BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT2G18915.2 Length=2284 Score E Sequences producing significant alignments: (Bits) Value Ahg343571 jgi|Araly1|343571|fgenesh1_pg.C_scaffold_3003334 2892 0.0 Ahg921495 jgi|Araly1|921495|scaffold_102776.1 418 9e-116 Ahg930924 jgi|Araly1|930924|scaffold_303381.1 411 2e-113 Ahg906699 jgi|Araly1|906699|Al_scaffold_0003_3827 388 7e-107 > Ahg343571 jgi|Araly1|343571|fgenesh1_pg.C_scaffold_3003334 Length=1824 Score = 2892 bits (1566), Expect = 0.0 Identities = 1742/1828 (95%), Gaps = 8/1828 (0%) Strand=Plus/Plus Query 241 ATGGAGTGGGATAGTGATTCCGATCTCAGCGGTGGAGATGAAGTGGCGGAGGATGGATGG 300 |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 1 ATGGAGTGGGATAGTGATTCCGATCTCAGCGGGGGAGATGAAGTGGCGGAGGATGGATGG 60 Query 301 TTCGGTGGAGATAACGGAGCGATTCCGTTTCCGGTAGGTAGTCTTCCTGGCACGGCGCCG 360 ||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 61 TTCGGCGGAGATAACGGAGCGATTCCGTTTCCGGTAGGTAGTCTTCCTGGAACGGCGCCG 120 Query 361 TGTGGGTTTGTGGTCAGCGATGCTCTTGAACCTGACAACCCTATCATTTATGTTAACACT 420 ||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 121 TGTGGTTTTGTGGTCAGCGATGCTCTTGAACCTGATAACCCTATCATTTATGTTAACACT 180 Query 421 GTTTTTGAGATTGTTACTGGTTATCGAGCTGAAGAAGTTATTGGTCGAAATTGCCGTTTC 480 |||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||| Sbjct 181 GTTTTTGAGATTGTTACTGGTTATCGAGCTGAGGAAGTTATTGGTCGAAATTGCCGGTTC 240 Query 481 TTGCAATGTAGAGGGCCATTTACTAAAAGAAGGCATCC-AATGGTAGATTCTACAATTGT 539 || |||||||||||||||||| |||||||||||||||| ||| ||||||||||||||||| Sbjct 241 TTACAATGTAGAGGGCCATTTGCTAAAAGAAGGCATCCAAAT-GTAGATTCTACAATTGT 299 Query 540 AG-CGAAGATGCGACAATGTCTAGAAAATGGCATCGAGTTTCAAGGCGAGTTGCTCAACT 598 | |||||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 300 -GACGAAGATGCGGCAATGTCTAGAAAATGGCATCGAGTTTCAAGGCGAGTTGCTCAACT 358 Query 599 TTCGGAAAGATGGATCTCCCTTGATGAACAAGCTGCGTCTAGTCCCTATCCGTGAAGAAG 658 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 359 TTCGGAAAGATGGATCTCCCTTGATGAACAAGCTGCGTCTAGTCCCTATCCGTGAAGAAG 418 Query 659 ACGAAATCACTCATTTCATAGGCGTTCTCTTATTTACAGATGCAAAAATTGATCTTGGCC 718 |||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||| Sbjct 419 ACGAAATCACTCATTTCATAGGCGTTCTTTTATTCACAGATGCAAAAATTGATCTTGGCC 478 Query 719 CATCTCCTGATTTATCTGCAAAAGAAATTCCTAGAATATCTCGCTCATTTACTTCTGCTT 778 ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 479 CATCTCCTGATTTATCTGCAAAAGAAATTCCAAGAATATCTCGCTCATTTACTTCTGCTT 538 Query 779 TACCAATCGGAGAGCGTAATGTTTCTCGTGGACTCTGTGGGATATTCGAACTGAGTGATG 838 |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 539 