BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT2G19810.1 Length=1546 Score E Sequences producing significant alignments: (Bits) Value Ahg480488 jgi|Araly1|480488|fgenesh2_kg.3__3189__AT2G19810.1 1666 0.0 Ahg491837 jgi|Araly1|491837|fgenesh2_kg.7__1270__AT4G29190.1 678 0.0 > Ahg480488 jgi|Araly1|480488|fgenesh2_kg.3__3189__AT2G19810.1 Length=1442 Score = 1666 bits (902), Expect = 0.0 Identities = 1043/1110 (94%), Gaps = 14/1110 (1%) Strand=Plus/Plus Query 100 TaaaaaaaTGATGATCGGAGAATCTCATCGTGGTTTTAATCCAACGGTTCATATTCC-TC 158 |||||||||||||||||||||||||||||||||||||||||| |||||||||||||| | Sbjct 67 TAAAAAAATGATGATCGGAGAATCTCATCGTGGTTTTAATCCTACGGTTCATATTCCAT- 125 Query 159 CATGGCCACTTTCTGAAGATCTAACGGTGTCTGATATTTACGGAAGTCCAGACGGAGGAA 218 |||||||||| ||||||||| |||||| ||| ||| |||||||||||||||||||||||| Sbjct 126 CATGGCCACTGTCTGAAGATTTAACGGCGTCAGATGTTTACGGAAGTCCAGACGGAGGAA 185 Query 219 GTAGTATGATGGAAGCTTTGGCTGAGTTACAACGTTATCTTCCGTCAAACGAACCGGATC 278 |||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||| Sbjct 186 GTAGTATGATGGAAGCTTTGGCTGCGTTACAACGTTATCTTCCGTCTAACGAACCGGATC 245 Query 279 CGGATTCAGATCCGGATCTCTCGGGTCCGGATTCACCAATCGATGCTTATACATGCGATC 338 ||||||| ||||||||||||||||||||||||||||| |||||||||||| | || |||| Sbjct 246 CGGATTCTGATCCGGATCTCTCGGGTCCGGATTCACCCATCGATGCTTATTCGTGTGATC 305 Query 339 ATTTTCGGATGTATGAGTTTAAAGTGAGACGTTGTGCTCGTGGCCGGAGCCATGATTGGA 398 |||||||||||||||||||||||||||||||||| |||||||| ||||| |||||||||| Sbjct 306 ATTTTCGGATGTATGAGTTTAAAGTGAGACGTTGCGCTCGTGGTCGGAGTCATGATTGGA 365 Query 399 CGGAGTGTCCTTACGCTCATCCCGGAGAAAAAGCTCGCCGTCGTGATCCGAGGAAGTTTC 458 ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 366 CGGAGTGTCCTTATGCTCATCCCGGAGAAAAAGCTCGCCGTCGTGATCCGAGGAAGTTTC 425 Query 459 ATTACTCCGGTACGGCGTGTCCTGAGTTTCGTAAAGGTTGTTGCAAGAGAGGAGACGCAT 518 |||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||| | Sbjct 426 ATTATTCCGGTACGGCGTGTCCTGAGTTTCGTAAAGGTGGTTGCAAGAGAGGAGACGCGT 485 Query 519 GTGAGTTTTCTCATGGTGTTTTTGAGTGTTGGCTTCACCCGGCGCGTTACCGGACTCAGC 578 ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct 486 GTGAGTTTTCTCATGGTGTTTTTGAGTGTTGGCTTCATCCGGCGCGTTACCGGACTCAGC 545 Query 579 CGTGTAAAGACGGTGGTAACTGTCGCCGTCGTGTTTGTTTCTTTGCTCATTCGCCGGATC 638 ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 546 CGTGTAAAGACGGTGGTAACTGTCGCCGTCGTGTTTGTTTCTTCGCTCATTCGCCGGATC 605 Query 639 