BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT2G18350.1 Length=1065 Score E Sequences producing significant alignments: (Bits) Value Ahg931728 jgi|Araly1|931728|scaffold_304185.1 1227 0.0 > Ahg931728 jgi|Araly1|931728|scaffold_304185.1 Length=826 Score = 1227 bits (664), Expect = 0.0 Identities = 777/831 (94%), Gaps = 9/831 (1%) Strand=Plus/Plus Query 152 AAGCTTCaagatcagaa-aagatggaagttagagagaagaaagatgagaaaatggagatg 210 ||||||||||||||||| || |||||||||||||||||||||||||||||||||||||| Sbjct 1 AAGCTTCAAGATCAGAAGAA-ATGGAAGTTAGAGAGAAGAAAGATGAGAAAATGGAGATA 59 Query 211 acaagaagaaaaTCATCAGCTCTAGATCATCATCGTCTTCCTCCGTACACTTACTCC-CA 269 ||||||||| |||||||||||||||| |||| || ||||||||||||||||||| || || Sbjct 60 ACAAGAAGACAATCATCAGCTCTAGACCATCGTCTTCTTCCTCCGTACACTTAC-CCTCA 118 Query 270 AACCGCCAACAAAGAGAAACCCACCACCAAAAGAAACGGGTCGGACCCGGATCCGGATCC 329 ||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 119 AACCGCCGACAAAGAGAAACCCACCACCAAAAGAAACGGGTCGGAACCGGATCCGGATCC 178 Query 330 GGATCTTGATACTAACCCAATTTCTATATCTCATGCTCCAAGATCATACGCTAGGCCTCA 389 |||||||||||| ||||||||||||||| ||| ||||||||||||||||| ||||||||| Sbjct 179 GGATCTTGATACCAACCCAATTTCTATAGCTCCTGCTCCAAGATCATACGTTAGGCCTCA 238 Query 390 AACTACTTCTCCGGGGAAGGCAAGGTATAGAGAATGCCAAAAGAATCACGCGGCGAGCTC 449 ||||||||||||||||||||| ||||||||||||||||||||||| |||| ||||||||| Sbjct 239 AACTACTTCTCCGGGGAAGGCGAGGTATAGAGAATGCCAAAAGAACCACGTGGCGAGCTC 298 Query 450 CGGTGGACACGTTGTCGACGGTTGCGGCGAGTTTATGTCTTCCGGGGAAGAAGGCACGGT 509 |||||| ||||| || ||||||||||||||||||||| ||||||| ||||| || |||| Sbjct 299 CGGTGGCCACGTGGTAGACGGTTGCGGCGAGTTTATGCCTTCCGGTGAAGAGGGTACGGC 358 Query 510 GGAGTCTCTTCTTTGTGCAGCTTGTGATTGCCACCGGAGCTTCCATAGAAAAGAGATCGA 569 |||||||||| ||||||||||||||||||| ||||||||||||||||| ||||||||||| Sbjct 359 GGAGTCTCTTATTTGTGCAGCTTGTGATTGTCACCGGAGCTTCCATAGGAAAGAGATCGA 418 Query 570 TGGTTTGTTTGTTGTCAATTTCAATAGCTTTGGCCATTCACAGAGACCACTCGGAAGCCG 629 ||||||||||||||||||||||||||||||||||||||| ||||| ||||||| ||||| Sbjct 419 TGGTTTGTTTGTTGTCAATTTCAATAGCTTTGGCCATTCTCAGAGGCCACTCGTTAGCCG 478 Query 630 CCACGTGTCTCCGATAATGATGAGTTTTGGTGGTGGTGGTGGTTGTGCGGCGGAGTCATC 689 |||||||||||||||||||||||| || ||||| |||||| | |||||||||||||||| Sbjct 479 CCACGTGTCTCCGATAATGATGAGCTTCGGTGGCGGTGGT-G--GTGCGGCGGAGTCATC 535 Query 690 GACGGAGGATCTAAACAAGTTTCATCAATCTTTTAGTGGTTATGGAGTGGATCAGTTTCA 749 |||||||||||||||||| ||||||||||||||||||||| ||||||||||||| ||||| Sbjct 536 GACGGAGGATCTAAACAAATTTCATCAATCTTTTAGTGGTAATGGAGTGGATCAATTTCA 595 Query 750 TCATTATCAACCCAAGAAACGGTTTAGGACAAAGTTTAATGAAGAACAGAAGGAGAAGAT 809 ||| ||||| |||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 596 TCAGTATCAGCCCAAGAAACGGTTTAGGACAAAGTTCAATGAAGAACAGAAGGAGAAGAT 655 Query 810 GATGGAGTTTGCTGAGAAGATTGGTTGGAGAATGACAAAACTAGAAGATGATGAAGTGAA 869 ||||||||||||||||||||||||||||||||| || |||| |||||| ||||||||||| Sbjct 656 GATGGAGTTTGCTGAGAAGATTGGTTGGAGAATAACTAAACAAGAAGACGATGAAGTGAA 715 Query 870 TCGGTTTTGTCGTGAGATTAAAGTTAAAAGACAAGTGTTTAAAGTTTGGATGCACAACAA 929 ||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||| Sbjct 716 TCGGTTTTGTCGTGAGATTAATGTGAAAAGACAAGTGTTTAAAGTTTGGATGCACAACAA 775 Query 930 TAAACAAGCAGCAAAGAAGAAGGATTTGTAAGAGATTTCtatatata-tat 979 ||||||||||||||||||||||||||||||||||| | ||||||||| ||| Sbjct 776 TAAACAAGCAGCAAAGAAGAAGGATTTGTAAGAGACT-CTATATATACTAT 825 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 39647833680 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5