BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G18300.3
Length=1492
Score E
Sequences producing significant alignments: (Bits) Value
Ahg480739 jgi|Araly1|480739|fgenesh2_kg.3__3440__AT2G18300.2 1755 0.0
Ahg888409 jgi|Araly1|888409|Al_scaffold_0007_395 285 6e-76
> Ahg480739 jgi|Araly1|480739|fgenesh2_kg.3__3440__AT2G18300.2
Length=1465
Score = 1755 bits (950), Expect = 0.0
Identities = 1042/1086 (96%), Gaps = 7/1086 (1%)
Strand=Plus/Plus
Query 210 attttttcccattctctattttgttttgtacttttgGTCTCACTTTAAAAGATCATAAGT 269
||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||
Sbjct 18 ATTTTTTCCCATTCTCTATTTTG-TTTGTACTTTTGGTCTCACTTTAAAAGATC--AAGT 74
Query 270 TGAAAGATTTCTGCAGAGAACAATATGTTGGAAGGTCTTGTCTCTCAAGAAAGCTTGTCC 329
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 75 TGAAAGATTTCTGCAGAGAACAATATGTTGGAAGGTCTTGTCTCACAAGAAAGCTTGTCC 134
Query 330 TTAAACTCTATGGACATGTCTGTACTTGAAAGGCTTAAATGGGTACAACAGCAACAACAG 389
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||
Sbjct 135 TTAAACTCTATGGACATGTCTGTACTTGAAAGGCTTAAATGGGTGCAACAGCAACAGCAG 194
Query 390 CAACTGCAACAAGTTGTGTCCCATAGCAGTAATAATTCACCTGAACTTCTTCAGATACTT 449
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 195 CAACTGCAACAAGTTGTGTCCCAGAGCAGTAATAATTCACCTGAACTTCTTCAGATACTA 254
Query 450 CAGTTCCATGGAAGCAACAATGATGAGTTGTTGGAGAGTAGTTTCAGCCAATTTCAAATG 509
||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||
Sbjct 255 CAGTTCCATGGAAGCAACAATGATGAGTTGTTGCAGAGTAGTTTCAGCCCATTTCAAATG 314
Query 510 CTTGGATCTGGTTTTGGACCAAACTATAACATGGGTTTTGGTCCTCCACATGAATCCATT 569
|||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||
Sbjct 315 CTTGGATCTGGTTTTGGACCAAACTATAACATTGGTTTTGGTCCTCCACATGAAGCCATT 374
Query 570 TCAAGAACAAGTAGCTGCCATATGGAACCTGTGGATACAATGGAGGTTTTGTTGAAGACC 629
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 375 TCAAGAACAAGTAGCTGCCATATGGAACCAGTGGATACAATGGAGGTTTTGTTGAAGACT 434
Query 630 GGTGAAGAAACCAGAGCCGTTGCCTTgaagaacaagagaaaaccagaggttaagacaagg 689
|||||||||| ||||||| |||||||||| ||||||||||||||||||||||||| ||||
Sbjct 435 GGTGAAGAAAACAGAGCCATTGCCTTGAAAAACAAGAGAAAACCAGAGGTTAAGAAAAGG 494
Query 690 gaagagcaaaagacagagaagaagatcaaagTAGAGGCTGAGACAGAGTCAAGCATGAAA 749
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 495 GAAGAGGAAAAGACAGAGAAGAAGATCAAAGTAGAGGCTGAGACAGAGTCAAGCATGAAA 554
Query 750 GGAAAATCAAACATGGGAAACACTGAAGCATCTTCAGACACTTCAAAGGAGACATCGAAA 809
||||||||||||||| ||||||||||||||||||| |||||||||||||||||||| |||
Sbjct 555 GGAAAATCAAACATGAGAAACACTGAAGCATCTTCCGACACTTCAAAGGAGACATC-AAA 613
Query 810 G-GAGCTTCAGAGAATCAGAAATTAGATTATATCCACGTGAGAGCTCGTCGAGGCCAAGC 868
| ||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 614 GAAAGCTTCAGAGATTCAAAAATTAGATTATATCCACGTGAGAGCTCGTCGAGGCCAAGC 673
Query 869 CACTGACAGACACAGCTTAGCAGAAAGGGCGAGAAGAGAAAAGATCAGCAAGAAAATGAA 928
|||||| |||||||||||||| |||||||||||||||||||||||||||||||| |||||
Sbjct 674 CACTGATAGACACAGCTTAGCTGAAAGGGCGAGAAGAGAAAAGATCAGCAAGAAGATGAA 733
Query 929 ATATCTGCAAGATATTGTGCCTGGATGCAATAAGGTCACAGGAAAAGCTGGTATGCTTGA 988
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 734 ATATCTGCAAGATATTGTGCCTGGATGCAACAAGGTCACAGGAAAAGCTGGTATGCTTGA 793
