BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT2G18560.1 Length=1769 Score E Sequences producing significant alignments: (Bits) Value Ahg319804 jgi|Araly1|319804|fgenesh1_pm.C_scaffold_3002820 1620 0.0 Ahg480763 jgi|Araly1|480763|fgenesh2_kg.3__3464__AT2G18570.1 1399 0.0 > Ahg319804 jgi|Araly1|319804|fgenesh1_pm.C_scaffold_3002820 Length=1335 Score = 1620 bits (877), Expect = 0.0 Identities = 1057/1146 (92%), Gaps = 4/1146 (0%) Strand=Plus/Plus Query 408 GATGCGAGAAATGAAGTCCACGGTTCGTGATGCCGTGAAATCAATGAAGCAAAAACCGAC 467 |||||||| |||| | || ||||||| |||||||||||||||||||||||||||||||| Sbjct 192 GATGCGAGCCATGACGCCCGCGGTTCGAGATGCCGTGAAATCAATGAAGCAAAAACCGAC 251 Query 468 GGTCATGATTGTTGACTTTTTTGGTACAGCGTTGTTGTCCATAACCGATGTAGGTGTGAC 527 ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 252 GGTCATGATCGTTGACTTTTTTGGTACAGCGTTGTTGTCCATAACCGATGTAGGTGTGAC 311 Query 528 GAG-TAAGTATGTGTACATACCGTCTCACGCGTGGTTCTTGGCATTAATTGTCTACTTGC 586 | | ||||||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 312 G-GCTAAGTATGTGTACATACCGTCGCACGCGTGGTTCTTGGCATTAATTGTCTACTTGC 370 Query 587 CGGTATTGGATAAGGTAATGGAAGGTGAGTATGTTGATATTAAGGAGCCTATGAAAATAC 646 | || |||||||||| | |||||||||||||||||||||||||||||||||||||||||| Sbjct 371 CAGTGTTGGATAAGGCAGTGGAAGGTGAGTATGTTGATATTAAGGAGCCTATGAAAATAC 430 Query 647 CAGGTTGTAAACCGGTCGGACCAAAAGAGCTTTTGGACACAATGTTAGACCGGTCCGACC 706 ||||||||||||||||||||||||| |||||||||||||| |||||||||||||| |||| Sbjct 431 CAGGTTGTAAACCGGTCGGACCAAAGGAGCTTTTGGACACGATGTTAGACCGGTCGGACC 490 Query 707 AACAATACCGTGATTGTGTACAGATTGGGTTGGAGATACCTATGAGCGATGGAGTTTTGG 766 |||| |||||||| |||||||||| ||| ||||||||||||||||||||||| ||||||| Sbjct 491 AACAGTACCGTGAGTGTGTACAGAGTGGTTTGGAGATACCTATGAGCGATGGCGTTTTGG 550 Query 767 TAAATACTTGGGGGGAGTTACAAGGGAAGACTCTAGCTGCGCTAAGAGAGGACATAGATT 826 |||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 551 TAAATACTTGGGAGGAGTTACAAGGGAAGACTCTAGCTGCGCTAAGAGAGGACATGGATT 610 Query 827 TGAACCGGGTTATAAAAGTACCGGTTTATCCTATTGGACCTATTGTTAGGACTAATGTGC 886 ||||||||||||| ||||||||||| || |||||||| |||||||||||| ||||||||| Sbjct 611 TGAACCGGGTTATGAAAGTACCGGTCTACCCTATTGGGCCTATTGTTAGGTCTAATGTGC 670 Query 887 