AGATTAGGGTTTTGCCTAATCAAAGCCCTGATCGTGTTGATTCGTTCGACGTTTTGTCTC 698 || ||||||||||||||| |||||||||||||||||||||||| ||||||| |||||||| Sbjct 606 AGCTTAGGGTTTTGCCTAGTCAAAGCCCTGATCGTGTTGATTCATTCGACGGTTTGTCTC 665 Query 699 CTACGATTCGTAGAGCGTTTCAGTTTTCGATTTCTCCGTCGTCTAACTCGCCGCCGGTGA 758 | |||||||||||||||||||||| ||||||| |||||||||||||| |||||||||| Sbjct 666 C---GATTCGTAGAGCGTTTCAGTTTACGATTTCGCCGTCGTCTAACTCCCCGCCGGTGA 722 Query 759 GTCCACGAGGTGACTCGGACTCGTCGT-GT-TCGTTACTGAGTCGTTCACTCGGGTCTAA 816 |||| ||||||||||||||||||||| || || | |||||||||||||||||| ||||| Sbjct 723 GTCCTCGAGGTGACTCGGACTCGTCGCCGTCTC-T-ACTGAGTCGTTCACTCGGATCTAA 780 Query 817 TCTGGGAAACGACGTCGTTGCGTCTCTCAGGAATCTGCAACTTAATAAAGTGAAGTCTTC 876 | |||||||||||||||||||||| || ||||||||||| |||| ||||||||||||| | Sbjct 781 TTTGGGAAACGACGTCGTTGCGTCCCTGAGGAATCTGCAGCTTAGTAAAGTGAAGTCT-C 839 Query 877 TCTTTCGTCGTCATACAACAATCAAATCGGAGGATACGGATCCGGATTCGGGTCGCCTCG 936 | || | ||||| ||||||||| ||||||||||||||||||| || |||||||||||||| Sbjct 840 T-TT-CTTCGTCGTACAACAATGAAATCGGAGGATACGGATCTGGGTTCGGGTCGCCTCG 897 Query 937 TGGATCGGTTTTGGGTCCTGGTTTCCGTAGCTTACCAACTACACCGACCCGACCTGGTTT 996 |||||||||||||||||||||||| || ||||||||||| |||||||||||||| || || Sbjct 898 TGGATCGGTTTTGGGTCCTGGTTTTCGGAGCTTACCAACAACACCGACCCGACCCGGGTT 957 Query 997 TATGAACATTTGGGAGAATGGCTTGGAGGAAGAACCGGCGATGGAACGGGTCGAGTCGGG 1056 ||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||| Sbjct 958 TATGAACATTTGGGAAAATGGTTTGGAGGAAGAACCGGCGATGGAACGGGTCGAGTCGGG 1017 Query 1057 TCGTGAACTGCGAGCGCAGCTGTTCGAGAAGCTGAGCAAAGAGAATTGCATGGGTCG-GA 1115 ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| | Sbjct 1018 TCGTGAACTGCGAGCGCAGCTGTTCCAGAAGCTGAGCAAAGAGAATTGCATGGGTCGTG- 1076 Query 1116 TTGAACCGGATCCGGATCAGGGAGCGGGTGATACTCCTGATGTCGGGTGGGTCTCTGACT 1175 |||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 1077 TTGACCCGGATCCGGATCAGGGAGCGGGTGATGCTCCTGATGTCGGGTGGGTCTCTGACT 1136 Query 1176 TGGTTATGTGATTTGAACCGGATTCGTAAA 1205 |||||||||||||| ||||||||||||||| Sbjct 1137 TGGTTATGTGATTTTAACCGGATTCGTAAA 1166 Score = 276 bits (149), Expect = 4e-73 Identities = 199/222 (90%), Gaps = 8/222 (4%) Strand=Plus/Plus Query 1329 TTTATTATTTCCTAATTTCGTATAATCTCTGTTCCATAATCGATGATTCGAGGGAG---- 1384 |||||||||||||||||||||||||||||| || |||||||||||||| |||||| Sbjct 1225 TTTATTATTTCCTAATTTCGTATAATCTCTATTTTATAATCGATGATTCCAGGGAGATTT 1284 Query 1385 ATTCCTCAGTGTATAGGAGTTGCTTAGGATTTTTCATTATGATGGATTCACTAATATTGA 