TACCAATCGGAGAGCGTAATGTTTCTCGTGGACTTTGTGGGATATTCGAACTGAGTGATG 598 Query 839 AAGTAATAGCTATCAAGATATTGTCACAGTTGACTCCTGGTGATATTGCATCGGTTGGTT 898 | || ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 599 AGGTCATAGCTATCAAGATATTGTCACAGTTGACTCCTGGTGATATTGCATCGGTTGGTT 658 Query 899 GTGTATGTAGGCGGCTCAATGAGTTGACAAAGAATGATGATGTGTGGAGAATGGTCTGTC 958 |||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 659 GTGTATGTCGGCGGCTCAATGAGTTGACAAAGAATGATGATGTATGGAGAATGGTCTGTC 718 Query 959 AAAACACATGGGGTACCGAGGCAACACGTGTTCTTGAGAGTGTTCCCGGTGCAAAAAGGA 1018 |||||||||||||||| ||||||||||||||||||||||||||||| |||||||| |||| Sbjct 719 AAAACACATGGGGTACAGAGGCAACACGTGTTCTTGAGAGTGTTCCTGGTGCAAAGAGGA 778 Query 1019 TTGGTTGGGTGCGACTGGCCCGAGAGTTCACCACTCACGAAGCAACAGCATGGAGGAAGT 1078 | |||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||| Sbjct 779 TCGGTTGGGTGCGACTGGCCCGAGAGTTTACCACACACGAAGCAACAGCATGGAGGAAGT 838 Query 1079 TTTCAGTTGGAGGTACTGTTGAGCCTTCTCGGTGTAATTTCAGCGCATGTGCAGTTGGGA 1138 |||| ||||||||||||||||||||||| |||||||||||||| |||||||||||||||| Sbjct 839 TTTCGGTTGGAGGTACTGTTGAGCCTTCCCGGTGTAATTTCAGTGCATGTGCAGTTGGGA 898 Query 1139 ACAGGATTGTTATCTTTGGCGGGGAAGGTGTGAATATGCAGCCGATGAATGATACATTTG 1198 ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 899 ACAGGATTGTTATCTTTGGCGGGGAAGGTGTAAATATGCAGCCGATGAATGATACATTTG 958 Query 1199 TGTTGGACCTTGGCTCGAGTAGTCCCGAGTGGAAATCTGTTCTGGTCAGCTCTCCTCCTC 1258 |||||||||||||||||||||| |||||||||||||| |||||||||||||||||||| | Sbjct 959 TGTTGGACCTTGGCTCGAGTAGCCCCGAGTGGAAATCCGTTCTGGTCAGCTCTCCTCCAC 1018 Query 1259 CGGGTCGCTGGGGTCACACACTTTCTTGTGTCAACGGTTCCCGTTTAGTAGTGTTTGGAG 1318 |||| ||||||||||||||||||||||||||||| || |||||||||||||||||||||| Sbjct 1019 CGGGGCGCTGGGGTCACACACTTTCTTGTGTCAATGGATCCCGTTTAGTAGTGTTTGGAG 1078 Query 1319 GTTACGGGAGCCACGGATTACTCAATGATGTGTTCTTATTAGACCTTGATGCAGACCCAC 1378 ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| | Sbjct 1079 GTTACGGGAGCCACGGATTACTCAACGATGTGTTCTTATTAGACCTTGATGCAGACCCGC 1138 Query 1379 CAAGCTGGAGGGAAGTATCCGGATTGGCCCCTCCAATACCAAGATCATGGCACAGTTCGT 1438 |||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 1139 CAAGCTGGAGAGAAGTATCCGGATTGGCTCCTCCAATACCAAGATCATGGCACAGTTCGT 1198 Query 1439 GCACACTTGATGGCACTAAGCTGATTGTATCTGGTGGTTGTGCTGATTCAGGAGCTCTAC 1498 ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 1199 GCACACTTGATGGCACTAAGCTGATTGTATCAGGTGGTTGTGCTGATTCAGGAGCTCTAC 1258 Query 1499 TCAGCGATACATTCCTGCTTGACCTATCGATGGATATACCTG-CTTGGAGGGAGATACCG 1557 ||||||||||||||||||||||||| |||||||||||||| | |||||||||||||||| Sbjct 1259 