BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT2G19930.1 Length=3127 Score E Sequences producing significant alignments: (Bits) Value Ahg480480 jgi|Araly1|480480|fgenesh2_kg.3__3181__AT2G19930.1 4678 0.0 Ahg319567 jgi|Araly1|319567|fgenesh1_pm.C_scaffold_3002583 835 0.0 Ahg931400 jgi|Araly1|931400|scaffold_303857.1 466 4e-130 > Ahg480480 jgi|Araly1|480480|fgenesh2_kg.3__3181__AT2G19930.1 Length=3107 Score = 4678 bits (2533), Expect = 0.0 Identities = 2914/3092 (94%), Gaps = 49/3092 (2%) Strand=Plus/Plus Query 10 GCTTCTTCGAGGAT-AAGGATCGCTCTTTCGGGTCGGATTGAAACAGCTTTAGAGAATAT 68 |||||| ||||| | ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 22 GCTTCTACGAGG-TCAAGGATCGCTCTTTCGGGTCGGATTGAAACAGCTTTAGAGAATAT 80 Query 69 CTACAGAAAACACAATCTTACTCCGATTAATGATGAGACGAGACAGAGACTGTCTTCGAT 128 |||||||||| |||||||||||||||||||||||||||||||||||||||||||| || Sbjct 81 CTACAGAAAATTTAATCTTACTCCGATTAATGATGAGACGAGACAGAGACTGTCTTCCAT 140 Query 129 TCCTGAGAATTTGGGTTTTGAGTTGGTCAGGAAAGTTTTTAGTTTGCAGGCTGGTTTGAT 188 ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 141 TCCTGAGAATTTGGGTTTTGAGTTGGTCAGGAACGTTTTTAGTTTGCAGGCTGGTTTGAT 200 Query 189 ATACAACCTCGACAGCTTCATCGTTTCTAAGGTTAACCAAGCCGTTAGTTTTACTGGCTA 248 |||||| ||||||||||||||||||||||| ||||||||| |||||| |||||||||||| Sbjct 201 ATACAATCTCGACAGCTTCATCGTTTCTAAAGTTAACCAATCCGTTAATTTTACTGGCTA 260 Query 249 T---C--C--A---CA-----G---CCGGCGAACTCTCTTAGCCCCTCTGGAAGACACGT 290 | | | | || | ||||||||||||| ||| ||||||||||||||||| Sbjct 261 TCCACGGCTGAGCTCAGGTGTGTCTCCGGCGAACTCTCGTAGTCCCTCTGGAAGACACGT 320 Query 291 GTCCAGGGTTCTTCAAGAAGAGATGTCTGTTGATTCTGATGCTCCTTCTCCTAAGTCTTT 350 || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 321 GTGCAGGGTTCTTCAAGAAGAGATGTCTGTTGATTCTGATGCTCCTTCTCCTAAGTCTTT 380 Query 351 GAAAAGTGAAGACAAA-GGAGGATCTCTGCACATTCCCCAGCTGGTAGCTTTGGGTGAAC 409 |||||||||||| ||| |||||||||||||||||||| |||||||||||||||||||||| Sbjct 381 GAAAAGTGAAGA-AAATGGAGGATCTCTGCACATTCCACAGCTGGTAGCTTTGGGTGAAC 439 Query 410 TTGAATTTAAGAAGGTGTTTTTGTTACTTAGCTATATTCCAGGGCAACATGTGGGCCAGG 469 ||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||| Sbjct 440 TTGAATTTAAGAAGGCGTTTTTGTTACTTAGCTATATTCCAGGGCAACAACTGGGCCAGG 499 Query 470 TTATAACTGCTGATGAGATTAGACTGTGGAAAGATTTGCCAATGGTTGAATATGAAGCAG 529 ||| |||||||||||||||| |||| |||||||||||||||||||||| ||||||||||| Sbjct 500 TTACAACTGCTGATGAGATTCGACTATGGAAAGATTTGCCAATGGTTGCATATGAAGCAG 559 Query 530 CGGTTTGGGACCGCTTGGGCCGGCATTATTGTCCCCA-AAAGGACCGAAGAATGTTGCAA 588 | ||||||||||| |||||||||||||||||||| || | | ||||||||| |||||||| Sbjct 