BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT2G20230.1 Length=1388 Score E Sequences producing significant alignments: (Bits) Value Ahg480447 jgi|Araly1|480447|fgenesh2_kg.3__3148__AT2G20230.1 1940 0.0 Ahg328819 jgi|Araly1|328819|fgenesh1_pm.C_scaffold_7001046 473 1e-132 > Ahg480447 jgi|Araly1|480447|fgenesh2_kg.3__3148__AT2G20230.1 Length=1354 Score = 1940 bits (1050), Expect = 0.0 Identities = 1247/1337 (93%), Gaps = 34/1337 (3%) Strand=Plus/Plus Query 67 TGAAATATTTTATAAGAAAACAAAAACAATAATTAACAAACAAAGGCGACACCTTTAGAT 126 ||| ||||||||||||||||||||||||||||||| | ||||| ||||||||||||||| Sbjct 37 TGAGATATTTTATAAGAAAACAAAAACAATAATTATCGAACAACGGCGACACCTTTAGA- 95 Query 127 TCGACAAGACGACCAT-TTTAGAAAAAGCTTCTCAAATTCTCTCCTTATCCCCAAAAATT 185 |||||||||||||| || | ||||||||||| ||| |||||||||||||||||||| Sbjct 96 --GACAAGACGACCATCGTT-G--AAAGCTTCTCAGATTTTCTCCTTATCCCCAAAAATT 150 Query 186 CAAACTTTTTTCTC-TTTGG-AAAATTCTGAGGCAAAAATGCGGCGTAATTGCTGCCATG 243 ||| | |||||||| ||||| |||||||||| |||||||||||||||||||||||||||| Sbjct 151 CAAGC-TTTTTCTCTTTTGGAAAAATTCTGA-GCAAAAATGCGGCGTAATTGCTGCCATG 208 Query 244 TTTCATTTGCTTCAACCCTCAAGATCCTTAATTTTGTCCAAGCTTTCATTGGTGTTTCGA 303 |||| |||||| |||| ||||||||||| |||||||| ||||||||||| |||||||| | Sbjct 209 TTTCGTTTGCTACAACTCTCAAGATCCTCAATTTTGTTCAAGCTTTCATCGGTGTTTCCA 268 Query 304 TCATTATCTACTCCATATGGATGCTCCATGAATACAGCCGTCACCTTCCCGTGGACCCGC 363 |||||||||||||||| ||||||||||||||||||| ||||||||||||||| ||||||| Sbjct 269 TCATTATCTACTCCATTTGGATGCTCCATGAATACAACCGTCACCTTCCCGTCGACCCGC 328 Query 364 CTCCGTCAGCTTCATCAAGCTCCGGAACCGAGATCGCTACTAGTGTATCTGAGCCCTTGA 423 ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 329 CTCCGGCAGCTTCATCAAGCTCCGGAACCGAGATCGCTACTAGTGTATCTGAGCCCTTGA 388 Query 424 AGAATCCTATTGATTTTGTGGCGAGTATCATTCTCGGGTCTAATGGTGGTGATCATGGGT 483 |||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||| Sbjct 389 AGAATCCTATTGATTTCATGGCGAGTATCGTTCTCGGGTCTAATGGTGGTGATCATGGGT 448 Query 484 TTAACCTACGCTCGTTGGACCTTCCTGCTCCATGGTTCATCTACTCTTTCATGGCGGTTG 543 |||| |||||||| ||||| ||||||||||||||||||||||||||||||||||| |||| Sbjct 449 TTAATCTACGCTCTTTGGATCTTCCTGCTCCATGGTTCATCTACTCTTTCATGGCTGTTG 508 Query 544 GTATATTGGTCTGCATTGTTACCTTCATTGGTTTCATAGCAGCTGAAGCAATCAATGGCT 603 ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 509 GTATATTGGTCTGTATTGTTACCTTCATTGGTTTCATAGCAGCTGAAGCAATCAATGGCT 568 Query 604 GTTGCTTGTGTTTTTACTCTATTCTCAAAACTCTGCTCATTCTACTTGAAGCTGCACTTG 663 ||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||| Sbjct 569 GTTGCTTGTGTTTTTACTCTATTCTCAAAACTCTGCTCATTCTCCTCGAAGCTGCACTTG 628 Query 664 TTGCATACATCGCTATTGACCGTCACTGGGAAAAGGATCTTCCGTATGATCCAACTGGAG 723 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 629 TTGCATACATCGCTATTGACCGTCACTGGGAAAAGGATCTTCCGTATGATCCAACTGGAG 688 Query 724 AACTTAGTAGTCTTAGGGCTTTCATTGAAGAAAACATCGATATATGCAAATGGGTGGGGA 783 |||| |||||||||||||| ||||||||||||||||||||||||||||||||||| |||| Sbjct 689 AACTCAGTAGTCTTAGGGCCTTCATTGAAGAAAACATCGATATATGCAAATGGGTCGGGA 748 Query 784 TTGCTGTGGTAGCAGTCCAGCTACTGTCATTGCTACTAGCCATGGTTCTCAGAGCGATGG 843 ||||||| |||||||||||||||||||| |||||||| ||||||||||||||||| |||| Sbjct 749 TTGCTGTTGTAGCAGTCCAGCTACTGTCGTTGCTACTCGCCATGGTTCTCAGAGCTATGG 808 Query 844 TTTCAACCCCGAAACCCGAACTTGACGAAGAGGAAGA-TGATGAGAACCCAAGGAGTAGA 902 ||||||||||||||||||||||||||||||||||||| | |||||||||| ||||||||| Sbjct 809 TTTCAACCCCGAAACCCGAACTTGACGAAGAGGAAGACT-ATGAGAACCCGAGGAGTAGA 867 Query 903 ACTTGGGACCCACTTCTTGGTCCGCAAGGAAACCAAGCGCCTGCTGGCTCAAGCAAGATT 962 ||||||||||||||||||||| ||||||||||||||||||||||||| |||||||| ||| Sbjct 868 ACTTGGGACCCACTTCTTGGTTCGCAAGGAAACCAAGCGCCTGCTGGGTCAAGCAAAATT 927 Query 963 GAAAACTGGAGCTCCCGAATCAGAGAAAAGTATGGTTTGAACCAGAGTCCACCGGTGAAC 1022 |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 928 GAAAACTGGAGCTCCCGAATCAGAGAAAGGTATGGTTTGAACCAGAGTCCACCGGTGAAC 987 Query 1023 CCGAAAGGTTGATGAAGCCAAAT-AATCATGTTTCTAAAACTGCATGTGTCCATATGGTC 1081 ||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||| Sbjct 988 CCGAAAGGTTGATGAAGCCAAATTAA-CATGTTTCTAAAACTGCATGTGTCCATATGGTC 1046 Query 1082 TCTGT--GAAGCTCTCTTTCTCTATGTTTTGCTCTTTGCAACTTCTCGAGTGTGCATAA- 1138 ||| | |||||||||||||||||||||| ||||||||| ||||||||||||||||||| Sbjct 1047 TCTCTCTGAAGCTCTCTTTCTCTATGTTT-GCTCTTTGCGACTTCTCGAGTGTGCATAAC 1105 Query 1139 A-----CATTTACTCAAAACAGTGCTGTATTGTGTTTACACAAACGGCATAAGCATCTTC 1193 | |||||||||||||| |||| || ||||||||||||| ||||||||||| Sbjct 1106 ATTAAACATTTACTCAAAACGGTGCCGTCTTGTGTTTACACA-------TAAGCATCTTC 1158 Query 1194 GTTTGTGTGTTTGCTTGTACAAACAATCCTGTGAACAGTTTGAAGTTAGCATTTCCACTA 1253 ||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||| Sbjct 1159 GTTTGTGTGTTTGCTTGTATAAACAATCCTGTGAACAGTTTGAAATTAGCATTTCCACTA 1218 Query 1254 TAACGTTTCGATTCAATTTATAATGAAGAAAA-CAAAACTAAAAATTGAATTGGACATCA 1312 || ||||||||||||||||||||||| |||| ||||||||||| ||||||||||||||| Sbjct 1219 GAAAGTTTCGATTCAATTTATAATGAAAAAAAGCAAAACTAAAATTTGAATTGGACATCA 1278 Query 1313 