BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT2G18170.1 Length=1695 Score E Sequences producing significant alignments: (Bits) Value Ahg319769 jgi|Araly1|319769|fgenesh1_pm.C_scaffold_3002785 1768 0.0 Ahg353194 jgi|Araly1|353194|fgenesh1_pg.C_scaffold_7000367 1092 0.0 Ahg942987 jgi|Araly1|942987|scaffold_603531.1 132 1e-29 > Ahg319769 jgi|Araly1|319769|fgenesh1_pm.C_scaffold_3002785 Length=1107 Score = 1768 bits (957), Expect = 0.0 Identities = 1058/1108 (95%), Gaps = 2/1108 (0%) Strand=Plus/Plus Query 215 ATGGCGATGTTAGTTGAGCCACCAAATGGGATTAAGCAACAAGGGAAACATTACTACTCC 274 ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 1 ATGGCGATGTTAGTTGAGCCACCAAATGGGATTAAACAACAAGGGAAACATTACTACTCA 60 Query 275 ATGTGGCAAACATTGTTCGAAATCGATACAAAGTATGTTCCGATTAAACCCATTGGAAGA 334 ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 61 ATGTGGCAAACATTGTTCGAAATCGATACTAAGTATGTTCCGATTAAACCCATTGGAAGA 120 Query 335 GGAGCTTATGGTGTGGTTTGTTCTTCTATCAATCGTGAGACTAATGAGAGAGTTGCTATT 394 |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 121 GGAGCTTATGGTGTGGTTTGTTCTTCAATCAATCGTGAGACTAATGAGAGAGTTGCTATT 180 Query 395 AAAAAGATTCACAATGTGTTTGAGAATCGTGTTGATGCTTTGAGAACGTTGAGGGAACTT 454 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 181 AAAAAGATTCACAATGTGTTTGAGAATCGTGTTGATGCTTTGAGAACGTTGAGGGAACTT 240 Query 455 AAACTTCTTAGGCATGTGAGGCATGAGAATGTGATCGCGCTTAAAGATGTTATGTTGCCT 514 || |||||||||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 241 AAGCTTCTTAGGCATGTGAGGCACGAGAATGTGATCGCGCTTAAAGATGTTATGTTGCCT 300 Query 515 GCTAATAGATCCAGTTTCAAGGATGTTTATTTGGTTTATGAGCTAATGGATACTGATCTT 574 ||||||||||||||||| || ||||||||||||||||||||||| ||||||||||||||| Sbjct 301 GCTAATAGATCCAGTTTTAAAGATGTTTATTTGGTTTATGAGCTCATGGATACTGATCTT 360 Query 575 CATCAGATTATTAAATCCTCTCAGTCTCTTTCTGATGATCACTGCAAGTACTTCTTGTTT 634 ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 361 CATCAGATTATTAAATCCTCTCAGTCTCTTTCTGATGATCACTGCAAATACTTCTTGTTT 420 Query 635 CAGTTGCTTAGAGGGTTGAAGTATCTTCATTCTGCAAACATACTTCACCGGGATTTGAAG 694 |||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||| Sbjct 421 CAGTTGCTTAGAGGATTGAAGTATCTTCATTCTGCAAACATCCTTCACCGGGATTTGAAG 480 Query 695 CCCGGGAACCTCTTAGTTAATGCGAACTGCGATCTCAAGATTTGTGATTTCGGGTTGGCG 754 ||||||||||||||||| || ||||| || |||||||||||||||||||| ||||||||| Sbjct 481 CCCGGGAACCTCTTAGTCAACGCGAATTGTGATCTCAAGATTTGTGATTTTGGGTTGGCG 540 Query 755 AGAACGAGCCAAGGTAATGAACAGTTCATGACTGAGTATGTGGTTACACGTTGGTACAGA 814 |||||||||||||| ||||||||||||||||| |||||||| ||||||||||||||| || Sbjct 541 AGAACGAGCCAAGGCAATGAACAGTTCATGACGGAGTATGTTGTTACACGTTGGTACCGA 600 Query 815 