BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT2G18050.1 Length=763 Score E Sequences producing significant alignments: (Bits) Value Ahg480711 jgi|Araly1|480711|fgenesh2_kg.3__3412__AT2G18050.1 1029 0.0 > Ahg480711 jgi|Araly1|480711|fgenesh2_kg.3__3412__AT2G18050.1 Length=707 Score = 1029 bits (557), Expect = 0.0 Identities = 676/729 (93%), Gaps = 25/729 (3%) Strand=Plus/Plus Query 1 AGATAGAGACAAGACAAGCAAAGCAACACTTTCACTAATCCTCTAATGGCAGAAGACAAG 60 ||||||||||||||||| |||||||||||||||||||||||||| ||||| ||||| ||| Sbjct 1 AGATAGAGACAAGACAAACAAAGCAACACTTTCACTAATCCTCTTATGGCCGAAGAGAAG 60 Query 61 ATCTTAAAGAAGACTCCGGCGGCGAAGAAGCCGCGAAAACCGAAAACCACCACTCATCCT 120 | ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 61 ACCTTGAAGAAGACTCCGGCGGCGAAGAAGCCGCGAAAACCGAAAACCACCACTCATCCT 120 Query 121 CCATACTTTCAGATGATAAAAGAGGCTTTGATGG-TCCTGAAAGAGAAGAACGGATCAAG 179 |||||||||||||||||||||||||||||||||| || | |||||||||||||||||||| Sbjct 121 CCATACTTTCAGATGATAAAAGAGGCTTTGATGGCTCTT-AAAGAGAAGAACGGATCAAG 179 Query 180 CCCTTATGCTATAGCTAAGAAGATAGAGGAGAAACACAAGTCTTTACTTCCAGAGAGTTT 239 |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 180 CCCTTACGCTATAGCTAAGAAGATAGAGGAGAAACACAAGTCTTTACTTCCAGAGAGTTT 239 Query 240 CCGTAAAACACTTTCTCTACAGCTTAAAAACTCTGTTGCTAAAGGTAAGCTCGTGAAGAT 299 |||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct 240 CCGTAAAATACTTTCTCTACAGCTTAAAAACTCTGTCACTAAAGGTAAGCTCGTGAAGAT 299 Query 300 CAGAGCCTCTTACAAGCTCTCAGATACCACCAAGATGATAACGAGGC-AGCAGGACaaga 358 |||||||||||||||||||||||||||||||||||||| |||||||| | |||||||||| Sbjct 300 CAGAGCCTCTTACAAGCTCTCAGATACCACCAAGATGACAACGAGGCTA-CAGGACAAGA 358 Query 359 agaataagaagaatatgaagcaagaagataaagagatcacaaagaGGACTAGGTCTTCTT 418 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 359 AGAATAAGAAGAATATGAAGCAAGAAGATAAAGAGATCACAAAGAGGACTAGGTCTTCTT 418 Query 419 CGACAAGG-CCTAAGAAGACTGTGTCTGTGAACAAACAAGAAAAGAAGAGGAAAGTGAAG 477 |||||||| || ||||||| | |||||||||| ||||||||||||| |||||||| |||| Sbjct 419 CGACAAGGTCC-AAGAAGAGTATGTCTGTGAATAAACAAGAAAAGATGAGGAAAGCGAAG 477 Query 478 AAGGCGAGACAGCCTAAGTCTATCAAATCTTCAGTTGGTAAGAAGAAGGCCATGAAAGCT 537 |||||||||||||||||||||||||||||||||| |||||||||| | ||||||||||| Sbjct 478 AAGGCGAGACAGCCTAAGTCTATCAAATCTTCAGCTGGTAAGAAG--G-CCATGAAAGCT 534 Query 538 TCCGCTGCTTGATCACTGAGGAGGAGGAGAAGAAGATGGAACTGTGTGTGAATATGAAGA 597 |||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||| Sbjct 535 TCCGCTGCTTGATCACTGAGGAGGAGGAGAAGAAGAAGAAACTGTGTGTGAATATGAAGA 594 Query 598 ATAAGGTTTTTTGTTGTCTCTGTAAATGGATGATGACTTTGTTTTGGTTTGGTGTGGTCT 657 |||||||||||| || | | ||| || | | | | | | ||||||||||||| Sbjct 595 ATAAGGTTTTTT-TT-T-TA-GTATCTGTA--A--A-T--G----G-TTTGGTGTGGTCT 638 Query 658 CTTTTGGGTGTAAGAGTAAAGAGTCTTCGGATGTATAACCAGTACTACCATGTAATATAC 717 ||||| ||| ||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 639 CTTTTTGGTTTAAGAGTAAAGAGTCTTCGGATGTATAACTAGTACTACCATGTAATATAC 698 Query 718 TCTAAATAG 726 || |||||| Sbjct 699 TCGAAATAG 707 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 28134712746 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5