BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G18162.1
Length=1231
Score E
Sequences producing significant alignments: (Bits) Value
Ahg480722 jgi|Araly1|480722|fgenesh2_kg.3__3423__AT2G18162.1 1694 0.0
> Ahg480722 jgi|Araly1|480722|fgenesh2_kg.3__3423__AT2G18162.1
Length=1198
Score = 1694 bits (917), Expect = 0.0
Identities = 1073/1140 (94%), Gaps = 44/1140 (4%)
Strand=Plus/Plus
Query 113 CTCTTCCTCTGT-TTGTTT-TCAAGTTCTGACATCATAAATTCAGACCGAGAAAACATAA 170
|||||||||||| || ||| || |||||||||||||||||||||| ||||||||||||||
Sbjct 82 CTCTTCCTCTGTGTT-TTTATCTAGTTCTGACATCATAAATTCAGTCCGAGAAAACATAA 140
Query 171 AAATTTGAGTCTTTTGATGATCGGAAACTGATGACTCCCGTTCTCTGCGAAATCCTGCTC 230
||| |||||| |||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 141 AAAACTGAGTC-TTTGATGATCGGAAACTGATGACTCCGGTTCTCTGCGAAATCCTGCTC 199
Query 231 TCTGGGCTCACGGTCAAATCTGCTCTCTGCCGTAGAACCCATCTCGTTCAATCTTTCTCC 290
|||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 200 TCTGGGCTCACGGTTAAATCTGCTCTCTGCCGTAGAACTCATCTCGTTCAATCTTTCTCC 259
Query 291 GTCGTCTTCCTCTACTGGTTTTACAACGTTTCATGAATTGCTACAAACTCTAATTAATTT 350
|||||||||||||||||||||||||||||||||||||||| | | | ||
Sbjct 260 GTCGTCTTCCTCTACTGGTTTTACAACGTTTCATGAATTG---------C----T-A-TT 304
Query 351 TTTCAGACAGATCA-T--aaaaaaaaaCCAAACAT-AAAACATAAAACTCTGTCC-tttt 405
|||| ||||||||| | ||||||||| ||||||| ||||||||||||||||||| ||||
Sbjct 305 TTTCCGACAGATCATTAAAAAAAAAAAACAAACATAAAAACATAAAACTCTGTCCTTTTT 364
Query 406 tttGTCTTCTTGTAACTTTTCTTGTTAAAAATCAATGGCGTCATCTAGCAGCACATACCG 465
|||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 365 TTTGTCCTCTTGTAA-TTTTCTTGTTAAAAATCAATGGCGTCATCTAGCAGCACATACCG 423
Query 466 GAGCTCAAGCTCTTCCGACGGTGGTAATAATAACCCGTCGGACTCCGTCGTCACCGTCGA 525
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 424 GAGCTCGAGCTCTTCCGACGGTGGTAATAATAACCCGTCGGACTCCGTCGTCACCGTCGA 483
Query 526 CGAACGAAAACGTAAAAGAATGTTATCGAACAGAGAATCTGCACGTAGGTCAAGGATGCG 585
||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||
Sbjct 484 CGAACGAAAACGTAAAAGAATGTTATCAAACAGAGAATCTGCACGTAGATCAAGGATGCG 543
Query 586 TAAACAGAAACACGTTGATGATCTAACGGCTCAGATCAATCAGCTATCAAACGACAACCG 645
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 544 TAAACAGAAACATGTTGATGATCTAACGGCTCAGATCAATCAGCTATCAAACGACAACCG 603
Query 646 TCAGATCTTGAACAGCCTCACCGTAACATCTCAGCTTTACATGAAGATCCAAGCCGAGAA 705
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 604 TCAGATCTTGAACAGCCTCACCGTAACATCTCAGCTTTACATGAAGATCCAAGCCGAGAA 663
Query 706 CTCTGTTCTCACCGCTCAGATGGA-GGAGCTTAGCACCAGACTCCAATCTCTCAACGAGA 764
|||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||
Sbjct 664 CTCTGTTCTCACCGCTCAGATG-ACGGAGCTTAGCACCAGACTCCAATCTCTCAACGAGA 722
Query 765 TCGTTGATCTTGTTCAATCCAACGGTGCAGGATTTGGTGTTGACCAGATCGACGGCTGTG 824
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 723 TCGTTGATCTTGTTCAATCCAACGGTGCAGGATTTGGTGTTGACCAGATCGACGGCTGTG 782
Query 825 GTTTTGATGATCGTACGGTTGGGATCGACGGATATTACGATGATATGAATATGATGAGTA 884
|||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 783 GTTTCGATGATCGTACGGTTGGGATTGACGGATATTACGATGATATGAATATGATGAGTG 842
Query 885 ATGTTAATCATTGGGGTGGTTCGGTTTACACTAACCAACCCATTATGGCTAATGATATCA 944
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 843 GTGTTAATCATTGGGGTGGTTCGGTTTACACTAACCAACCTATTATGGCTAATGATATCA 902
Query 945 ATATGTATTGATTAATAAAA-TTAATTAAAATAATTAGATGCCCCttttttgtctt--tt 1001
|||||||||||||||||||| ||||||||| ||||||||||||||||||| || || ||
Sbjct 903 ATATGTATTGATTAATAAAAATTAATTAAA-TAATTAGATGCCCCTTTTT-GTTTTAATT 960
Query 1002 ta-ttttaa---aa-tttagcccattttggtgtttttGGGTTGGTGTGATGATGTAATTA 1056
|| ||||| || |||||| ||||||||||||||||||||||||||||||||||||
Sbjct 961 TAATTTTATTTTAAGTTTAGCTT-TTTTGGTGTTTTTGGGTTGGTGTGATGATGTAATTA 1019
Query 1057 TAGTACATGCATCTTTGATTGGTTGGAAGGataaatataaacttt--atatatatattgg 1114
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1020 TAGTACATGCATCTTTGATTGGTTGGAAGGATAAATATAAACTTTTTATATATATATTGG 1079
Query 1115 ggcatatatatatGAGTTGTACTTTGTCATGTATTGGTGTGTGTTTTGTTATAATTATAT 1174
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1080 GGCATATATATATGAGTTGTACTTTGTCATGTATTGGTGTGTGTTTTGTTATAATTATAT 1139
Query 1175 GATT-ATATATGTTTATGTTATCATGATTTT-GTCTTTCA-CCTTAATATTCCAATTGTT 1231
|||| |||||||||||||||||||||||||| |||||||| ||| |||||||||||||||
Sbjct 1140 GATTGATATATGTTTATGTTATCATGATTTTTGTCTTTCAACCT-AATATTCCAATTGTT 1198
Score = 71.3 bits (38), Expect = 2e-11
Identities = 40/41 (98%), Gaps = 0/41 (0%)
Strand=Plus/Plus
Query 57 TTTTTTATATTTAGAGCTCCTCTGTTTCTTCTCCAATAACC 97
||| |||||||||||||||||||||||||||||||||||||
Sbjct 42 TTTCTTATATTTAGAGCTCCTCTGTTTCTTCTCCAATAACC 82
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 45976237902
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5