TAAACAGATTAATGTAAAATGTATA-TGTAGGTTAAACTCTTTCTTAGATTATATCATCT 1371 ||||||||||| ||||| | |||| | |||||||||||||||||||||||||||||||| Sbjct 1279 GAAACAGATTAAAGTAAA-TATATAATATAGGTTAAACTCTTTCTTAGATTATATCATCT 1337 Query 1372 ATATATGTTTCATTATT 1388 ||||||||||||||||| Sbjct 1338 ATATATGTTTCATTATT 1354 > Ahg328819 jgi|Araly1|328819|fgenesh1_pm.C_scaffold_7001046 Length=825 Score = 473 bits (256), Expect = 1e-132 Identities = 442/531 (83%), Gaps = 15/531 (3%) Strand=Plus/Plus Query 480 GGGTTT-AACCTACGCTCGTTGGACCTTCCTGCTCCATGGTTCATCTACTCTTTCATGGC 538 |||||| || || || || || || ||||||||||||||||| || |||||||||||||| Sbjct 270 GGGTTTCAATCTCCGTTCCTTAGATCTTCCTGCTCCATGGTTTATTTACTCTTTCATGGC 329 Query 539 GGTTGGTATATTGGTCTGCATTGTTACCT-TCATTGGTTTCATAGCAGCTGAAGCAATCA 597 |||| || |||||||||||||| | || |||| |||||||| ||||||||||| |||| Sbjct 330 CATTGGGATTTTGGTCTGCATTGTCA-CTATCATCGGTTTCATTGCAGCTGAAGCTATCA 388 Query 598 ATGGCTGTTGCTTGTGTTTTTACTCTATTCTCAAAACTCTGCTCATTC-TACTTGAAGCT 656 |||| |||||||||||||| || || |||||||||||||| || | || |||| ||||| Sbjct 389 ATGGATGTTGCTTGTGTTTCTATTCAATTCTCAAAACTCTTCTGA-TCATACTCGAAGCA 447 Query 657 GCACTTGTTGCATACATCGCTATTGACCGTCACTGGGAAAAGGATCTTCCGTATGATCCA 716 || ||||| | ||| || || ||||||||||||||||||||||||||||| ||||||||| Sbjct 448 GCTCTTGTGGGATATATAGCCATTGACCGTCACTGGGAAAAGGATCTTCCTTATGATCCA 507 Query 717 ACTGGAGAACTTAGTAGTCTTAGGGCTTTCATTGAAGAAAACATCGATATATGCAAATGG 776 ||||||||||| | ||||||| | |||||||| ||||||||||||||||| ||||||||| Sbjct 508 ACTGGAGAACTCAATAGTCTTCGAGCTTTCATAGAAGAAAACATCGATATTTGCAAATGG 567 Query 777 GTGGGGATTGCTGTGGTAGC-AGTCCAGCTACTGTCATTGCTACTAGCCATGGTTCTCAG 835 || ||||||| ||||||||| | ||||| |||||||||||||||| || ||||| | || Sbjct 568 GTCGGGATTGTTGTGGTAGCGA-TCCAGTTACTGTCATTGCTACTGGCTTTGGTTTTGAG 626 Query 836 AGCGATGGTTTCAACCCCGA-AACCCGAACTTGACGAAGAGGAAGATGATGAGAACCCAA 894 ||| ||||||||| |||||| || | || ||||| || ||||| ||| |||||| |||| Sbjct 627 AGCTATGGTTTCA-CCCCGACAATCAGAGCTTGATGATGAGGATGATTTTGAGAATCCAA 685 Query 895 GGAGTAGAACTTGGGACCCA-CTTCTTGGTCCGCAAGG-AAACCA-AGCGCCTGCTGGCT 951 ||||||| | | || | ||||||||||| || || |||||| | | || |||| | Sbjct 686 TGAGTAGAGCAAGAGAGA-ATCTTCTTGGTCCACA-GGCAAACCAGA-CATCTTCTGGAT 742 Query 952 CAAGCAAGATTGAAAACTGGAGCTCCCGAATCAGAGAAAAGTATGGTTTGA 1002 ||||||| ||||| || ||||| |||||||||||||| ||||| || |||| Sbjct 743 CAAGCAATATTGACAATTGGAGGTCCCGAATCAGAGAGAAGTACGGATTGA 793 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 51878913690 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5