BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT2G18480.1 Length=1798 Score E Sequences producing significant alignments: (Bits) Value Ahg906700 jgi|Araly1|906700|Al_scaffold_0003_3828 2381 0.0 > Ahg906700 jgi|Araly1|906700|Al_scaffold_0003_3828 Length=1515 Score = 2381 bits (1289), Expect = 0.0 Identities = 1434/1504 (95%), Gaps = 10/1504 (1%) Strand=Plus/Plus Query 13 ATGGTTCATGCTGATGGTCATAATTTTCCCGGTTCGGATCCAAA--CC-CTCATATGAAC 69 |||||||||||||||| ||||||||||||||| ||||||| ||| || ||||||||||| Sbjct 1 ATGGTTCATGCTGATGCTCATAATTTTCCCGGGTCGGATCAAAACCCCACTCATATGAAC 60 Query 70 AAGTTCGCTTTCGGGTGTGCCATTGTTGCTTCCATCATTTCTATCATCTTTGGATATGAT 129 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 61 AAGTTCGCTTGCGGGTGTGCCATTGTTGCTTCCATCATTTCTATCATCTTTGGATATGAT 120 Query 130 ACGGGAGTTATGAGCGGAGCTCAGATATTTATAAGAGATGATCTAAAAATAAACGACACT 189 |||||||||||||||||||||||||||||||||||||| |||||||| || |||||||| Sbjct 121 ACGGGAGTTATGAGCGGAGCTCAGATATTTATAAGAGAGGATCTAAATTTAGACGACACT 180 Query 190 CAGATTGAAGTTTTGGCCGGAATCTTGAATCTTTGTGCACTCGTCGGATCACTAACGGCG 249 ||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 181 CAGATCGAAGTTTTGGCCGGAATCTTGAATCTTTGTGCCCTCGTCGGATCACTAACGGCG 240 Query 250 GGGAAAACGTCTGACGTCATCGGCCGACGTTACACCATAGCTCTCTCCGCCGTGATATTC 309 || ||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 241 GGAAAAACTTCTGACGTCATCGGCCGACGTTACACCATTGCTCTCTCCGCCGTGATATTC 300 Query 310 TTAGTGGGCTCAGTTCTTATGGGTTACGGCCCAAACTATC-CTGTTTTGATGGTCGGACG 368 |||||||| ||||||||||||||||||||||||||||| | | ||||||||||||||| | Sbjct 301 TTAGTGGGTTCAGTTCTTATGGGTTACGGCCCAAACTA-CGCCGTTTTGATGGTCGGAAG 359 Query 369 ATGTATTGCCGGAGTTGGTGTAGGGTTTGCTCTCATGATAGCTCCGGTTTACTCTGCCGA 428 |||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 360 ATGTATCGCCGGGGTTGGTGTAGGGTTTGCTCTCATGATAGCTCCGGTTTACTCTGCCGA 419 Query 429 GATATCCTCTGCGTCACATAGAGGCTTTCTCACTTCTCTACCTGAGCTTTGTATTAGTCT 488 |||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 420 GATATCCTCTGCTTCACACAGAGGCTTTCTCACTTCTCTACCTGAGCTTTGTATTAGTCT 479 Query 489 TGGGATTTTACTAGGCTATGTCTCGAATTACTGTTTTGGGAAACTGACGTTGAAACTTGG 548 |||||||||||| || ||||||||||||||||||||||||||| |||||||||| ||||| Sbjct 480 TGGGATTTTACTTGGTTATGTCTCGAATTACTGTTTTGGGAAATTGACGTTGAAGCTTGG 539 Query 549 ATGGAGATTGATGCTTGGAATCGCAGCGTTCCCGTCTTTGATATTGGCTTTTGGGATTAC 608 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 540 ATGGAGATTGATGCTTGGAATCGCAGCGTTCCCGTCTTTGATATTGGCTTTTGGGATTAC 599 Query 609 AAGAATGCCCGAGTCGCCGAGGTGGCTTGTGATGCAAGGTAGGTTAGAAGAAGCCAAGAA 668 ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 600 AAGAATGCCTGAGTCGCCGAGGTGGCTTGTGATGCAAGGTAGGTTAGAAGAAGCCAAGAA 659 Query 669 AATAATGGTTTTGGTATCCAATACGGAAGAAGAAGCTGAAGAACGGTTCAGAGACATCTT 728 ||||||||||||||||||||| || ||||||||||| ||||||||||||||||||||||| Sbjct 660 AATAATGGTTTTGGTATCCAACACAGAAGAAGAAGCCGAAGAACGGTTCAGAGACATCTT 719 Query 729 