BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT2G18120.1 Length=776 Score E Sequences producing significant alignments: (Bits) Value Ahg319764 jgi|Araly1|319764|fgenesh1_pm.C_scaffold_3002780 811 0.0 > Ahg319764 jgi|Araly1|319764|fgenesh1_pm.C_scaffold_3002780 Length=627 Score = 811 bits (439), Expect = 0.0 Identities = 569/629 (90%), Gaps = 20/629 (3%) Strand=Plus/Plus Query 16 ATGGCTGGGACAGGATCATCAAGAAACAACGAAGAAGACAATCAACAAAACACAAATTGG 75 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 1 ATGGCTGGGATAGGATCATCAAGAAACAACGAAGAAGACAATCAACAAAACACAAACTGG 60 Query 76 GTTTGGTACA-AACACACCAATAATAACCTAAGTACGAGCCACAACAATCAGATATGGCA 134 |||||||||| || || |||||||||||| |||||||||||||||||||||||||||||| Sbjct 61 GTTTGGTACAGAA-ACGCCAATAATAACCCAAGTACGAGCCACAACAATCAGATATGGCA 119 Query 135 GCAGCCAAGCCTCGATCTATATCCGGGTCAGATCGACGTCTGTGATATGACCACGTCATC 194 |||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 120 GCAGCCAAGCCTGGATCTATATCCGGGTCAGATCGACGTCTGTGATTTGACCACGTCATC 179 Query 195 GAGATCTCTAACGATAAGCTGTCAAGAGTGTGGAAACCAAGCCAAGAAAGGGTGCACGCA 254 ||||| ||||| |||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 180 CAGATCCCTAACCATAAGCTGTCAAGACTGTGGAAACCAAGCCAAGAAAGGGTGCACGCA 239 Query 255 CGGGCGGTGTAGAACTTGCTGCAAGAGTAACGGACTCCACTGTCCCACCCACGTGAGGAG 314 || |||||||||||||||||||||| |||| ||||||||||| || ||||| ||||| Sbjct 240 TGGACGGTGTAGAACTTGCTGCAAGAACCACGGGCTCCACTGTCCTACTCACGTTAGGAG 299 Query 315 CACGTGGATCCCCATTGCCAAACGCCGTGAGCGGCAGCAGCAGCTACAGACGCCAACCTC 374 ||||||||||||||| ||||||||||| ||||||||||||||| |||||||||||| ||| Sbjct 300 CACGTGGATCCCCATCGCCAAACGCCGCGAGCGGCAGCAGCAGATACAGACGCCAATCTC 359 Query 375 CAACCCAACCGGCGGTAGCGGCAGAGTTGGGAA------------GTATAGAGACATTAA 422 ||||| || |||||| ||| |||||||||||| ||||||||| ||| | Sbjct 360 CAACCGAAATGGCGGTGGCGACAGAGTTGGGAACATCCCAACACCGTATAGAGAGATTGA 419 Query 423 TCAACATGCTACTTTAGACTCATCAGGGTTAGAGATGGGAGAGACAAGATTTCCAGATGA 482 ||||| |||| | ||||||||||||||||||||||||| ||| |||||||||||| Sbjct 420 TCAACCGGCTA----A--CTCATCAGGGTTAGAGATGGGAGAGGCAACATTTCCAGATGA 473 Query 483 AGTGAGCTCGGATGCACTTTTCCGATGCGTCAGAATGAGTGGTACCGATGATGGAGAGGG 542 |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 474 AGTGAGCTCGGATGCACTTTTCCGGTGCGTCAGAATGAGTGGTACCGATGATGGAGAGGG 533 Query 543 CCAATACGCATACCAAACGACGGTGGGCATAGCTGGTCATCTCTTTAAAGGAATTCTCTA 602 |||||||||||||||||||||||||||||||||||| ||||||||||| |||||||| || Sbjct 534 CCAATACGCATACCAAACGACGGTGGGCATAGCTGGCCATCTCTTTAAGGGAATTCTATA 593 Query 603 TAACCAAGGTCCAGAAAACAAGTCCATGC 631 |||||||||||| ||||||| |||||||| Sbjct 594 TAACCAAGGTCCGGAAAACATGTCCATGC 622 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 28630310667 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5