560 CCGTTTGGGACCGTTTGGGCCGGCATTATTGTCCTCAGACA-GACCGAAGAGTGTTGCAA 618 Query 589 TGGGATAGCGGGAAGACCCATTACTATCAGTGTAATGTTGCTCCCAATGGTAGCTACACA 648 |||||||| || ||||||||||||||||||||| ||||||||||| |||||||||||||| Sbjct 619 TGGGATAGTGGCAAGACCCATTACTATCAGTGTCATGTTGCTCCCGATGGTAGCTACACA 678 Query 649 TTCAAGGTTCTTTCAGCTCTTCAAGGCCCTCTTCTTGAACACACTGGAACACACTTGCAC 708 ||||||| | | ||| |||||||||||||||||||||||||||||| Sbjct 679 TTCAAGG--------G-----C----CCC-CTTCTTGAACACACTGGAACACACTTGCAC 720 Query 709 AAGGTCTTGGGTGATGATAATGTTTTAACCGTCAAATTCGCGGATGTCCAGAAAAGTTCA 768 ||||||||||||||||| ||||||||||| ||||||||||||||||||| ||||| ||| Sbjct 721 AAGGTCTTGGGTGATGAAAATGTTTTAACTGTCAAATTCGCGGATGTCCCGAAAAACTCA 780 Query 769 TCAACATATAGCATTGACCATTACTTTACATACAAAGGGATTGCCAAGAACGGTATCATG 828 ||||||||||||| ||||| ||| ||||||||||||| ||||||||||||||||||||| Sbjct 781 TCAACATATAGCAATGACCGTTATTTTACATACAAAGAAATTGCCAAGAACGGTATCATG 840 Query 829 ATTGGTTTACGTCGTTATCAATTTTTTGTTTTCAAAGATGGAGGAAAAGAGGAAAAGAAG 888 |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 841 ATTGGTTTACGTCGTTATCAGTTTTTTGTTTTCAAAGATGGAGGAAAAGAGGAAAAGAAG 900 Query 889 AAAGATCTTTCTACAAAGAAAGTGAAATGCTACTTTATACGCACGGACTCAACAGCTTTT 948 |||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||| | Sbjct 901 AAAGATCTTTCTACAAAGAAAGTGAAATGCTACTTTATACGCACGGGCTCTACAGCTTCT 960 Query 949 TATGATATGCAAAATCCCTATATTTTAACCGGAAAGTCAATTTATGAAGCTCGTATGCAT 1008 | ||||||| |||||||||||||||| || |||||||||||| | ||||||||||||||| Sbjct 961 TGTGATATGGAAAATCCCTATATTTTTACTGGAAAGTCAATTCACGAAGCTCGTATGCAT 1020 Query 1009 TTTATGCACGTGCATCGAGCACCAACTTTGGCGAATTATATGGCAAGGTTTTCCTTAATT 1068 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1021 TTTATGCACGTGCATCGAGCACCAACTTTGGCGAATTATATGGCAAGGTTTTCCTTAATT 1080 Query 1069 CTGTCAAAGACTAAAACGCTTGAAGTTGACATGACTGGGATTACCTTTGATCAAATTGAT 1128 || ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 1081 CTCTCAAAGACTAAAACGCTTGAAGTTGACATGACTGGGATTACCTTTGATCCAATTGAT 1140 Query 1129 GATATACACTGCCATGATCAAGATGGGAAAGATGTTCTTGACAAGAACAAAAAACCTTGC 1188 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1141 GATATACACTGCCATGATCAAGATGGGAAAGATGTTCTTGACAAGAACAAAAAACCTTGT 1200 Query 1189 ATACATTCAGATGGAACTGGCTACATCTCTGAGGACCTGGCTCGGATGTGTCCCCTAAAT 1248 |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 1201 ATACATTCAGATGGAACTGGCTACATCTCTGAGGACCTTGCTCGGATGTGTCCCCTAAAT 1260 Query 1249 ATATTTAAAGGGAAATGTCTCAGAAGTGAAAGTATTCAGGAAGCATGTTACCAAGACCCG 1308 ||||||||||||||||||||||||||||||| |||||||||||| ||| ||||||||||| Sbjct 1261 