TCAGCGATACATTCCTGCTTGACCTTTCGATGGATATACC-GACTTGGAGGGAGATACCA 1317 Query 1558 GTTCCATGGACTCCCCCATCTCGCCTCGGGCATACTCTAACTGTCTATGGTGACCGCAAG 1617 |||||||||||||| |||||||||||||| ||||| ||||| |||||||||||||||||| Sbjct 1318 GTTCCATGGACTCCTCCATCTCGCCTCGGACATACACTAACCGTCTATGGTGACCGCAAG 1377 Query 1618 ATTCTTATGTTTGGCGGTCTAGCTAAAAACGGTACTTTGAGATTCCGCTCTAACGATGTA 1677 || || |||||||||||||| || |||| |||| || ||||||||||||||||||||||| Sbjct 1378 ATCCTCATGTTTGGCGGTCTTGCCAAAAGCGGTTCTCTGAGATTCCGCTCTAACGATGTA 1437 Query 1678 TACACGATGGATCTTAGCGAGGATGAACCGAGTTGGAGACCTGTGATTGGGTATGGATCT 1737 |||||||||||||||||||||||||| || ||||||||||| |||||||||||||||||| Sbjct 1438 TACACGATGGATCTTAGCGAGGATGAGCCAAGTTGGAGACCCGTGATTGGGTATGGATCT 1497 Query 1738 AGCCTCCCCGGAGGCATGGCAGCTCCACCACCAAGGCTGGACCATGTGGCAATCAGCCTT 1797 |||||||| ||||||||||||||||| ||| |||||||||| |||||||||||||||||| Sbjct 1498 AGCCTCCCGGGAGGCATGGCAGCTCCGCCATCAAGGCTGGATCATGTGGCAATCAGCCTT 1557 Query 1798 CCCGGTGGTAGAATCTTGATCTTTGGTGGTTCGGTTGCAGGGCTTGACTCGGCTTCTCAG 1857 || ||||||||||||||||||||||||||||| ||||||||||||||||| || |||||| Sbjct 1558 CCTGGTGGTAGAATCTTGATCTTTGGTGGTTCAGTTGCAGGGCTTGACTCAGCATCTCAG 1617 Query 1858 CTTTATCTTCTTGATCCAA-ATGAGGAGAAACCGGCATGGAGAATACTGAATGTTCAGGG 1916 ||||||||||||||||||| | ||||||||||| |||||||||||||||||||||||||| Sbjct 1618 CTTTATCTTCTTGATCCAACA-GAGGAGAAACCAGCATGGAGAATACTGAATGTTCAGGG 1676 Query 1917 AGGTCCGCCGAGGTTTGCATGGGGACACACAACATGTGTGGTCGGAGGAACTCGATTGGT 1976 |||||||||||||||||| ||||||||||| || ||||| |||||||||||||| ||||| Sbjct 1677 AGGTCCGCCGAGGTTTGCGTGGGGACACACCACTTGTGTAGTCGGAGGAACTCGGTTGGT 1736 Query 1977 CGTATTAGGTGGTCAGACCGGTGAAGAGTGGATGTTAAATGAAGCACATGAACTGTTACT 2036 ||| ||||||||||| |||||||||||||||||| |||||||||| |||||||| ||| | Sbjct 1737 CGTCTTAGGTGGTCAAACCGGTGAAGAGTGGATGCTAAATGAAGCTCATGAACTATTATT 1796 Query 2037 AGCAACTTCTACCACTGCAAGTACTTGA 2064 |||||| ||||| |||||||| |||||| Sbjct 1797 AGCAACGTCTACTACTGCAAGCACTTGA 1824 > Ahg921495 jgi|Araly1|921495|scaffold_102776.1 Length=279 Score = 418 bits (226), Expect = 9e-116 Identities = 244/253 (96%), Gaps = 0/253 (0%) Strand=Plus/Plus Query 221 GGGTGTGTATGCAAAATCAAATGGAGTGGGATAGTGATTCCGATCTCAGCGGTGGAGATG 280 ||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 1 GGGTGTGTAAGCAAAATCAAATGGAGTGGGATAGTGATTCCGATCTCAGCGGGGGAGATG 60 Query 281 AAGTGGCGGAGGATGGATGGTTCGGTGGAGATAACGGAGCGATTCCGTTTCCGGTAGGTA 340 ||||||||||||||||||||||||| |||| |||| |||||||||||||||||||||||| Sbjct 61 AAGTGGCGGAGGATGGATGGTTCGGCGGAGGTAACAGAGCGATTCCGTTTCCGGTAGGTA 120 Query 341 GTCTTCCTGGCACGGCGCCGTGTGGGTTTGTGGTCAGCGATGCTCTTGAACCTGACAACC 400 |||||||||| |||||||||||||| ||||||||||||||||||||||||||||| |||| Sbjct 121 GTCTTCCTGGAACGGCGCCGTGTGGTTTTGTGGTCAGCGATGCTCTTGAACCTGATAACC 180 Query 401 CTATCATTTATGTTAACACTGTTTTTGAGATTGTTACTGGTTATCGAGCTGAAGAAGTTA 460 |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 181 CTATCATTTATGTTAACACTGTTTTTGAGATTGTTACTGGTTATCGAGCTGAGGAAGTTA 240 Query 461 TTGGTCGAAATTG 473 ||||||||||||| Sbjct 241 TTGGTCGAAATTG 253 > Ahg930924 jgi|Araly1|930924|scaffold_303381.1 Length=281 Score = 411 bits (222), Expect = 2e-113 Identities = 244/255 (96%), Gaps = 0/255 (0%) Strand=Plus/Plus Query 219 GTGGGTGTGTATGCAAAATCAAATGGAGTGGGATAGTGATTCCGATCTCAGCGGTGGAGA 278 ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1 GTGGGTGTGTAAGCAAAATCAAATGGAGTGGGATAGTGATTCCGATCTCAGCGGTGGAGA 60 Query 279 TGAAGTGGCGGAGGATGGATGGTTCGGTGGAGATAACGGAGCGATTCCGTTTCCGGTAGG 338 ||| ||||||||||||||||||||||| |||| |||| |||||||||||||||||||||| Sbjct 61 TGAGGTGGCGGAGGATGGATGGTTCGGCGGAGGTAACAGAGCGATTCCGTTTCCGGTAGG 120 Query 339 TAGTCTTCCTGGCACGGCGCCGTGTGGGTTTGTGGTCAGCGATGCTCTTGAACCTGACAA 398 |||||||||||| || ||| ||||||| ||||||||||||||||||||||||||||| || Sbjct 121 TAGTCTTCCTGGAACAGCGTCGTGTGGTTTTGTGGTCAGCGATGCTCTTGAACCTGATAA 180 Query 399 CCCTATCATTTATGTTAACACTGTTTTTGAGATTGTTACTGGTTATCGAGCTGAAGAAGT 458 |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 181 CCCTATCATTTATGTTAACACTGTTTTTGAGATTGTTACTGGTTATCGAGCTGAGGAAGT 240 Query 459 TATTGGTCGAAATTG 473 ||||||||||||||| Sbjct 241 TATTGGTCGAAATTG 255 > Ahg906699 jgi|Araly1|906699|Al_scaffold_0003_3827 Length=288 Score = 388 bits (210), Expect = 7e-107 Identities = 226/234 (97%), Gaps = 0/234 (0%) Strand=Plus/Plus Query 241 ATGGAGTGGGATAGTGATTCCGATCTCAGCGGTGGAGATGAAGTGGCGGAGGATGGATGG 300 |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 1 ATGGAGTGGGATAGTGATTCCGATCTCAGCGGGGGAGATGAAGTGGCGGAGGATGGATGG 60 Query 301 TTCGGTGGAGATAACGGAGCGATTCCGTTTCCGGTAGGTAGTCTTCCTGGCACGGCGCCG 360 ||||| |||| |||| |||||||||||||||||||||||||||||||||| ||||||||| Sbjct 61 TTCGGCGGAGGTAACAGAGCGATTCCGTTTCCGGTAGGTAGTCTTCCTGGAACGGCGCCG 120 Query 361 TGTGGGTTTGTGGTCAGCGATGCTCTTGAACCTGACAACCCTATCATTTATGTTAACACT 420 ||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 121 TGTGGTTTTGTGGTCAGCGATGCTCTTGAACCTGATAACCCTATCATTTATGTTAACACT 180 Query 421 GTTTTTGAGATTGTTACTGGTTATCGAGCTGAAGAAGTTATTGGTCGAAATTGC 474 |||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 181 GTTTTTGAGATTGTTACTGGTTATCGAGCTGAGGAAGTTATTGGTCGAAATTGC 234 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 86007773210 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5