GCACCTGAGCTTCTTCTTTGTTGTGATAACTATGGAACCTCCATTGATGTATGGTCGGTT 874 |||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||| Sbjct 601 GCACCTGAGCTTCTTCTTTGTTGTGATAACTATGGAACCTCCATTGATGTTTGGTCAGTT 660 Query 875 GGTTGCATATTCGCGGAGATTCTTGGTAGGAAACCGATTTTTCCAGGAACAGAATGC-TT 933 || ||||||||||||||||||||||| |||||||||||||| ||||||||||||||| || Sbjct 661 GGATGCATATTCGCGGAGATTCTTGGCAGGAAACCGATTTTCCCAGGAACAGAATGCCTT 720 Query 934 GAATCAGCTTAAGCTAATCATCAACGTTGTTGGTAGCCAACAAGAATCTGATATTCGGTT 993 ||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||| Sbjct 721 -AATCAGCTTAAGCTAATCATCAATGTTGTTGGTAGCCAACAAGAATCGGATATTCGGTT 779 Query 994 CATAGACAACCCGAAAGCTCGAAGGTTTATAAAGTCTCTTCCGTACTCAAGAGGAACTCA 1053 |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 780 CATAGACAACCCGAAAGCTCGAAGGTTTATAAAGTCTCTTCCTTACTCAAGAGGAACTCA 839 Query 1054 TCTCTCCAATCTTTATCCACAAGCCAATCCTCTAGCTATAGATTTGTTACAGAGGATGCT 1113 |||||||||||| || |||||||||||||||||||||||||||||||||||||||||||| Sbjct 840 TCTCTCCAATCTCTACCCACAAGCCAATCCTCTAGCTATAGATTTGTTACAGAGGATGCT 899 Query 1114 TGTGTTTGATCCAACCAAGAGAATCTCTGTAACCGATGCGCTCTTACACCCGTATATGGC 1173 ||||| |||||||| || |||||||| ||||||||||| |||||||||||||| ||||| Sbjct 900 CGTGTTCGATCCAACGAAAAGAATCTCGGTAACCGATGCACTCTTACACCCGTACATGGC 959 Query 1174 GGGGTTGTTTGATCCTGGATCCAATCCGCCTGCACATGTCCCAATCTCTCTGGACATAGA 1233 |||| |||||||||||||||||||||| ||||||||||||||||||||| |||||||||| Sbjct 960 GGGGCTGTTTGATCCTGGATCCAATCCACCTGCACATGTCCCAATCTCTTTGGACATAGA 1019 Query 1234 TGAAAACATGGAGGAACCAGTGATAAGAGAGATGATGTGGAATGAGATGCTTTATTACCA 1293 |||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||| Sbjct 1020 CGAAAACATGGAGGAACCAATGATCAGAGAGATGATGTGGAATGAGATGCTTTATTACCA 1079 Query 1294 CCCTGAAGCTGAAATCTCAAATGCCTAA 1321 |||||||||||| ||| |||| ||||| Sbjct 1080 CCCTGAAGCTGATATCGCAAACACCTAA 1107 > Ahg353194 jgi|Araly1|353194|fgenesh1_pg.C_scaffold_7000367 Length=1092 Score = 1092 bits (591), Expect = 0.0 Identities = 939/1105 (85%), Gaps = 32/1105 (3%) Strand=Plus/Plus Query 215 ATGGCGATGTTAGTTGAGCCACCAAATGGGATTAAG-CAACAAGGGAAACATTACTACTC 273 ||||||||| ||||||| || |||||||||||| || ||| ||||||||||||||||| | Sbjct 1 ATGGCGATGCTAGTTGATCCTCCAAATGGGATT-AGACAAGAAGGGAAACATTACTACAC 59 Query 274 CATGTGGCAAACATTGTTCGAAATCGATACAAAGTATGTTCCGATTAAACCCATTGGAAG 333 |||||||||||||| ||||||||||| || ||||||||||||||||| || |||||||| Sbjct 60 GATGTGGCAAACATTATTCGAAATCGACACTAAGTATGTTCCGATTAAGCCGATTGGAAG 119 Query 334 AGGAGCTTATGGTGTGGTTTGTTCTTCTATCAATC-GTGAGACTAATGAGAGAGTTGCTA 392 ||||||||||||||| ||||||||||| ||||| | | ||||| |||||||||||||||| Sbjct 120 AGGAGCTTATGGTGTTGTTTGTTCTTCAATCAA-CAGAGAGACCAATGAGAGAGTTGCTA 