ATATTTAAAGGGAAATGTCTCAGAAGTGAAAATATTCAGGAAGCTTGTAACCAAGACCCG 1320 Query 1309 CCTCTTTTGATCCAGTTTCGGATGTTTTATGATGGTTATGCTGTTAAGGGAACTTTTCTC 1368 ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 1321 CCTCTTTTGATCCAGTTTCGGATGTTTTATGATGGCTATGCTGTTAAGGGAACTTTTCTC 1380 Query 1369 TTAAACAAGAAACTTTGTCCTCGGACTGTCCAGGTTCGACCTTCGATGATCAAGGTGTCT 1428 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1381 TTAAACAAGAAACTTTGTCCTCGGACTGTCCAGGTTCGACCTTCGATGATCAAGGTGTCT 1440 Query 1429 AAAGATCCATCCTTGTCCAATTTTAGCACCTTTAACGCCTTGGAAGTAGTAACCACAAGT 1488 |||||||| || ||||| |||||||||||||||||||| ||||| |||||||| |||||| Sbjct 1441 AAAGATCCCTCATTGTCAAATTTTAGCACCTTTAACGCTTTGGAGGTAGTAACTACAAGT 1500 Query 1489 AATCCACCAAAAAGAACAAAGCTATCAAAAAATTTGGTTGCGCTGCTTAGCTATGGAGGA 1548 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1501 AATCCACCAAGAAGAACAAAGCTATCAAAAAATTTGGTTGCGCTGCTTAGCTATGGAGGA 1560 Query 1549 ATCCCTAATGAATTCTTTTTGGATATATTGCTCAACACGTTGGAAGAGTCTAAAAGCATA 1608 ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 1561 ATCCCTAATGAATTCTTTTTGGATATATTGCTCAACACGCTGGAAGAGTCTAAAAGCATA 1620 Query 1609 TTCTACAACAAACGTGCTGCACTTAATGCTGCTCTTAATTATGGGGAAATGGACGACCAG 1668 ||||||||||||| |||||| ||||||| ||||||||||||||||||||||||||||||| Sbjct 1621 TTCTACAACAAACATGCTGCGCTTAATGTTGCTCTTAATTATGGGGAAATGGACGACCAG 1680 Query 1669 AACGCCGCACAGATGATATTGGTTGGTATCCCCCTTGATGAACCACACTTGAAGAATTAT 1728 |||||||||||||||||||||||||||||||||||||| |||||||||||||||||| || Sbjct 1681 AACGCCGCACAGATGATATTGGTTGGTATCCCCCTTGACGAACCACACTTGAAGAATCAT 1740 Query 1729 CTGTCTATACTTTTAAAGACAGAGAAAAATGATCTCAAAGCAGGAAAACTTCCTGTGACC 1788 |||||||| ||| ||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 1741 CTGTCTATTCTTCTAAAGACAGAGAAAAATGATCTCAAAGCAGGAAGACTTCCTGTGACC 1800 Query 1789 GAATCATACTATCTTATGGGAACAGTGGATCCCACCGGAGCGCTAAAGGAAGATGAAGTC 1848 |||||||||||||| ||||| |||||||||||||| |||| ||||||||||||||||||| Sbjct 1801 GAATCATACTATCTCATGGGGACAGTGGATCCCACTGGAGAGCTAAAGGAAGATGAAGTC 1860 Query 1849 TGTGTAATTCTTGAGTCTGGGCAAATTTCGGGAGAAGTTTTAGTGTATAGAAATCCTGGA 1908 |||||||| ||||||||||||||||||||||||||||| ||||| ||||||||||||||| Sbjct 1861 TGTGTAATCCTTGAGTCTGGGCAAATTTCGGGAGAAGTGTTAGTTTATAGAAATCCTGGA 1920 Query 1909 TTACATTTTGGAGACATACATATTCTTAAGGCCACATATGTCAAGGCCTTGGAAGAGTAT 1968 |||||||||||||||||||||||||| ||||| |||||||| |||||||||||||||||| Sbjct 1921 TTACATTTTGGAGACATACATATTCTCAAGGCTACATATGTTAAGGCCTTGGAAGAGTAT 1980 Query 1969 GTTGGAAATTCCAAGTTTGCTGTGTTCTTCCCTCAGAAAGGTCCAAGATCCTTGGGGGAC 2028 |||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||| Sbjct 1981 