Query 989 TGAGATCATCAATTATGTTCAATGTCTCCAAAGACAAGTCGAGTTCCTGTCGATGAAACT 1048
|||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||
Sbjct 794 TGAGATCATCAATTATGTTCAATGTCTCCAAAGACAAGTCGAATTCTTGTCGATGAAACT 853
Query 1049 TGCTGTCTTGAACCCGGAACTAGAGCTTGCCGTGGAAGATGTATCCGTAAAACAGTTTCA 1108
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 854 CGCTGTCTTGAACCCGGAACTAGAGCTTGCCGTGGAAGATGTATCTGTAAAACAGTTTCA 913
Query 1109 GGCTTACTTTACAAATG-TAGTTGCTTCAAAGCAATCAATAATGGTTGATGTGCCATTGT 1167
||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||
Sbjct 914 GGCTTACTTTACAAATGTTA-CTGCTTCAAAGCAATCAATAATGGTTGATGTGCCATTGT 972
Query 1168 TTCCGTTAGACCAGCAAGGATCTCTAGATTTGTCTGCGATAAACCCGAACCAAACGACAT 1227
||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||
Sbjct 973 TTCCGTTAGACCAGCAAGGATCTCTAGATTTGTCTGCCATAAACCCGAATCAAACGACAT 1032
Query 1228 CTATCGAAGCTCCATCTGGAAGCTGGGAAACTCAATCACAGAGTCTCTACAACACATCTA 1287
|||| ||||||||||||| ||||||||||| ||| ||||| |||||||||||||||||||
Sbjct 1033 CTATTGAAGCTCCATCTGCAAGCTGGGAAATTCAGTCACAAAGTCTCTACAACACATCTA 1092
Query 1288 GCCTCG 1293
||||||
Sbjct 1093 GCCTCG 1098
> Ahg888409 jgi|Araly1|888409|Al_scaffold_0007_395
Length=915
Score = 285 bits (154), Expect = 6e-76
Identities = 380/481 (79%), Gaps = 47/481 (10%)
Strand=Plus/Plus
Query 641 CAGAGCCGTTGCCTTgaagaacaagagaaaaccagaggttaagacaagggaagagcaaaa 700
||||||| |||||||| | ||||||||||||||||||| |||||| | ||| || | |
Sbjct 255 CAGAGCCATTGCCTTGCATAACAAGAGAAAACCAGAGGGTAAGAC-A--GAAAAG--AGA 309
Query 701 gacagagaagaagatcaaagTAGAGGCTGAGACAGAGTCAAGCATGAAAGGAAAATCAAA 760
|| | ||||||||||||||| ||||| ||| |||||||||||||||||||| || |||
Sbjct 310 GAGA-AGAAGAAGATCAAAGCAGAGGATGAAACAGAGTCAAGCATGAAAGG--AA--AAA 364
Query 761 CATGGGAAACACTGAAGCATCTTCAGACACTTCAAAGGAGACATCGAAAGGAGCTTCAGA 820
| ||||| || || || ||| | | ||||||| |||||||
Sbjct 365 C-----AAACA-TG-AG------CA-ACA---C--A-GAGACAT---------CTTCAGA 395
Query 821 GAATCAGAAATTAGATTATATCCACGTGAGAGCTCGTCGAGGCCAAGCCACTGACAGACA 880
|| ||||||| |||||| ||||| || |||||| | || || |||| || ||||||||
Sbjct 396 GATTCAGAAACCAGATTACATCCATGTCAGAGCTAGACGTGGTGAAGCTACCGACAGACA 455
Query 881 CAGCTTAGCAGAAAGGGCGAGAAGAGAAAAGATCAGCAAGAAAATGAAATATCTGCAAGA 940
||||||||||| ||||| || ||||||||||| |||||||| ||||||| ||| |||||
Sbjct 456 TAGCTTAGCAGAGAGGGCAAGGAGAGAAAAGATAAGCAAGAAGATGAAATGTCTTCAAGA 515
Query 941 TATTGTGCCTGGATGCAATAAGGTCACAGGAAAAGCTGGTATGCTTGATGAGATCATCAA 1000
|||||| ||||||||||| || || || || |||||||||||||||||||||||||||||
Sbjct 516 TATTGTTCCTGGATGCAACAAAGTAACTGGGAAAGCTGGTATGCTTGATGAGATCATCAA 575
Query 1001 TTATGTTCAATGTCTCCAA-AGACAAGTCGAGTTCCTGTCGATGAAACT-TGCTGTCTTG 1058
||||| |||| ||| ||| | ||||||||||||| | ||||||||||| | ||||| |
Sbjct 576 CTATGTCCAATCTCTGCAACA-ACAAGTCGAGTTCTTATCGATGAAACTCT-CTGTCATA 633
Query 1059 AACCCGGAACTAGAGCTTGCCGTG--GAAGATGTATCCGTAAAACAGTTTCAGGCTTACT 1116
|| || ||||| ||| | | | | || ||| |||||| ||||||||||||||||||||
Sbjct 634 AATCCAGAACTTGAG-T-GTCATATCGATGATTTATCCGCAAAACAGTTTCAGGCTTACT 691
Query 1117 T 1117
|
Sbjct 692 T 692
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 55840299170
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5