BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G20260.1
Length=607
Score E
Sequences producing significant alignments: (Bits) Value
Ahg931351 jgi|Araly1|931351|scaffold_303808.1 647 0.0
Ahg491882 jgi|Araly1|491882|fgenesh2_kg.7__1315__AT4G28750.1 339 2e-92
> Ahg931351 jgi|Araly1|931351|scaffold_303808.1
Length=472
Score = 647 bits (350), Expect = 0.0
Identities = 433/473 (92%), Gaps = 6/473 (1%)
Strand=Plus/Plus
Query 30 CCAACGATCACACACAAATGGCGATGACGTCAGCAGCTACCGGATTTATTCTCACGGCCA 89
||||| |||||| ||| |||||||||||||||||||||||||||||||| || |||||||
Sbjct 4 CCAACAATCACAAACAGATGGCGATGACGTCAGCAGCTACCGGATTTATCCTGACGGCCA 63
Query 90 ACGTCCCGGCGGCAATAGGCGGTGGTTCTTCAAAGAGCACCACCATTGTGTCTTTCTTGC 149
|| ||||||| ||| ||||||| ||||||||||||||| ||||| |||||||||||||||
Sbjct 64 ACATCCCGGCCGCAGTAGGCGGCGGTTCTTCAAAGAGCGCCACCGTTGTGTCTTTCTTGC 123
Query 150 CGATGAGAAGCTTCGGTTCAAGGCTAGTAGTCAGAGCGGCGGAAGATACACCTCCGGCAA 209
||||||||||||||||||| ||||||||||||||||||||||||||| || ||||||| |
Sbjct 124 CGATGAGAAGCTTCGGTTCGAGGCTAGTAGTCAGAGCGGCGGAAGATGCATCTCCGGCTA 183
Query 210 CCGCCTCGTCGGATAGTTCTTCCACCACCGCTGCTGCTGCTCCGGCGAAAGTTCCGGCCG 269
| ||||| ||||| |||||||||||| | | |||||||||||| ||| ||| ||||
Sbjct 184 CTGCCTCATCGGAGGGTTCTTCCACCA---C--C-GCTGCTCCGGCGGAAGCTCCTGCCG 237
Query 270 CTAAGGCTAAACCTCCTCCAATTGGCCCAAAGAGAGGATCCAAGGTCAAGATTCTAAGGA 329
| || ||||||||||||| ||||| ||||||||||||||||||||||||||||||||||
Sbjct 238 CGAAACCTAAACCTCCTCCGATTGGTCCAAAGAGAGGATCCAAGGTCAAGATTCTAAGGA 297
Query 330 AAGAATCATACTGGTACAAGAACGTTGGATCAGTTGTGGCCGTTGATCAGGACCCGAAGA 389
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 298 AAGAATCCTACTGGTACAAGAACGTTGGATCAGTTGTGGCCGTTGATCAGGACCCGAAGA 357
Query 390 CCCGATATCCGGTTGTGGTCCGGTTCGCCAAGGTGAATTACGCGAATATATCGACCAACA 449
| ||||||||||||||||| |||||| | |||||||||||||||||||||||||||||||
Sbjct 358 CTCGATATCCGGTTGTGGTTCGGTTCTCGAAGGTGAATTACGCGAATATATCGACCAACA 417
Query 450 ACTACGCATTGGACGAGGTGGAAGAAGTAAAATGAGAGACATGGTTTATCTCT 502
||||||||||||| ||||| |||||||||||||||||||||||||||||||||
Sbjct 418 ACTACGCATTGGATGAGGTCGAAGAAGTAAAATGAGAGACATGGTTTATCTCT 470
> Ahg491882 jgi|Araly1|491882|fgenesh2_kg.7__1315__AT4G28750.1
Length=679
Score = 339 bits (183), Expect = 2e-92
Identities = 291/343 (85%), Gaps = 7/343 (2%)
Strand=Plus/Plus
Query 137 GTGTCTTTCTTGCCGATGAGAAGCTTCGGTTCAAGGCTAGTAGTCAGAGCGGCGGAAGAT 196
|||||||||||||||||||||| | |||||| ||||| |||||||| || || ||||||
Sbjct 159 GTGTCTTTCTTGCCGATGAGAAACGCCGGTTCTAGGCTCGTAGTCAGGGCAGCCGAAGAT 218
Query 197 ACACCTCCGGCAACCGCCTCGTCGGATA-GTTCTTCCACCACCGCTGCTGCTGCTCCGGC 255
| ||||||||||| | || ||||| | |||| ||| || ||||| |||||||||||
Sbjct 219 GCGGCTCCGGCAACCTCTTCATCGGA-AGGTTC-TCCGGCA--GCTGCCGCTGCTCCGGC 274
Query 256 -GAAAGTTCCGGCCGCTAAGGCTAAACCTCCTCCAATTGGCCCAAAGAGAGGATCCAAGG 314
| || | | ||| | || | || || |||||||||||||| |||||||| || ||||
Sbjct 275 TG-GAGCTGCTGCCACCAAACCCAAGCCACCTCCAATTGGCCCTAAGAGAGGGTCTAAGG 333
Query 315 TCAAGATTCTAAGGAAAGAATCATACTGGTACAAGAACGTTGGATCAGTTGTGGCCGTTG 374
||||||||||||||| |||||| || |||| ||||||||||||||||||||| |||||||
Sbjct 334 TCAAGATTCTAAGGAGAGAATCCTATTGGTTCAAGAACGTTGGATCAGTTGTTGCCGTTG 393
Query 375 ATCAGGACCCGAAGACCCGATATCCGGTTGTGGTCCGGTTCGCCAAGGTGAATTACGCGA 434
|||||||||||||||||||||| ||||||||||| |||||||| || |||||||| || |
Sbjct 394 ATCAGGACCCGAAGACCCGATACCCGGTTGTGGTTCGGTTCGCGAAAGTGAATTATGCCA 453
Query 435 ATATATCGACCAACAACTACGCATTGGACGAGGTGGAAGAAGT 477
| ||||||||||||||||| |||||||||||||| ||||||||
Sbjct 454 ACATATCGACCAACAACTATGCATTGGACGAGGTCGAAGAAGT 496
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 22187537694
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5