGATTGTTAACGTGCTTGATGGACTTGAG 748
|||| |||||| || ||||||||||||| |||||| ||||||||||||||||||||||||
Sbjct 182 ACTTCATTTGCATT-GAGAGAGTTAAGGAAAAGATCGTTAACGTGCTTGATGGACTTGAG 240
Query 749 TTGCACACTGGTGTTTTTAGCGCAGTGGAGCAGAAACGGATTGTTGATCAAGTGTATCAA 808
|| ||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 241 TTACACACTGGTGTGTTTAGCGCAGTGGAGCAGAAACGGATTGTAAATCAAGTGTATCAA 300
Query 809 CTTCAAGAGAAGGGACGAAGAGGAGAACTTAAAAAGCGTACATTTACTGCTCCACATAAG 868
||||||||||||||||||| ||||||||||| | ||| |||||||| |||||||| |||
Sbjct 301 CTTCAAGAGAAGGGACGAAAAGGAGAACTTAGAGAGCATACATTTAATGCTCCACGGAAG 360
Query 869 TGGATGAGAGGAAAAGGACGTGAGACTATACAATTTGGCTGTTGCTACAACTACGCTCCA 928
||||||||||| |||||||||| ||||||||||||||| ||||| |||||||||||| |
Sbjct 361 TGGATGAGAGGCAAAGGACGTGTGACTATACAATTTGGTTGTTGTTACAACTACGCTATA 420
Query 929 GACAGAGCTGGAAACCCACCGGGTATCCTTCAACGTGAAGAAGTGGATCCACTACCTCAT 988
|| ||||||||||||||||| |||||||||||||||||||||||||||||| ||||||
Sbjct 421 GATAGAGCTGGAAACCCACCTGGTATCCTTCAACGTGAAGAAGTGGATCCATTACCTCCG 480
Query 989 CTTTTCAAAGTAATCATTAGAAAGTTGATTAAATGGCATGTACTGCCTCCAACTTGTGTG 1048
||||||||||| || ||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 481 CTTTTCAAAGTGATGATTAGAAGGTTGATTAAATGGCATGTACTGCCTCCAACTTGTGTG 540
Query 1049 CCCGATAGCTGCATTGTGAACATCTATGATGAAGGTGACTGCATACCTCCTCACATCGAC 1108
|||||||| |||||||| ||||| ||||||||||||||||| ||||| ||||| |||||
Sbjct 541 CCCGATAGTTGCATTGTTAACATATATGATGAAGGTGACTGTATACCACCTCATATCGAT 600
Query 1109 AACCACGACTTTCTCCGTCCCTTCTGTACCATCTCTTTCCTCAGTGAATGCGATATCCTC 1168
|||||||||||||||||||| ||||| ||||||||||||||||||||||| ||||||||
Sbjct 601 AACCACGACTTTCTCCGTCCGTTCTGCACCATCTCTTTCCTCAGTGAATGTGATATCCTT 660
Query 1169 TTTGGCTCAAACCTGAAAGTTGAGGGTCCTGGTGACTTCTCGGGTTCATACTCAATACCG 1228
|||||||||||||||||| ||| ||||||||||| ||||||||| ||||||||||||||
Sbjct 661 TTTGGCTCAAACCTGAAAACTGAAGGTCCTGGTGAATTCTCGGGTCCATACTCAATACCG 720
Query 1229 CTTCCTGTGGGATCAGTTCTGGTGTTAAATGGAAATGGAGCTGATGTAGCTAAGCACTGT 1288
|||||||| ||||||||||||||||||||||||||||| ||||||||||| |||||||||
Sbjct 721 CTTCCTGTCGGATCAGTTCTGGTGTTAAATGGAAATGGGGCTGATGTAGCCAAGCACTGT 780
Query 1289 GTACCTGCAGTTCCTACAAAAAGGATATCAATTACATTTAGGAAAATGGATGAGTCGAAA 1348
|||||||||||||| ||||||||||||||||| |||||||||||||||||||| ||||||
Sbjct 781 GTACCTGCAGTTCCCACAAAAAGGATATCAATCACATTTAGGAAAATGGATGAATCGAAA 840
Query 1349 CGCCCGGTTTGGTTCACCCCAGAGCCTGATTTGCAAGGGATTGAGCC 1395
||||||||||||||||| |||||||||||||||||||| || |||||
Sbjct 841 CGCCCGGTTTGGTTCACTCCAGAGCCTGATTTGCAAGGAATCGAGCC 887
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 67457823895
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5