1444 ||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 1285 ATTTCTCAGTGTATAGGAGTTGCTTAGGATTTTTCATTATGATGGATTCACTAATAATGA 1344 Query 1445 TATTGTTGGTTATTGttttttttATATATTATGATGTAAGATGCAAGTCGCAATGTAATT 1504 ||||||||||| ||| |||| |||| | ||||||| ||||||| || |||||||||| Sbjct 1345 TATTGTTGGTTTTTGGTTTTG--ATAT-T-ATGATGTTCGATGCAAATCTCAATGTAATT 1400 Query 1505 ATTAAATATCTTATGAATGAAATGAGAATGTAAATTATTTAT 1546 ||||||||||| |||||||||||||| ||||||||||||||| Sbjct 1401 ATTAAATATCTAATGAATGAAATGAGGATGTAAATTATTTAT 1442 > Ahg491837 jgi|Araly1|491837|fgenesh2_kg.7__1270__AT4G29190.1 Length=1307 Score = 678 bits (367), Expect = 0.0 Identities = 881/1119 (79%), Gaps = 76/1119 (7%) Strand=Plus/Plus Query 100 Taaa-aaaaTGATGATCGGAGAATCTCATCGTGGTTTTAATCCAACGGTTCATATTCCTC 158 |||| || ||||||||||||||| ||| | || || |||| || ||| | || |||| Sbjct 2 TAAAGAAGATGATGATCGGAGAAACTC-GC-CGGACTT-ATCCTACTGTTGAAATACCTC 58 Query 159 CATGGCCACTTTCTGAAGATCTAACGGTGTCTGA----TATT-TAC-G-GAAGTCCAGAC 211 |||||||| |||||||||| || |||| ||| || | || | | | || | || | Sbjct 59 CATGGCCAGTTTCTGAAGAGCTTACGGCGTCGGAGTTTTTTTCTCCGGTGATGAATAGTC 118 Query 212 GGAGGA-AGTAGTATGATGGAAGCTTTGGCTGAGTTACAACGTTATCTTCCGTCAAACGA 270 | || |||| ||| | ||||||||||| | ||| || |||||||||||||| ||||| Sbjct 119 -CA-GATTGTAGCATGCTTGAAGCTTTGGCGGCGTTGCAGCGTTATCTTCCGTCTAACGA 176 Query 271 ACCGGATCCGGATTCAGATCCGGATCTCTCGGGTCCGGATTCACCAATCGATGCTTA-TA 329 ||||||||||||||| || |||||| | | |||||| |||||||||||||||||||| | Sbjct 177 ACCGGATCCGGATTCTGACCCGGATTTATTGGGTCCTGATTCACCAATCGATGCTTACT- 235 Query 330 CATGCGATCATTTTCGGATGTATGAGTTT-AAAGT--GAGACGTTGTGCTCGTGGCCGGA 386 |||| || ||||| || ||||| || ||| ||||| | || | |||||||||||||||| Sbjct 236 CATGTGACCATTTCCGTATGTACGA-TTTCAAAGTCCG-GA-GGTGTGCTCGTGGCCGGA 292 Query 387 GCCATGATTGGACGGAGTGTCCTTACGCTCATCCCGGAGAAAAAGCTCGCCGTCGTGATC 446 | |||||||||||||||||||| ||||| ||||||||||||||||||||||| | |||| Sbjct 293 GTCATGATTGGACGGAGTGTCCGTACGCACATCCCGGAGAAAAAGCTCGCCGGAGAGATC 352 Query 447 CGAGGAAGTTTCATTACTCCGGTACGGCGTGTCCTGAGTTTCGTAAAGGTTGTTGCAAGA 506 ||||||||| ||||||||||||||||| |||||||| ||||| |||||| ||||||||| Sbjct 353 CGAGGAAGTACCATTACTCCGGTACGGCTTGTCCTGATTTTCGCAAAGGTGGTTGCAAGA 412 Query 507 GAGGAGACGCATGTGAGTTTTCTCATGGTGTTTTTGAGTGTTGGCTTCACCCGGCGCGTT 566 ||| || | |||||||| ||||||| ||||| |||||||||||||| || || |||| Sbjct 413 AAGGTGATTCTTGTGAGTTCGCTCATGGAGTTTTCGAGTGTTGGCTTCATCCAGCTCGTT 