178 Query 393 TTAAAAAGATTCACAATGTGTTTGAGAATCGTGTTGATGCTTTGAGAACGTTGAGGGAAC 452 |||| ||||| |||||||||||||||||||| | |||||||||||||||||||| || | Sbjct 179 TTAAGAAGATCCACAATGTGTTTGAGAATCGCATCGATGCTTTGAGAACGTTGAGAGAGC 238 Query 453 TTAAACTTCTT-AGGCATGTGAGGCATGAGAATGTGATCGCGCTTAAAGATGTTATGTTG 511 |||| ||| || ||||||||||| || || || || ||||| ||||| |||||||||||| Sbjct 239 TTAAGCTT-TTAAGGCATGTGAGACACGAAAACGTTATCGCCCTTAAGGATGTTATGTTG 297 Query 512 CCTGCTAATAGATCCAGTTTCAAGGATGTTTATTTGGTTTATGAGCTAATGGATACTGAT 571 ||| || |||| | ||||||||| |||||||||||||| |||||||| |||||| ||||| Sbjct 298 CCTACTCATAGGTACAGTTTCAAAGATGTTTATTTGGTCTATGAGCTTATGGATTCTGAT 357 Query 572 CTT-CATCAGATTATTAAATCCTCTCAGTCTCTTTCTGATGATCACTGCAAGTACTTCTT 630 || ||||||| || ||||| |||||||||||||| ||||||||||||||||||||||| Sbjct 358 -TTGAATCAGATCATCAAATCTTCTCAGTCTCTTTCCGATGATCACTGCAAGTACTTCTT 416 Query 631 GTTTCAGTTGCTTAGAGGGTTGAAGTATCTTCATTCTGCAAACATACTTCACCGGGATTT 690 |||||||||||| ||||| |||||||||||||| || |||||||| |||||||| ||||| Sbjct 417 GTTTCAGTTGCTAAGAGGATTGAAGTATCTTCACTCAGCAAACATCCTTCACCGCGATTT 476 Query 691 GAAGCCCGGGAA-CCTCTTAGTTAATGCGAACTGCGATCTCAAGATTTGTGATTTCGGG- 748 ||||||||||| | || |||| ||||| || || ||||| |||||||||||||||||| Sbjct 477 AAAGCCCGGGAATCTTC-TAGTGAATGCTAATTGTGATCTAAAGATTTGTGATTTCGGGC 535 Query 749 TTGGCGAGAACGAGCCA-AGGTAATGAACAGTTCATGACTGAGTATGTGGTTACACGTTG 807 || |||||||| || | ||| ||||||||||| ||||| ||||||||||| |||||||| Sbjct 536 TT-GCGAGAACAAG-TAGAGGCAATGAACAGTTTATGACAGAGTATGTGGTCACACGTTG 593 Query 808 GTACAGAGCACCTGAGCTTCTTCTTTGTTGTGATAACTATGGAACCTCCATTGATGTATG 867 |||| ||||||||||||||||||| |||||||| ||||| ||||||||||| ||||| || Sbjct 594 GTACCGAGCACCTGAGCTTCTTCTCTGTTGTGACAACTACGGAACCTCCATCGATGTTTG 653 Query 868 GTCGGTTGGTTGCATATTCGCGGAGATTCTTGGTAGGAAACCGATTTTTCCAGGAACAGA 927 |||||| || |||||||| || ||||||||||| || ||||||||||| || |||||||| Sbjct 654 GTCGGTAGGATGCATATTTGCAGAGATTCTTGGAAGAAAACCGATTTTCCCGGGAACAGA 713 Query 928 ATGCTTGAATCAGCTTAAGCTAATCATCAACGTTGTTGGTAGCCAACAAGAATCTGATAT 987 |||| | || || || ||||||||||| || |||||||||||||||||||| | ||| | Sbjct 714 ATGCCTCAACCAACTGAAGCTAATCATAAATGTTGTTGGTAGCCAACAAGACTGGGATCT 773 Query 988 TCGGTTCATAGACAACCCGAAAGCTCGAAGGTTTATAAAGTCTCTTCCGTACTC-AAGAG 1046 | ||||||||| |||| ||||||| | || ||||||||||||||||| | ||| ||| | Sbjct 774 CCAGTTCATAGATAACCAGAAAGCTAGGAGATTTATAAAGTCTCTTCCTTTCTCAAAG-G 832 Query 1047 GAACTCATC-TCTC-CAATCTTTATCCACAAGCCAATCCTCTAGCTATAGATTTGTTACA 1104 | ||||| | | || | | |||| || || || |||||||| || |||||||||||||| Sbjct 833 GCACTCA-CTTTTCTC-AGATTTACCCGCATGCGAATCCTCTGGCGATAGATTTGTTACA 890 Query 