BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G18230.1
Length=1004
Score E
Sequences producing significant alignments: (Bits) Value
Ahg480728 jgi|Araly1|480728|fgenesh2_kg.3__3429__AT2G18230.1 1301 0.0
> Ahg480728 jgi|Araly1|480728|fgenesh2_kg.3__3429__AT2G18230.1
Length=950
Score = 1301 bits (704), Expect = 0.0
Identities = 770/800 (96%), Gaps = 11/800 (1%)
Strand=Plus/Plus
Query 4 ACTCTACTGTAACTGCAAAATC--TTGTTGTTTTC-TTAAACgaagagagaagaaagaaa 60
|||||||||||||||||||||| ||||||||||| ||||||||||||||||| ||| ||
Sbjct 1 ACTCTACTGTAACTGCAAAATCTTTTGTTGTTTTCTTTAAACGAAGAGAGAAG-AAG-AA 58
Query 61 gaaaaaaaCGTTACGGATTCTCTGCTTCGGTTTCGCGATTGAAGCTTGAGATTTCATCT- 119
|||||| ||||||||||||||| |||||||||||| |||||||||||| |||||||||
Sbjct 59 -AAAAAAGCGTTACGGATTCTCTTCTTCGGTTTCGCCATTGAAGCTTGAAATTTCATCTG 117
Query 120 T--GAACATCCGATATGGCTGA-AATCAAGGATGAAGGAAGCGCCAAGGGCTATGCTTTC 176
| |||||| |||||||||||| || || |||||||||| |||||||||||||||||||
Sbjct 118 TAAGAACATTCGATATGGCTGAGAA-AAACGATGAAGGAAACGCCAAGGGCTATGCTTTC 176
Query 177 CCTCTCAGGAACCCTAATGTTACGCTGAATGAGAGAAACTTTGCAGCCTTCACTCACAGA 236
||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||
Sbjct 177 CCTCTCAGGAACCCTAATGTTACTCTGAACGAGAGAAACTTTGCAGCCTTCACTCACAGA 236
Query 237 TCAGCTGCTGCTCATCCTTGGCATGACTTGGAGATTGGTCCAGAAGCTCCTACTGTTTTC 296
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 237 TCAGCTGCTGCTCATCCTTGGCATGACTTGGAGATTGGTCCAGAAGCTCCTGCTGTTTTC 296
Query 297 AACTGTGTTGTTGAAATTAGCAAAGGTGGAAAGGTTAAGTACGAGCTAGACAAGAACAGT 356
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 297 AACTGTGTTGTTGAAATTAGCAAAGGTGGAAAGGTTAAGTACGAGCTAGACAAGAACAGT 356
Query 357 GGCCTTATTAAGGTTGATCGCGTTCTCTACTCATCCATTGTGTACCCCCACAACTACGGT 416
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 357 GGCCTTATTAAGGTTGATCGCGTTCTCTACTCATCCATTGTGTACCCACACAACTACGGT 416
Query 417 TTCATCCCTCGAACTATCTGTGAAGACAGTGATCCAATGGATGTCCTGGTACTGATGCAG 476
||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 417 TTCATTCCTCGAACTATCTGTGAAGACAGTGATCCAATCGATGTCCTGGTACTGATGCAG 476
Query 477 GAGCCTGTGCTAACCGGATCATTCCTCCGTGCCCGTGCTATTGGTCTAATGCCCATGATT 536
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 477 GAGCCTGTGCTAACCGGATCATTCCTCCGTGCCCGTGCTATTGGTCTGATGCCCATGATT 536
Query 537 GATCAGGGTGAGAAAGACGACAAGATCATTGCAGTATGTGCTGATGATCCCGAGTTCCGT 596
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 537 GATCAGGGTGAAAAAGACGACAAGATCATTGCAGTATGTGCTGATGATCCCGAGTTCCGT 596
Query 597 CACTACAGAGACATCAAAGAGCTTCCCCCTCACCGTCTAGCTGAAATCCGTCGCTTCTTT 656
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 597 CACTACAGAGACATCAAAGAGCTTCCCCCTCACCGTCTAGCTGAAATCCGTCGCTTCTTT 656
Query 657 GAGGACTACAAGAAGAACGAGAACAAGAAAGTCGACGTTGAAGCTTTCCTTCCCGCTCAA 716
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 657 GAGGACTACAAGAAGAACGAGAACAAGAAAGTCGACGTTGAAGGTTTCCTTCCCGCTCAA 716
Query 717 GCTGCCATAGACGCTATCAAGGACTCCATGGATCTTTACGCAGCTTACATCAAAGCTGGC 776
|||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||
Sbjct 717 GCTGCCATAGACGCAATTAAGGACTCCATGGATCTTTACGCAGCTTACATCAAAGCTGGC 776
Query 777 CTGCAACGCTAATGAAGAAA 796
||||||||||||||||||||
Sbjct 777 CTGCAACGCTAATGAAGAAA 796
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 37322335743
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5