BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT2G18328.1 Length=517 Score E Sequences producing significant alignments: (Bits) Value Ahg480741 jgi|Araly1|480741|fgenesh2_kg.3__3442__AT2G18328.1 604 1e-172 > Ahg480741 jgi|Araly1|480741|fgenesh2_kg.3__3442__AT2G18328.1 Length=402 Score = 604 bits (327), Expect = 1e-172 Identities = 378/402 (94%), Gaps = 5/402 (1%) Strand=Plus/Plus Query 1 AAACCAATTCAAGTCATCTCTATCCGTCAACAATACAAACCAACCTTCTCAATTCCTCTC 60 |||||||||||| |||||||||| ||||| |||||||||||||||||||||||||||| | Sbjct 1 AAACCAATTCAAATCATCTCTATTCGTCATCAATACAAACCAACCTTCTCAATTCCTCAC 60 Query 61 TTTTCATCCACATTTTCACTAGCTAATGGCTTCTAGTTCAATGAGCACCTCATCATGGAC 120 |||| ||||||||||| | | ||||||||||| |||||||| |||| |||||||||||| Sbjct 61 TTTTGATCCACATTTT--C-A-CTAATGGCTTCCAGTTCAATCAGCAACTCATCATGGAC 116 Query 121 AGCTAGAGAGGACAAGCAATTCGAAATGGCGTTGGCGAAATTCGACAAGGACACTCCTGA 180 ||| | |||||||||||||||||||||||||||||| |||| |||||||||||||||||| Sbjct 117 AGCGAAAGAGGACAAGCAATTCGAAATGGCGTTGGCAAAATACGACAAGGACACTCCTGA 176 Query 181 CCGTTGGCAAAAAATTGCAAGGGCAGTTGGTGGGAAATCAACTGAAGAAGTAAAGCGACA 240 ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 177 CCGTTGGCAAAAAATTGCAAGGGCAGTTGCTGGGAAATCAACTGAAGAAGTAAAGCGACA 236 Query 241 CTATGAATTGCTCCTTAGGGATGTGAATGACATTGAGTCAGGACGCTATCCACAACCTAG 300 ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 237 CTATGAATTGCTCATTAGGGATGTGAATGACATTGAGTCAGGACGCTATCCACAACCTAG 296 Query 301 GTACCGTAACACTAATTGAAGCCATTAATAAAATGCCTTTCTATCAAGAAGAGGACATTT 360 |||||||||||||||||||||||||||||||||||| ||| ||||||||||| ||||||| Sbjct 297 GTACCGTAACACTAATTGAAGCCATTAATAAAATGCTTTTATATCAAGAAGATGACATTT 356 Query 361 GAGAGAATCTATAAAGAACTAAGAATTTCGATGTATTTCTTA 402 ||||||| ||||||||||||||||||| ||||||||| |||| Sbjct 357 GAGAGAACCTATAAAGAACTAAGAATT-CGATGTATTGCTTA 397 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 18810705377 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5