1105 GAGGATGCTTGTGTTTGATCCAACCAAGAGAATCTCTGTAACCGATGCGCTCTTACA-CC 1163 |||||||||||||||||||||||||||||| || || || | ||||||||| ||||| || Sbjct 891 GAGGATGCTTGTGTTTGATCCAACCAAGAGGATATCGGTCAGCGATGCGCTTTTACATCC 950 Query 1164 CGTATATGGCGGGGTTGTTTGATCCTGGA-TCCAATCCGCCTGCACATGTCCCAATCTCT 1222 | || |||||||| ||||| || || ||| | |||||| | | | |||| || || | Sbjct 951 C-TACATGGCGGGTTTGTTGGAACC-GGAATGTAATCCGTCAGAAAATGTTCCGGTCAGT 1008 Query 1223 CTGGACATAGATGAAAACATGGA-GGA-ACCAGTGATAAGAGAGATGATGTGG-AATGAG 1279 |||| |||||||| || ||||| ||| || | |||| || |||||||||||| || ||| Sbjct 1009 TTGGAGATAGATGAGAATATGGAAGGAGAC-A-TGATCAGGGAGATGATGTGGGAA-GAG 1065 Query 1280 ATGCTTTATTACCA-CCCTGAAGCT 1303 ||||||||||||| ||| |||||| Sbjct 1066 ATGCTTTATTACCTTCCC-GAAGCT 1089 > Ahg942987 jgi|Araly1|942987|scaffold_603531.1 Length=1173 Score = 132 bits (71), Expect = 1e-29 Identities = 324/439 (74%), Gaps = 45/439 (10%) Strand=Plus/Plus Query 536 GATGTTTATTTGGTTTATGAGCTAATGGATACTGATCTTCATCAGATTATTAAATCCT-C 594 ||||||||| | |||| |||| ||||||||||||||||||||||||||||| ||| | Sbjct 377 GATGTTTATATAGTTTTTGAGTTAATGGATACTGATCTTCATCAGATTATTCGATCAGAC 436 Query 595 TCAGTCTCTTTC--TGATGATCACTG-CAAGTACTTCTTGTTTCAG-TTGCTTA-GAGGG 649 || | |||| ||||||||| || || ||||||||||| |||| || || | |||| Sbjct 437 -CAA-C-CTTTGAATGATGATCATTGTCA-GTACTTCTTGTATCAGATT-CT-ACGAGGA 490 Query 650 TTGAAGTATCTTCATTCTGCAAACATACTT-CACCGGGAT-TTGAAGCCCGGG-AACCT- 705 | || ||| ||||||| ||||| | ||| || || || || ||||| | | || | Sbjct 491 ATAAAATATATTCATTCAGCAAATGT-CTTACATCGTGACCTT-AAGCC-GAGTAATTTG 547 Query 706 CTTAGTTAATGCGAACTGCGATCTCAAGATTT-GTGA-TTTCGGGTTGGCGAGAACGAGC 763 ||| | ||| |||| || ||||| |||||| | || ||| || ||||| || |||| | Sbjct 548 CTTC-TGAATTCGAATTGTGATCTTAAGATTACG-GACTTT-GGTTTGGCAAGGACGA-C 603 Query 764 CAAGGTAATGAA-CAG--TTCATGACTGAGTATGTGGTTACACGTTGGTACAGAGCACCT 820 | | |||| ||| || ||||| |||||||| || || || |||||| ||||||| Sbjct 604 -A---TC-TGAAACAGAGTTTATGACAGAGTATGTTGTAACTCGATGGTACCGAGCACCA 658 Query 821 GAGCTTCTTCTTTGTTGTG-ATAACTATGGAACCTCCA-TTGATGTATGGTCGGTTGGTT 878 ||||| |||||| | || | | ||| | | | || ||||||| ||||| ||||||| Sbjct 659 GAGCTGCTTCTTAATAGTTCAGAG-TATACATC-TGCAATTGATGTTTGGTCTGTTGGTT 716 Query 879 GCATATTCGCGGAGATTCTTGGTA-GGAAACCGATTTTTCCAGG-AACAGA--ATGCTTG 934 ||||||| || |||||| | | | || ||||| |||| || || || ||| ||| || Sbjct 717 GCATATTTGCTGAGATTAT-GACAAGGGAACCGCTTTTCCCGGGGAA-AGACTATG-TTC 773 Query 935 AATCAGCTTAAGCTAATCA 953 | ||||||||| || |||| Sbjct 774 A-TCAGCTTAAACTTATCA 791 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 63572618905 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5