GTTGGAAATTCCAAGTATGCTGTGTTCTTCCCTCAGAAAGGTCCAAGATCCTTGGGCGAC 2040 Query 2029 GAGATTGCAGGTGGTGACTTTGATGGTGATATGTATTTCATATCAAGAAACCCTGAGCTA 2088 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2041 GAGATTGCAGGTGGTGACTTTGATGGTGATATGTATTTCATATCAAGAAACCCTGAGCTG 2100 Query 2089 CTTGAAAACTTCAAACCAAGTGAACCGTGGGTGAGTTTGACTCCTCCCAGTAAAAGTAAC 2148 |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2101 CTTGAACACTTCAAACCAAGTGAACCGTGGGTGAGTTTGACTCCTCCCAGTAAAAGTAAC 2160 Query 2149 TCTGGTAGAGCGCCAAGCCAGCTTTCCCCAGAAGAGTTGGAAGAAGAACTTTTCGAAATG 2208 |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 2161 TCTGGTAGAGCGCCAAGCCAGCTTTCACCAGAAGAGTTGGAAGAAGAACTTTTCGAAATG 2220 Query 2209 TTCCTGACTGCAGGATTTCATGCCAGCAATGTTATAGGGATAGCTGCAGATAGCTGGTTA 2268 ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2221 TTCCTGAAGGCAGGATTTCATGCCAGCAATGTTATAGGGATAGCTGCAGATAGCTGGTTA 2280 Query 2269 ACAATAATGGACCGCTTCCTCATACTAGGAGATGACAGGGCTGAGGAAAAAGCTGAAATG 2328 |||||||||||||||||||| |||||||||||||| || ||||||||||||||||||||| Sbjct 2281 ACAATAATGGACCGCTTCCTAATACTAGGAGATGAGAGAGCTGAGGAAAAAGCTGAAATG 2340 Query 2329 AAGAAGAAGATGCTTGAGCTGATTGATATATACTATGATGCTCTTGATGCACCAAAGAAA 2388 |||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 2341 AAGAAGAAAATGCTAAAGCTGATTGATATATACTATGATGCTCTTGATGCACCAAAGAAA 2400 Query 2389 GGGGATAAAGTCTACCTCCCAAACAAGCTGAAGCCTGACATCTTTCCACATTACATGGAG 2448 |||||||| ||||| || |||||| |||||| ||| |||||||||||||||||||||||| Sbjct 2401 GGGGATAAGGTCTATCTTCCAAACGAGCTGAGGCCCGACATCTTTCCACATTACATGGAG 2460 Query 2449 CGGGATAAAAAATTCCAGTCCACTTCTATTCTTGGATTAATCTTTGACTTTGTTAAATCA 2508 ||||| ||||| ||| ||||||||||||||||||||||||||| |||||||||||||||| Sbjct 2461 CGGGAGAAAAAGTTCAAGTCCACTTCTATTCTTGGATTAATCTATGACTTTGTTAAATCA 2520 Query 2509 CAGACAACAGAGGAACCCTCACCATCATCTGAGATCAGTAAACTCCCGTGTTTCGAAGAT 2568 |||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||| Sbjct 2521 CAGACAACAGAGGAACCCACACCATCATCTGAGATCAGTAAACTCCCCTGTTTCGAAGAT 2580 Query 2569 GAGCCGGTCTCCGAGTTTCATATGCAGAAATGTAGACTGTGGTATGATAATTACAGAACT 2628 ||||||||||| |||||||||||| |||||||||||| |||||||||||||||||||||| Sbjct 2581 GAGCCGGTCTCAGAGTTTCATATGGAGAAATGTAGACGGTGGTATGATAATTACAGAACT 2640 Query 2629 GAGATGACACAGGCGATGAAGACTGATAAGGATGAATCAGCCAATGAAGTTATTCAGAGA 2688 |||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 2641 GAGATGACCCAGGCGATGAAAACTGATAAGGATGAATCAGCCAATGAAGTTATTCAGAGA 2700 Query 2689 TACAAGCAGGAGTTCTATGGCGCTGCAGGGTTTGAAGACAGCAAGAAAAGTCTGGAAGAA 2748 |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 2701 