BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT2G19310.1 Length=613 Score E Sequences producing significant alignments: (Bits) Value Ahg480538 jgi|Araly1|480538|fgenesh2_kg.3__3239__AT2G19310.1 845 0.0 > Ahg480538 jgi|Araly1|480538|fgenesh2_kg.3__3239__AT2G19310.1 Length=580 Score = 845 bits (457), Expect = 0.0 Identities = 542/583 (93%), Gaps = 6/583 (1%) Strand=Plus/Plus Query 9 AGAATAGAGAAGAAGAAGATGTCGATGATTCCGATCAGCAATCGCCGGAGACTATCTCCC 68 ||| ||||||||||||||||||| || |||||||||||||||||||||||||| |||||| Sbjct 1 AGAGTAGAGAAGAAGAAGATGTCAATAATTCCGATCAGCAATCGCCGGAGACTCTCTCCC 60 Query 69 GGCGATAGAATCTGGGAACCATTTGAACTCATGAACACCTTTCTTGATTTCCCATCACCA 128 |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 61 AGCGACAGAATCTGGGAACCATTTGAACTCATGAACACCTTTCTTGATTTCCCATCACCA 120 Query 129 GCTCTCTTTCTTTCTCACCACTTTCCCTCACTTTCTCGAGAAATATTCCCA-CAAACTTC 187 |||||||||||||||||||||||||||||||||||||||||||||||||| || |||| Sbjct 121 TCTCTCTTTCTTTCTCACCACTTTCCCTCACTTTCTCGAGAAATATTCCCATCAT-CTTC 179 Query 188 ATCATCCACCGTCAATACGCAGCTCAATTGGACCGAGACTCCGACGGCTCACGTTTTCAA 247 |||| | |||||||| |||||||| |||||||| |||||||||||||||||||||||||| Sbjct 180 ATCAACAACCGTCAAGACGCAGCTTAATTGGACTGAGACTCCGACGGCTCACGTTTTCAA 239 Query 248 AGCGTATCTTCCGGGAGTGGATCAAGACGAAGTGATTGCGTTCGTAGATGAAGAAGGATA 307 |||||||||||||||||||| ||||||||||| ||| | ||||||||| || |||||||| Sbjct 240 AGCGTATCTTCCGGGAGTGGCTCAAGACGAAGCGATAGTGTTCGTAGACGACGAAGGATA 299 Query 308 TCTTCAGATCTGTACTGGCGACAACAAGTTCATGAGCAGATTT-AAGCTTCCTAACAACG 366 ||| ||||||||||||||||||||||||||||||||||||||| || ||||||||||||| Sbjct 300 TCTCCAGATCTGTACTGGCGACAACAAGTTCATGAGCAGATTTGAA-CTTCCTAACAACG 358 Query 367 CCTTGACGGATCAGGTCACGGCGTGGATGGAGGACGAGTTTCTTGTCGTGTTCGTTGAGA 426 |||||| ||||||||||||||||||||||||||| | |||||||||||||||||||| || Sbjct 359 CCTTGAAGGATCAGGTCACGGCGTGGATGGAGGATGGGTTTCTTGTCGTGTTCGTTGCGA 418 Query 427 AAGATGCTTCTTCGTCGCCGCCACAGCTGCCGGAGATTGAGGAGAATCGTAACGTGAGAG 486 |||||| |||||| |||||||||| ||| |||||||| |||||||||||||||||||||| Sbjct 419 AAGATGGTTCTTCTTCGCCGCCACCGCTACCGGAGATAGAGGAGAATCGTAACGTGAGAG 478 Query 487 TTGTGGAAATCACCGGCGATGATGATTAATTAAGTGTTACATGTTGTCGAGATATATGTG 546 |||||||||||||||||||||||||||||| |||||||| ||||||||||||||| | || Sbjct 479 TTGTGGAAATCACCGGCGATGATGATTAATCAAGTGTTAAATGTTGTCGAGATATGTATG 538 Query 547 AATTAAAGGGAAACTTAAAAGTTT-AGTGTACTAAATGAACAA 588 |||||||| |||||||| |||||| | |||||||||||||||| Sbjct 539 AATTAAAGTGAAACTTACAAGTTTTA-TGTACTAAATGAACAA 580 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 22416275196 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5