BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT2G19180.1 Length=864 Score E Sequences producing significant alignments: (Bits) Value Ahg906784 jgi|Araly1|906784|Al_scaffold_0003_3912 771 0.0 > Ahg906784 jgi|Araly1|906784|Al_scaffold_0003_3912 Length=546 Score = 771 bits (417), Expect = 0.0 Identities = 504/546 (92%), Gaps = 6/546 (1%) Strand=Plus/Plus Query 27 ATGTCTCGATTGCTCTCAAAAACCCTAATTCCCAACGGAAGATTCCTCCTCCGTCGTTTC 86 ||||||||||||||||| ||||||||||||||| ||||||||||| |||||||||||||| Sbjct 1 ATGTCTCGATTGCTCTCCAAAACCCTAATTCCCCACGGAAGATTCTTCCTCCGTCGTTTC 60 Query 87 AACGAGCCGGCGATTACGAC-A-----CCACCAAACGTCGTCTGTTTCAGCCGCCGCTTT 140 |||||||| |||||||||| | ||||||| | ||||||||||||||||||||||| Sbjct 61 AACGAGCCAACGATTACGACGACGGCCCCACCAAGCCTCGTCTGTTTCAGCCGCCGCTTT 120 Query 141 TCATCCATCCCACAAGTCATCGAGCTTGAAATCGATTCTAAAAACGAAGCGGAAGCAGCA 200 ||||| ||||||||||||||||||||||||||||||||||||| |||||| ||||| || Sbjct 121 TCATCAATCCCACAAGTCATCGAGCTTGAAATCGATTCTAAAACCGAAGCCGAAGCCGCG 180 Query 201 ATTCTCAAAAAGCTAAACGAATTCGTACGAAGGATCATCGTTCATAATTCGACTCCAGAT 260 |||||||| ||||| ||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 181 ATTCTCAAGAAGCTTAACGAATTCGTCCGAAGGATCATCGTTCATAATTCGACTCCAGAT 240 Query 261 TGGCTTCCTTTTGCACCTGGCTCTTCCTTTTGGGTACCTCCTCATCAGATTACGGCTACA 320 ||||| || ||||||||||||||||||||||||||||| ||||||||||||||||| || Sbjct 241 TGGCTACCCTTTGCACCTGGCTCTTCCTTTTGGGTACCACCTCATCAGATTACGGCCACC 300 Query 321 AAGATCGCCAATTTGGTCGATAAGGTGACTAATCCGTTGACGGAGGAAGAGTCTCTTTCG 380 |||||||| ||||||||||| ||||||||||||||||||||||||||||| |||||||| Sbjct 301 AAGATCGCGAATTTGGTCGACAAGGTGACTAATCCGTTGACGGAGGAAGAATCTCTTTCT 360 Query 381 CTTTCGTCTCCTTATGGTTGGCCTTGTTCCTCTTTCTTCATTCCTCCTCCAGATGGTTCC 440 || ||||||||||||||||||||||||||||||||||||||||||||||||| || ||| Sbjct 361 CTCTCGTCTCCTTATGGTTGGCCTTGTTCCTCTTTCTTCATTCCTCCTCCAGGTGATTCA 420 Query 441 TCATCTACACAAGAGGAAGAAGCTAGCGTGGAGTTGAAAATCCCGGGGAATGAGATGTTG 500 |||||||||||||||| |||||||||||||||||||||||||||||||||||||||| || Sbjct 421 TCATCTACACAAGAGGTAGAAGCTAGCGTGGAGTTGAAAATCCCGGGGAATGAGATGCTG 480 Query 501 GAAGTGAAGCTAGCACATTATCCAGATCCTATTTACTCTTTTAAACCTGAAGATGGTGAA 560 ||| | ||||||||||||||||||||||||||||||| ||||||||| ||||| ||||| Sbjct 481 GAAATCAAGCTAGCACATTATCCAGATCCTATTTACTTTTTTAAACCGGAAGACGGTGAG 540 Query 561 GAGTGA 566 |||||| Sbjct 541 GAGTGA 546 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 31985127363 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5