TTATTGAAAAACCAAACAGTACATTCGAGTGGCTAGACAAACAAGAGGAAAGATCTGTTG 946 |||||||||||| ||| |||| || ||||||||||||||||||| ||||||||| ||| Sbjct 671 TTATTGAAAAACGAAATAGTATTTTGGAGTGGCTAGACAAACAAGGGGAAAGATCAGTTT 730 Query 947 TATATGTGTGTTTAGGGAGTGGTGGAACATTGTCGTTTGAGCAAACGATGGAACTAGCTT 1006 | |||||||||||||||||||||||||| |||||||| ||||||||||||||||| |||| Sbjct 731 TGTATGTGTGTTTAGGGAGTGGTGGAACGTTGTCGTTGGAGCAAACGATGGAACTCGCTT 790 Query 1007 GGGGGTTAGAGTTAAGTTGTCAAAGTTTCTTATGGGTTCTACGTAAGCCTCCTTCTTACC 1066 |||| |||||||||||| | ||||||||| |||||||||| |||| |||| |||||||| Sbjct 791 GGGGTTTAGAGTTAAGTGGCCAAAGTTTCCTATGGGTTCTTCGTAGGCCTGTTTCTTACC 850 Query 1067 TTGGAGCAAGCTCAAAAGATGATGATCAAGTAAGTGACG-GTCTACCAGAAGGTTTCTTG 1125 |||| | ||||||||||||||||||||||| |||| | |||||||||||||||||||| Sbjct 851 TTGGTGGGAGCTCAAAAGATGATGATCAAGTGAGTG-CTTGTCTACCAGAAGGTTTCTTG 909 Query 1126 GACCGCACACGTGGTGTAGGGCTTGTGGTAACGCAATGGGCACCGCAAGTTGAGATCTTA 1185 ||||| |||||||||||||| ||||||| ||| |||||||||| |||||||||||||| Sbjct 910 GACCGTACACGTGGTGTAGGTTTTGTGGTCACGGAATGGGCACCACAAGTTGAGATCTTG 969 Query 1186 AGCCATAGATCAATCGGTGGGTTTTTGTCACATTGTGGTTGGAGCTCGGTGTTGGAGAGT 1245 |||||||||||||||||||||||||| || ||||||||||||||||| || ||||||||| Sbjct 970 AGCCATAGATCAATCGGTGGGTTTTTATCTCATTGTGGTTGGAGCTCAGTCTTGGAGAGT 1029 Query 1246 TTAACTAAAGGAGTTCCGATCATCGCTTGGCCTCTTTATGCGGAGCAATGGATGAATGCC 1305 || |||||||||||||||||| | ||||||||||| |||||||||||||||||||||||| Sbjct 1030 TTGACTAAAGGAGTTCCGATCGTTGCTTGGCCTCTATATGCGGAGCAATGGATGAATGCC 1089 Query 1306 ACGTTGCTGACGGAGGAGATTGGTATGGCTATTCGTACGTCAGAGTTACCGTCGAAGAAA 1365 ||||||||||| |||||||||||| |||| |||||||||||||| |||||||| |||||| Sbjct 1090 ACGTTGCTGACAGAGGAGATTGGTGTGGCCATTCGTACGTCAGATTTACCGTCAAAGAAA 1149 Query 1366 GTGATCAGCCGGGAAGAAGTGGCGTCTTTGGTGAAGAAGATTGTAGCGGAAGAGGATAAA 1425 |||||| |||||||||||||||||| ||||||||| |||||||||| ||||||||||||| Sbjct 1150 GTGATCGGCCGGGAAGAAGTGGCGTATTTGGTGAAAAAGATTGTAGTGGAAGAGGATAAA 1209 Query 1426 GAAGGACGAAAGATAAAGACTAAAGCTGAAGAGGTGAGGGTTAGCTCCGAACGAGCTTGG 1485 |||||||| ||||||||| ||| |||||| |||||||||||||||||||||||||||||| Sbjct 1210 GAAGGACGGAAGATAAAGGCTAGAGCTGAGGAGGTGAGGGTTAGCTCCGAACGAGCTTGG 1269 Query 1486 