TACAAGCAGGAGTTCTATGGTGCTGCAGGGTTTGAAGACAGCAAGAAAAGTCTGGAAGAA 2760 Query 2749 CTCTATCCGCAAGCTCTCGCACTCTACAAGATCGTTTACGATTATGCCATTCATGCAGGT 2808 |||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||| Sbjct 2761 CTCTATCCGCAAGCCCTCGCACTGTACAAGATCGTTTACGATTATGCCATTCATGCAGGT 2820 Query 2809 GTTTCGAAATGCAGGTTTGTCTGGAAGGTAGCAGGACCGGTACTGTGCAGATTCTATCTA 2868 ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2821 GTTTCGAAATGTGGGTTTGTCTGGAAGGTAGCAGGACCGGTACTGTGCAGATTCTATCTA 2880 Query 2869 AAT-AAGAAAATGCAGGAGAAATGTTTAGTGTGTGCACCATCTGTGCTTAAAGAGCTTTG 2927 | | ||||||||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 2881 A-TGAAGAAAATGCAGGAGAAATCTTTAGTGTGTGCACCATCTGTGCTTAAAGAGCTTTG 2939 Query 2928 GGGTTGAAGAATACAAGCCTTTGTTGTTGCTACA-TGTCTAATAATAAGAAGCGTATGAG 2986 ||||||||||||||||||||||||||||||| || |||||||||| |||||||||||| Sbjct 2940 GGGTTGAAGAATACAAGCCTTTGTTGTTGCTTCAGTGTCTAATAA---GAAGCGTATGAG 2996 Query 2987 GCAAGTAAGTTAACTAATAGGTGCCAAGATGTGTGTGTTGTAGTGCCTTTTGGTTTGGTT 3046 |||||||| ||||||||||| |||||||||||||| ||||||||||||| ||||||||| Sbjct 2997 GCAAGTAACTTAACTAATAGAAGCCAAGATGTGTGTATTGTAGTGCCTTT-GGTTTGGTT 3055 Query 3047 TTAATGTAGATTTCTCCTCTGGTGAATATTTT 3078 ||||||||||||| | |||| |||||||||| Sbjct 3056 TTAATGTAGATTTGTTCTCTAATGAATATTTT 3087 > Ahg319567 jgi|Araly1|319567|fgenesh1_pm.C_scaffold_3002583 Length=2682 Score = 835 bits (452), Expect = 0.0 Identities = 1055/1331 (79%), Gaps = 102/1331 (8%) Strand=Plus/Plus Query 308 AAGAGATGTCTGTTGATTCTGATGCTCCTTCTCCTAAG-TCTTTGAAAAGTGAAGACAA- 365 ||||| ||||| ||||| ||| | ||| ||||||||| || |||| ||| || || || Sbjct 320 AAGAGGTGTCTCTTGATGGTGAAGATCCGTCTCCTAAGTTC-TTGAGAAGAGATGA-AAC 377 Query 366 AGGAGGATCT-CTGCACATTCC-CCAGCTGGTAGCTTTGGGTGAACTTGAATTTAAGAAG 423 ||| || || | |||||||| || ||| |||||||||||||||||||||||||||||| Sbjct 378 TGGAAGAACTAAT-CACATTCCTCC-GCTAGTAGCTTTGGGTGAACTTGAATTTAAGAAG 435 Query 424 GTG-TT-T-TTG-TTA-C--T-T---AGCT-AT-ATTCCAG-GGCA--ACAT--GTGGGC 465 | | || | ||| ||| | | | || | || || | || | || |||| Sbjct 436 GCGTTTCTGTTGCTTACCTATCTCGGAGGTGATCGTTTTTGTTACAGGAAATCCCTGGGT 495 Query 466 CAGGTTATAACTGCTGATGAGATTAGACTGTGGAAAGATTTGCCAATGGTTGAATATG-A 524 |||||||| ||| ||||||||| |||| ||||| |||||||||||||||| ||||| | Sbjct 496 GAGGTTATATCTGGTGATGAGATCAGACAATGGAAGGATTTGCCAATGGTTGCATATGAA 555 Query 525 AGCAGCGGTTTGGGACCGCTTGGGCCGGCATTA-TTGTCCCCAAAAGGACCGAAGAA--T 581 || || | || | | || || | ||| |||||| || | ||||| | Sbjct 556 AG-TGCAG--TGTG---G-TT-------CA--AGTTG-GGCCAAAACGAGCAAAGAATCT 598 Query 582 -G-TTGCAATGGGATAGCGGGAAGACCCATTACTATCAGTGTAATGTTGCTCCCAATGGT 639 | ||| ||| ||||||||||||||| ||||||||||| ||| ||||| ||||| ||||| Sbjct 599 CGCTTG-AATCGGATAGCGGGAAGACTCATTACTATCAATGTCATGTTACTCCCGATGGT 657 Query 640 AGCTACACATTCAAGGTTCTTTCAGCTCTTCAAGGCCCTCTTCTTGA-ACACACTGGAAC 698 || |||| ||| |||| | || | ||| || || | |||||||||| Sbjct 658 AGTTACAGATTTAAGG--------G---TT--A-----TCTACTGGAGA-ACACTGGAAC 698 Query 699 ACACTTGCACAAGGTCTTGGGTGATGATAATGTTTTAACCGTCAAATTCG--CGGATGTC 756 |||| |||||||||| |||||||||||||||||||| ||||||||||| | | || | Sbjct 699 ACACCTGCACAAGGTTTTGGGTGATGATAATGTTTTGACCGTCAAATTTGATC-AAT-T- 755 Query 757 CAGAAAAGTTCA-TCAACATA-TAGCATTGACCATTACTTTACATACAAAGGGATTGCCA 814 | |||| | ||||| || | | | |||| ||||| || | ||||||||||||| | Sbjct 756 -ACCAAAG--GAGTCAACCTACT-GTAACGACCCTTACTCTAAACACAAAGGGATTGCTA 811 Query 815 AGAACGGTATCATGATTGGTTTACGTCGTTATCAATTTTTTGTTTTCAAAGATGGA-GGA 873 |||| ||||||||| |||||||||||||||||||| |||||||||||||||||||| ||| Sbjct 812 AGAATGGTATCATGGTTGGTTTACGTCGTTATCAAATTTTTGTTTTCAAAGATGGAGGGA 871 Query 874 AA--AGAGGAAAAGAAGAAAGATCTTTCTACAAAGAAAGTGAAATGCTACTTTATACGCA 931 || |||| |||||||| ||| |||||||||| |||||||||| ||||||||||||| Sbjct 872 AAGCAGAGAAAAAGAAG--AGA-AATTCTACAAAGCAAGTGAAATGTTACTTTATACGCA 928 Query 932 CGGACTCAACAGCTTTTTA-TGATATGCAAAATCCCTATAT-TTTAACCGGAAAGTCAAT 989 |||||| ||||| | || ||||||| ||||||||||||| || |||| | ||| || Sbjct 929 TGGACTCTACAGC-GTCTAGTGATATGGAAAATCCCTATATCCTT-GCCGGGATGTCTAT 986 Query 990 TTATGAAGCTCGTATGCATTTTATGCACGTGCAT-CGAGCACCAACTTTGGCGAATTATA 1048 | |||||||||| |||||||||||||| |||||| | | || || ||| || |||| Sbjct 987 TCATGAAGCTCGGATGCATTTTATGCATGTGCATAC-ATTGCCTTCTCCGGCCAACTATA 1045 Query 1049 TGGCAAGGTTTTCCTTAATTCTGTCAAAGACTAAAACGCTTGAAGTTGACATGACTGGGA 1108 ||||| ||||||| ||||||||||||||||| |||| ||||||||||||||||||||||| Sbjct 1046 TGGCACGGTTTTCTTTAATTCTGTCAAAGACAAAAAAGCTTGAAGTTGACATGACTGGGA 1105 Query 1109 TTACCTTTGATCAAATTGATGATATACACTGCCATGATC-AAGATGGGAAAGATGTTCTT 1167 ||||| | | ||||| |||||||||||||||||||||| ||| | || ||||||||| Sbjct 1106 TTACCGTCAAGCAAATCGATGATATACACTGCCATGATCAAAG-TAATAATGATGTTCTT 1164 Query 1168 GACAAGAACAAAAAACCTTGCATACATTCAGATGGAACTGGCTACATCTCTGAGGACCTG 1227 || ||||| |||||| | ||||| |||||||||||||| ||||||||||||||||| Sbjct 1165 GATAAGAATGGGAAACCTCGTATACACTCAGATGGAACTGGATACATCTCTGAGGACCTT 1224 Query 1228 GCTCGGATGTGTCCCCTAAATATATT-TAAAGGGAAATGTC-TCAGAAGTGAAAGTATTC 1285 |||||||||||||| ||||||| || |||||||||| | ||| |||||| | ||||| Sbjct 1225 GCTCGGATGTGTCCAGTAAATAT-TTATAAAGGGAAA-AACATCAAAAGTGACATTATTC 1282 Query 1286 A-GG--AAGCATGTTACCAAGACCCGCCTCTTTTGATCCAGTTTCGGATGTTTTATGATG 1342 | || || | ||| |||||| |||||||| ||||||| ||||||||||| |||||| Sbjct 1283 AGGGAAAAACCTGTGGCCAAGAGCCGCCTCTGCTGATCCAAATTCGGATGTTTAATGATG 1342 Query 1343 GTTATGCTGTTAAGGGAACTTTTCTCTTAAACAAGAAACTTTGTCCTCGGACTGTCCAGG 1402 | | |||||||||||||| |||||| ||||||||||| ||| ||| ||||| ||||||| Sbjct 1343 GCTCTGCTGTTAAGGGAATTTTTCTATTAAACAAGAACCTTCCTCCACGGACCGTCCAGG 1402 Query 1403 TTCGACCTTCGATGATCAAGGTGTCTAAAGATCCATCCTTGTCCAATTTTAGCACCTTTA 1462 |||||||||| ||||||||||||| ||||||| | ||||| ||||||||||| |||| Sbjct 1403 TTCGACCTTCTATGATCAAGGTGTATAAAGATAAAAATTTGTCAAATTTTAGCACTTTTA 1462 Query 1463 ACGCCTTGGAAGTAGTAACCACAAGTAATCCACCAAAAAGAACAAAGCTATCAAAAAATT 1522 || || |||| ||||| || ||||||||||||||||||||| | |||||||| || |||| Sbjct 1463 ACTCCCTGGAGGTAGTCACTACAAGTAATCCACCAAAAAGAGCGAAGCTATCGAAGAATT 1522 Query 1523 TGGTTGCGCTGCTTAGCTATGGAGGAATCCCTAATGAATTCTTTTTGGATATATTGCTCA 1582 |||| |||||||| |||||||||||| | || ||||| || ||||||||||||||||||| Sbjct 1523 TGGTCGCGCTGCTGAGCTATGGAGGAGTGCCAAATGATTTTTTTTTGGATATATTGCTCA 1582 Query 1583 ACACGTTGGAA 1593 ||||||||||| Sbjct 1583 ACACGTTGGAA 1593 > Ahg931400 jgi|Araly1|931400|scaffold_303857.1 Length=2845 Score = 466 bits (252), Expect = 4e-130 Identities = 375/435 (86%), Gaps = 6/435 (1%) Strand=Plus/Plus Query 856 GTTTTCAAAGATGGAGGAAAAGAGGAAAAGAAGAAAGATC-TTTCTACAAAGAAAGTGAA 914 ||||||||||||||||| ||||| || ||||||||||| | | |||||||| |||||| Sbjct 963 GTTTTCAAAGATGGAGGGAAAGAAGAGAAGAAGAAAGA-CGCTGCTACAAAGGGAGTGAA 1021 Query 915 ATGCTACTTTATACGCACGGACTCAACAGCTTTTTATGATATGCAAAATCCCTATATTTT 974 |||||||||||||||||| ||||| ||||||| ||||||||| ||| |||||||| || Sbjct 1022 ATGCTACTTTATACGCACAGACTCGACAGCTTCAAATGATATGCGAAACCCCTATATCTT 1081 Query 975 AACCGGAAAGTCAATTTATGAAGCTCGTATGCATTTTATGCACGTGCAT-CGAGCACCAA 1033 ||||||||||||| ||||||| ||||||||||||||||| ||| || | || Sbjct 1082 CTCCGGAAAGTCAATGCATGAAGCGCGTATGCATTTTATGCATGTGAATAC-TTTGTCAT 1140 Query 1034 CTTTGGCGAATTATATGGCAAGGTTTTCCTTAATTCTGTCAAAGACTAAAACGCTTGAAG 1093 ||||| | || ||||||||||||||||| |||||||||||||||||||||||||| |||| Sbjct 1141 CTTTGCCCAACTATATGGCAAGGTTTTCTTTAATTCTGTCAAAGACTAAAACGCTCGAAG 1200 Query 1094 TTGACATGACTGGGATTACCTTTGATCAAATTGATGATATACACTGCCATGATCAAGATG 1153 |||||||||||||||||||||| || ||||||||||||||||||||||||||||||||| Sbjct 1201 TTGACATGACTGGGATTACCTTCGAGCAAATTGATGATATACACTGCCATGATCAAGATA 1260 Query 1154 GGAAAGATGTTCTTGACAAGAACAAAAAACCTTGCATACATTCAGATGGAACTGGCTACA 1213 || ||||||||||||||||| |||||||| ||||||||||||||||||||||||| Sbjct 1261 ATAAGGATGTTCTTGACAAGAATGGGAAACCTTGTATACATTCAGATGGAACTGGCTACA 1320 Query 1214 