472 Query 567 ACCGGACTCAGCCGTGTAAAGACGGTGGTAACTGTCGCCGTCGTGTTTGTTTCTTTGCTC 626 |||||||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 473 ACCGGACTCAGCCGTGTAAAGACGGTGGTAACTGTCGCCGGAAAGTTTGTTTCTTTGCTC 532 Query 627 ATTCGCCGGATCAGATT-AGGGTTTTGCCTAATCAAAGCCCTGATCGTGTTGATTCGTTC 685 |||| ||||||||| || ||| |||| || | || ||||| ||||| |||||||| ||| Sbjct 533 ATTCACCGGATCAG-TTGAGGTTTTTACCGAGTCGGAGCCCCGATCGGGTTGATTCTTTC 591 Query 686 GACGTTTTGTCTCCTACGATTCGT---AGAGCGTTTCAGTTTTCGATTTCTCCG-TCGTC 741 ||||||| |||||| ||||||| |||||||||||| | |||||||| ||| | || Sbjct 592 GACGTTTCGTCTCC---GATTCGTGCTAGAGCGTTTCAGCTCTCGATTTCGCCGGTT-TC 647 Query 742 TAACTCGCCGCCGGTGAGTCCACGAGGTGACTCGGACTCGTC---G-TGT-TCGTT-ACT 795 | ||||||||| |||||||| ||| ||||||||| || || | || || | ||| Sbjct 648 TGGTTCGCCGCCGATGAGTCCAAGAGCTGACTCGGAGTCTTCTCCGATGACTCAATCACT 707 Query 796 GAGTCGTTCACTCGGGTCTAATCTGGG-AAACGACGTCGTTGCGTC-TCTCAGGAATCTG 853 ||||| || ||||||||| | | | ||||||||||||| | || | | ||||| || Sbjct 708 TAGTCGATCTCTCGGGTCTTGT-TCGATAAACGACGTCGTTCCTTCGTTT-AGGAA-CTT 764 Query 854 -CAACTTAATAAAGTGAAGTCTTCTCTTTCGTCGTCATACAACAATCAAATCGGAGGATA 912 || ||||||| || || || | | | | | ||||| | ||||| | | | Sbjct 765 ACAGTTTAATAAGGTAAAATCAT-T-T--C--C-TCATA-A-CAATCCTTT---A---T- 808 Query 913 CGGATCCGGATTCGGGTCGCCTCGTGGATCGGTTTTGGGTCCTGG-TTTCCGTAGCTTAC 971 || |||||||||||||| ||||||||| ||||||||||||| |||| || || | Sbjct 809 ----TC-GGATTCGGGTCGCCCCGTGGATCGATTTTGGGTCCTGGGTTTCAGTCTCTG-C 862 Query 972 CAACTACACCGACCCGACCTGGTTTTATGAACATTTGGGAGAATGGCTTGGAGGAAGAAC 1031 | || |||||||||||||| || | || | |||||||| |||| || |||||||| | Sbjct 863 CTACAACACCGACCCGACCCGGAAATCTGGATATTTGGGACTATGGGTTAGAGGAAGAGC 922 Query 1032 CGGCGATGGAACGGGTCG---AGTCGGGTCGTGAACTGCGAGCGCAGCTGTTCGAGAAGC 1088 | | ||||| ||||||| ||||||||||||| || |||| || || |||||| | Sbjct 923 CTGTAATGGAGCGGGTCGTTGAGTCGGGTCGTGAGCTACGAGAAAAGATGCGCGAGAAAC 982 Query 1089 TGAGCA-AAG-AGAATTGCATGGGTCGGATTGAACCGGATCCGGATCAGGGAG-CGGGTG 1145 | | || ||| |||||||| ||| |||| |||| ||||||||||||||| || |||||| Sbjct 983 T-A-CACAAGGAGAATTGCTTGGATCGGGTTGACCCGGATCCGGATCAGA-AGTCGGGTG 1039 Query 1146 ATACTCCTGATGTCGGGTGGGTCTCTGACTTGGTTATGT 1184 || ||||||||||||||||||| |||||| || | |||| Sbjct 1040 ATGCTCCTGATGTCGGGTGGGTATCTGACCTGCTGATGT 1078 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 57897172400 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5