BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT2G18328.1

Length=517
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg480741 jgi|Araly1|480741|fgenesh2_kg.3__3442__AT2G18328.1         604    1e-172


> Ahg480741 jgi|Araly1|480741|fgenesh2_kg.3__3442__AT2G18328.1
Length=402

 Score =  604 bits (327),  Expect = 1e-172
 Identities = 378/402 (94%), Gaps = 5/402 (1%)
 Strand=Plus/Plus

Query  1    AAACCAATTCAAGTCATCTCTATCCGTCAACAATACAAACCAACCTTCTCAATTCCTCTC  60
            |||||||||||| |||||||||| ||||| |||||||||||||||||||||||||||| |
Sbjct  1    AAACCAATTCAAATCATCTCTATTCGTCATCAATACAAACCAACCTTCTCAATTCCTCAC  60

Query  61   TTTTCATCCACATTTTCACTAGCTAATGGCTTCTAGTTCAATGAGCACCTCATCATGGAC  120
            |||| |||||||||||  | | ||||||||||| |||||||| |||| ||||||||||||
Sbjct  61   TTTTGATCCACATTTT--C-A-CTAATGGCTTCCAGTTCAATCAGCAACTCATCATGGAC  116

Query  121  AGCTAGAGAGGACAAGCAATTCGAAATGGCGTTGGCGAAATTCGACAAGGACACTCCTGA  180
            ||| | |||||||||||||||||||||||||||||| |||| ||||||||||||||||||
Sbjct  117  AGCGAAAGAGGACAAGCAATTCGAAATGGCGTTGGCAAAATACGACAAGGACACTCCTGA  176

Query  181  CCGTTGGCAAAAAATTGCAAGGGCAGTTGGTGGGAAATCAACTGAAGAAGTAAAGCGACA  240
            ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct  177  CCGTTGGCAAAAAATTGCAAGGGCAGTTGCTGGGAAATCAACTGAAGAAGTAAAGCGACA  236

Query  241  CTATGAATTGCTCCTTAGGGATGTGAATGACATTGAGTCAGGACGCTATCCACAACCTAG  300
            ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  237  CTATGAATTGCTCATTAGGGATGTGAATGACATTGAGTCAGGACGCTATCCACAACCTAG  296

Query  301  GTACCGTAACACTAATTGAAGCCATTAATAAAATGCCTTTCTATCAAGAAGAGGACATTT  360
            |||||||||||||||||||||||||||||||||||| ||| ||||||||||| |||||||
Sbjct  297  GTACCGTAACACTAATTGAAGCCATTAATAAAATGCTTTTATATCAAGAAGATGACATTT  356

Query  361  GAGAGAATCTATAAAGAACTAAGAATTTCGATGTATTTCTTA  402
            ||||||| ||||||||||||||||||| ||||||||| ||||
Sbjct  357  GAGAGAACCTATAAAGAACTAAGAATT-CGATGTATTGCTTA  397



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 18810705377


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5