ACTCATGGTGGGTCGTCTCATAGTTCTCTCTTTGAATGGGCAAAACGATGTGGGCTTGTA 1545 |||||||||||||||||||||||||||||| |||||||||||||||| ||| | ||||| Sbjct 1270 ACTCATGGTGGGTCGTCTCATAGTTCTCTCGTTGAATGGGCAAAACGGTGTCGTCTTGTG 1329 Query 1546 TCTTAA 1551 |||||| Sbjct 1330 TCTTAA 1335 Score = 252 bits (136), Expect = 8e-66 Identities = 172/189 (91%), Gaps = 3/189 (2%) Strand=Plus/Plus Query 143 ATGGAGCATCCTCACG-TGCTTTTAGTCGCTAGCCCTGGCTTGGGGCACCTTATCCCTGC 201 ||||| || ||||||| | ||| |||||||||||||||||||||| |||||||||||||| Sbjct 1 ATGGACCAGCCTCACGCT-CTTGTAGTCGCTAGCCCTGGCTTGGGCCACCTTATCCCTGC 59 Query 202 CCTCGAACTCGGAAACCGTCTCTCCTTCGTCCTCAACGTCCACGTCACCATTCTTGCAAT 261 |||||||||||| ||||||||||||| | ||||||| || ||||||||||||||||||| Sbjct 60 CCTCGAACTCGGCAACCGTCTCTCCTCCATCCTCAATATCAACGTCACCATTCTTGCAAT 119 Query 262 CACCTCCGGCTCCTCTTCCCTCACAGAAACCGAGACCATACATACAGCCGCGGCTAGAGG 321 ||||||||||||||||||||| ||||||||||||| |||||| |||||||||||||||| Sbjct 120 CACCTCCGGCTCCTCTTCCCTGACAGAAACCGAGATGATACATGCAGCCGCGGCTAGAGG 179 Query 322 GACCTGTGA 330 ||||| ||| Sbjct 180 GACCT-TGA 187 > Ahg480763 jgi|Araly1|480763|fgenesh2_kg.3__3464__AT2G18570.1 Length=1631 Score = 1399 bits (757), Expect = 0.0 Identities = 1220/1441 (85%), Gaps = 42/1441 (3%) Strand=Plus/Plus Query 139 GATCATGGAGCATCCTCACGTGCTTTTAGTCGCTAGCCCTGGCTTGGGGCACCTTATCCC 198 ||||||||| || ||||||| |||| |||||||||||||||||||||| ||||| ||||| Sbjct 105 GATCATGGACCAGCCTCACGCGCTTCTAGTCGCTAGCCCTGGCTTGGGTCACCTCATCCC 164 Query 199 TGCCCTCGAACTCGGAAACCGTCTCTCCTTCGTCCTCAACGTCCACGTCACCATTCTTGC 258 | |||||||||||||||||||||||||| |||||| ||| ||||||||||||| || || Sbjct 165 TATCCTCGAACTCGGAAACCGTCTCTCCTCCGTCCTAAACATCCACGTCACCATACTCGC 224 Query 259 AATCACCTCCGGCTCCTCTTC-CCTCACAGAAACCG-AGACCATACATACAGCCGCGGCT 316 |||||||||||||||| || || |||||||||| || |||||| | ||||||| ||| Sbjct 225 CGTCACCTCCGGCTCCTCGTCACC-GACAGAAACCGAAG-CCATACGTGCAGCCGCTGCT 282 Query 317 AG-AGGGACCTGTGAAATTATC-GAA-TTACCCTCTGTCGATATAGACCACCTAGTGGAG 373 || | | ||||||||| || | ||| || ||||| || ||||||||| |||| |||||| Sbjct 283 AGAACTG-CCTGTGAAA-TAACGGAACTT-CCCTCGGTGGATATAGACAACCTCGTGGAG 339 Query 374 CCAGATGCGACAGTGGTCACTAA-ATAGTGAG-CAAGATGCGAGAAATGAAGTCCACGGT 431 |||||||| || |||| |||||| || ||| | |||||||||| |||||||||| || Sbjct 340 CCAGATGCAACGGTGGCCACTAAGATCGTG-GTAAAGATGCGAGCCATGAAGTCCAAAGT 398 Query 432 TCGTGATGCCGTGAAATCAATGAAGCAAAAACCGA-CGGTCATGATTGTTGACTTTTTTG 490 |||||| |||||| |||||||||||| |||||| | |||||||||| ||||||||||||| Sbjct 399 TCGTGACGCCGTGGAATCAATGAAGCGAAAACC-AGCGGTCATGATCGTTGACTTTTTTG 457 Query 491 GTACAGCGTTGTTGTCCATAACCGAT---GTAGG-TGTGACGAG-TAAGTATGTGTACAT 545 |||| | |||| ||| | || ||||| ||||| | ||||| | |||||| |||||||| Sbjct 458 GTACGGGGTTGATGTGCGTAGCCGATGACGTAGGCT-TGACG-GCTAAGTACGTGTACAT 515 Query 546 ACCGTCTCACGCGTGGTTCTTGGCATTAATTGTCTACTTGCCGGTATTGGATAAGGTAAT 605 || || || ||||||||||| ||| | || || ||||||||||| || |||| |||| | Sbjct 516 CCCCTCGCATGCGTGGTTCTTAGCAGTCATGGTGTACTTGCCGGTGTTAGATACGGTAGT 575 Query 606 GGAAGGTGAGTATGTTGATATTAAGGAGCCTATGAAAATACCAGGTTGTAAACCGGTCGG 665 ||||||||||||||||||||||||||||||| | |||||||| ||||||||||||||||| Sbjct 576 GGAAGGTGAGTATGTTGATATTAAGGAGCCTTTAAAAATACCGGGTTGTAAACCGGTCGG 635 Query 666 ACCAAAAGAGCTTTTGGACACAATGTTAGACCGGTCCGACCAACAATACCGTGATTGTGT 725 || ||| ||||| |||| || |||||||||||||| ||||| ||||| || ||||| Sbjct 636 ACGAAAGGAGCTGATGGAAACGATGTTAGACCGGTCGGACCAGCAATATAAAGAGTGTGT 695 Query 726 AC-AGATTGGGTTGGAGATACCTATGAGCGATGGAGTTTTGGTAAATACTTGGGGGGAGT 784 || || |||| || ||| |||||||||||||||| ||||| ||||||||||||| ||||| Sbjct 696 ACGAG-TTGGCTTAGAGGTACCTATGAGCGATGGTGTTTTAGTAAATACTTGGGAGGAGT 754 Query 785 TACAAGGGAAGACTCTAGCTGCGCTAAGAGAGGACATAGATTTGAACCGGGTTATAAAAG 844 ||||||| || ||||| |||||| | ||||||||| ||| || |||||||| || |||| Sbjct 755 TACAAGGAAACACTCTCGCTGCGTTTAGAGAGGACGGAGAGTTAAACCGGGTCATGAAAG 814 Query 845 TACCGGTTTATCCTATTGGACCTATTGTTAGGACTAATGTGCTTATTGAAAAAC-CAAAC 903 ||| ||||||||||||||| |||||||||||||||| | || | | ||||||| ||| Sbjct 815 TACTGGTTTATCCTATTGGGCCTATTGTTAGGACTAGCGGGCATGTGGAAAAACTCAAT- 873 Query 904 AGTACATTCGAGTGGCTAGACAAACAAGAGGAAAGATC--TGTTGTATATGTGTGTTTAG 961 |||| ||||||||||||||||||||||| |||| | || |||||||| |||||||||| Sbjct 874 AGTATATTCGAGTGGCTAGACAAACAAGGGGAACGGTCAGTGTTGTAT--GTGTGTTTAG 931 Query 962 GGAGTGGTGGAACATTGTCGTTTGAGCAAAC-GATGGAACTAGCTTGGGGGTTAGAGTTA 1020 |||| |||||||| ||| ||||||||||||| | ||||||| |||||||| ||||||||| Sbjct 932 