AACCGCTGCGGAAGTAGATGTGACAGAGATAAAAGAAGTTG-GTGGCGGCGTTAAGAAGA 787 ||||||||||||| |||||| || ||||||||||| || || |||||| |||| |||| Sbjct 720 AACCGCTGCGGAAATAGATGAGATAGAGATAAAAGCAG-TGAGTGGCGCCGTT---AAGA 775 Query 788 AGAATCACGGTAAAAGTGTTTGGAGGGAGTTGGTGATAAAACCGCGACCTGCGGTGCGTT 847 ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 776 AGAATCAAGGTAAAAGTGTTTGGAGGGAGTTGGTGATAAAACCGCGACCTGCGGTGCGTT 835 Query 848 TGATCTTGATAGCGGCCGTTGGGATACACTTTTTCGAGCATGCGACGGGGATTGAGGCCG 907 ||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 836 TGATCCTGATAGCGGCCGTTGGGATACACTTTTTCGAGCATGCGACGGGGATTGAAGCCG 895 Query 908 TCGTGTTGTACAGCCCGAGAATTTTCAAGAAAGCCGGAGTTGTTTCGAAAGACAAGCTCT 967 |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct 896 TCGTGTTGTACAGCCCGAGAATTTTCAAGAAAGCCGGAGTAGTTTCGAAAGACAAGCTCT 955 Query 968 TACTAGCCACGGTCGGTGTAGGTTTAACTAAGGCCTTTTTCATAATAATAGCCACTTTCT 1027 |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 956 TACTAGCCACGGTCGGTGTAGGTTTAACTAAGGCCTTTTTCATAATAATAGCTACTTTCT 1015 Query 1028 TGCTCGACAAGGTAGGTCGTAGAAAGCTCCTGTTGACCAGTACGGGTGGGATGGTCTTCG 1087 |||| |||||||||||||| |||||||| || |||||||| ||||||||||||||||||| Sbjct 1016 TGCTAGACAAGGTAGGTCGGAGAAAGCTTCTATTGACCAGCACGGGTGGGATGGTCTTCG 1075 Query 1088 CATTGACCAGTTTAGCGGTTAGTCTCACGATGGTTCAGCGATTTGGGCGGTTAGCGTGGG 1147 || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1076 CACTGACCAGTTTAGCGGTTAGTCTCACGATGGTTCAGCGATTTGGGCGGTTAGCGTGGG 1135 Query 1148 CATTGAGTTTAAGCATCGTCTCTACGTATGCATTTGTAGCTTTTTTCTCCATAGGGCTTG 1207 ||||||||||||||||||||||||| |||||||||||||| ||||||||||| ||||||| Sbjct 1136 CATTGAGTTTAAGCATCGTCTCTACATATGCATTTGTAGCGTTTTTCTCCATTGGGCTTG 1195 Query 1208 GACCTATCACATGGGTGTACAGCTCCGAGATATTCCCGTTGAGACTTAGGGCTCAGGGAG 1267 | ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 1196 GGCCTATCACATGGGTGTATAGCTCCGAGATATTCCCGTTGAGACTTAGGGCTCAGGGAG 1255 Query 1268 CGAGTATAGGTGTTGCGGTTAATAGGATCATGAACGCGACGGTCTCAATGAGTTTTCTGT 1327 ||| ||| | ||||||||||||||||||||||| ||||||||||||||||||||||| | Sbjct 1256 TGAGCATATGCGTTGCGGTTAATAGGATCATGAATGCGACGGTCTCAATGAGTTTTCTAT 1315 Query 1328 CGATGACGAAGGCGATCACGACAGGGGGCGTGTTCTTCGTATTCGCCGGAATAGCGGTGG 1387 | ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 1316 CCATGACGAAGGCGATCACGACAGGGGGCGTGTTCTTCGTATTCGCCGGAATAGCCGTGG 1375 Query 1388 CGGCATGGTGGTTCTTCTTCTTTATGTTGCCGGAGACGAAAGGATTGCCATTGGAGGAGA 1447 | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1376 CCGCATGGTGGTTCTTCTTCTTTATGTTGCCGGAGACGAAAGGATTGCCATTGGAGGAGA 1435 Query 1448 TGGAGAAGCTTTTTGGTGGTGGGGGTCCTCGTGGTGATCGTGACGGACTTGAGATTCAAA 1507 |||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||| Sbjct 1436 TGGAGAAGCTTTTTGGTGGTGGGGGTCCTCGTGGTGATCGCGACGGACTAGAGATTCAAA 1495 Query 1508 CTAA 1511 |||| Sbjct 1496 CTAA 1499 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 67495914140 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5