TCTCTGAGGACCTGGCTCGGATGTGTCCCCTAAATATATTTAAAGGGAAATGTCTCAGAA 1273 ||||||||||||| ||||| |||||||| | ||||| ||||||||||||| | | |||| Sbjct 1321 TCTCTGAGGACCTTGCTCGAATGTGTCCAGTTAATATTTTTAAAGGGAAATCTATGAGAA 1380 Query 1274 GTGA-AAGTATTCAG 1287 || | || ||||||| Sbjct 1381 GTAACAA-TATTCAG 1394 Score = 339 bits (183), Expect = 1e-91 Identities = 459/583 (79%), Gaps = 55/583 (9%) Strand=Plus/Plus Query 294 CAGGGTTCTTCAAGAAGAGATGTCTGTTGATTCT-GATGCTCCTTCTCCTAAG-TCTTTG 351 |||| || |||||| | | ||||| |||||| | || |||| ||||||||| || ||| Sbjct 320 CAGGCTTTTTCAAG-A-TG-TGTCTATTGATT-TGGAAACTCCATCTCCTAAGTTC-TTG 374 Query 352 AAAAGTGAAGACAAA-GGAGGATC-TCT--GCACATTCC-CCAGCTGGTAGCT-TTGGGT 405 | ||| ||||| ||| |||||||| ||| ||||||||| || ||| ||||| || ||| Sbjct 375 AGAAGAGAAGA-AAATGGAGGATCATCTAAGCACATTCCTCC-GCTATTAGCTCTT-GGT 431 Query 406 GAACTTGAATTTAAGAAGGTGTTTT-TGTTACTTAGCTATATTCCAGGGCAA--CAT-G- 460 ||||||||||| || |||| |||| |||| |||||||||||| |||| || | | | Sbjct 432 GAACTTGAATTCAACAAGG-CTTTTCTGTTGCTTAGCTATATTGGAGGGGAATCCCTGGT 490 Query 461 TG-GGCCAGGTTATAACTGCTGATGAGATTAGACTGTGGAAAGATTTGCCAATGGTTGAA 519 || || |||||||| ||| ||||||||| ||| ||||| |||||||||||||||||| Sbjct 491 TGAGG--AGGTTATATCTGGTGATGAGATCAGAAAATGGAAGGATTTGCCAATGGTTGAA 548 Query 520 TATGAAGCAGCGGTTTGGGACCGCTTGGGCCGGCATTATTGTCCCCAAAAGGACCGAAGA 579 |||||||||| ||||||| |||| ||||| | || ||||||||||| |||||| |||||| Sbjct 549 TATGAAGCAGAGGTTTGGAACCGGTTGGGACAGCGTTATTGTCCCCCAAAGGAGCGAAGA 608 Query 580 ATGT---T-GCAATGGGATAGCGGGAAGACCCATTACTATCAGTGTAATGTTGCTCCCAA 635 | || | | || ||||||| |||||||| ||||||||||| ||| ||||||||||| | Sbjct 609 AGGTCACTTG-AAGGGGATAGTGGGAAGACTCATTACTATCAATGTCATGTTGCTCCCGA 667 Query 636 TGGTAGCTACACATTCAAGGTTCTTTCAGCTCTTCAAGGCCCTCTTCTTGAACACACTGG 695 |||||| |||| |||||||| | | | | |||||| || ||||||| Sbjct 668 TGGTAGTTACAAATTCAAGG--------G-T-T--A------TCTTCTGGAGGACACTGG 709 Query 696 AACACACTTGCACAAGGTCTTGGGTGATGATAATGTTTTAACCGTCAAATTCGCGGA--T 753 ||||||| |||||||||| |||||||||||||| ||||||||||||||||||| | | Sbjct 710 AACACACCTGCACAAGGTTTTGGGTGATGATAACGTTTTAACCGTCAAATTCGATAAAGT 769 Query 754 GTCCAGAAAAGTTCATCAACATATAGCATTGACCATTACTTTACATACAAAGGGATTGCC 813 || || || | ||| ||| | | ||||| ||||| |||||||||||||||||| Sbjct 770 GTT-AGGCGAGG--A--AACCTATTGTAATGACCTTTACTCTACATACAAAGGGATTGCT 824 Query 814 AAGAACGGTATCATGATTGGTTTACGTCGTTATCAATTTTTTG 856 ||||| ||||||||| |||| ||||| ||||||| |||||||| Sbjct 825 AAGAATGGTATCATGGTTGGGTTACGCCGTTATCGATTTTTTG 867 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 118117849745 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5