GGAGCGGTGGAACGTTGACGTTTGAGCAAACAG-TGGAACTCGCTTGGGGTTTAGAGTTA 990 Query 1021 AGTTGTCAAAGTTTC-TTATGGGTTCTACGTAAGCCTC-CTTCTTACCTTGGAGCAAGCT 1078 ||| ||||||| ||| || ||||||||||||| ||| | |||||||||| || | |||| Sbjct 991 AGTGGTCAAAGGTTCGTT-TGGGTTCTACGTAGGCC-CGCTTCTTACCTCGGGGTGAGCT 1048 Query 1079 CAAAAGATGATGATCAAGTAAGTGACG-GTCTACCAGAAGGTTTCTTGGACCGCACACGT 1137 ||| ||||||||||| || | | || | ||||| || ||||||||||| ||||| || Sbjct 1049 CAAGCGATGATGATCAGGTGATT-ACCAGCCTACCTGACGGTTTCTTGGATCGCACGTGT 1107 Query 1138 GGTGTAGGGCTTGTGGTAACGCAATGGGCACCGCAAGTTGAGATCTTAAGCCATAGATCA 1197 ||||| ||||||||||| ||||||||||||||||||||||||||||| ||||||||||| Sbjct 1108 GGTGTGGGGCTTGTGGTTACGCAATGGGCACCGCAAGTTGAGATCTTGAGCCATAGATCG 1167 Query 1198 ATCGGTGGGTTTTTGTCACATTGTGGTTGGAGCTCGGTGTTGGAGAGTTTAACTAAAGGA 1257 ||||||||||| ||||| ||||| |||||||| ||||||||||| ||||| ||||||||| Sbjct 1168 ATCGGTGGGTTCTTGTCTCATTGCGGTTGGAGTTCGGTGTTGGAAAGTTTGACTAAAGGA 1227 Query 1258 GTTCCGATCATCGCTTGGCCTCTTTATGCGGAGCAATGGATGAATGCCACGTTGCTGACG 1317 ||||||||| | ||||||||||||||||||||||| |||||||||| |||||| ||||| Sbjct 1228 GTTCCGATCGTGGCTTGGCCTCTTTATGCGGAGCAGTGGATGAATGTCACGTTACTGACT 1287 Query 1318 GAGGAGATTGGTATGGCTATTCGTACGTCAGAGTTACCGTC-GAAGAAAGTGATCAGCCG 1376 |||||||| ||| |||| ||||||||| |||||||| || || |||||| ||| | || Sbjct 1288 GAGGAGATCGGTGTGGCCGTTCGTACGTTGGAGTTACCATCAGA-GAAAGTCATCGGACG 1346 Query 1377 GGAAGAAGTGGCGTCTTTGGTGAAGAAGATTGTAGCGGAAGAGGATAAAGAAGGAC-GAA 1435 |||||||||||| ||| |||||| ||||||||| |||||||||||| ||||||||| | | Sbjct 1347 GGAAGAAGTGGCATCTCTGGTGAGGAAGATTGTGGCGGAAGAGGATGAAGAAGGACAGGA 1406 Query 1436 AGATAAAGACTAAAGCTGAAGAGGTGAGGGTTAGCTCCGAACGAGCTTGGACTCATGGTG 1495 | || | | |||||||||||||||||| ||||||||||||| ||||||||| ||| |||| Sbjct 1407 A-ATTAGGGCTAAAGCTGAAGAGGTGAAGGTTAGCTCCGAAAGAGCTTGGAGTCAAGGTG 1465 Query 1496 GGTCGTCTCATAGTTCTCTCTTTGAATGGGCAAAACGATGTGGGCTTGTATCTTAATTTG 1555 | || ||| ||| |||||| ||||||||||||||||||||| |||||||| | ||||| Sbjct 1466 GATCATCTTATAATTCTCTATTTGAATGGGCAAAACGATGTTATCTTGTATCGTGATTTG 1525 Query 1556 A 1556 | Sbjct 1526 A 1526 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 66391297035 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5