BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G20400.1
Length=1737
Score E
Sequences producing significant alignments: (Bits) Value
Ahg931905 jgi|Araly1|931905|scaffold_304362.1 1151 0.0
> Ahg931905 jgi|Araly1|931905|scaffold_304362.1
Length=1243
Score = 1151 bits (623), Expect = 0.0
Identities = 815/904 (90%), Gaps = 27/904 (3%)
Strand=Plus/Plus
Query 512 CCCCGAGACAACAGATTGGATTCCCTCTCCACTCCCCCATA-TTT--ATTTTCCTTCGGG 568
|||||||||| ||||||||||||| ||||||||||| ||| ||| |||||||||||||
Sbjct 359 CCCCGAGACATCAGATTGGATTCCTTCTCCACTCCCGGATATTTTCGATTTTCCTTCGGG 418
Query 569 TTCTCCCAATCTAATAATGGAGGATGGTGTCATTGATGAGATTCACAAACAAAGTGACTT 628
|||||||| || ||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 419 TTCTCCCATTCAAATAATGGATGATGGTGTCATTGATGAGATTCACAAACAAAGTGACTT 478
Query 629 GCCACTTTGGTATGACGACTTGATTACCACTGATGAAGA-TCCACTCATGTCTAGTATCT 687
|||| ||||| ||||| ||||||||| | | |||| ||| ||| || ||||||||| |||
Sbjct 479 GCCAGTTTGGGATGACCACTTGATTA-C-C-GATGGAGATTCC-CTGATGTCTAGTGTCT 534
Query 688 TGGGCGATCTTCTCCTTGACACTAATTTCAACTCAGCTTCAAAGGTCCAGCAACCAAGTA 747
||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 535 TGGAAGATCTTCTCCTTGACACTAATTTCAACTCAGCTTCAAAGGTCCAGCAACTAAGTA 594
Query 748 TGCAATCGCAGATTCAACAACCCCAAGCTGTTCTGCAGCAGCCTTCTTCTTGTGTGGAAT 807
||||||||||||||||||||||||||| |||||| | |||||||||| ||||||||||||
Sbjct 595 TGCAATCGCAGATTCAACAACCCCAAGTTGTTCTTCCGCAGCCTTCTCCTTGTGTGGAAT 654
Query 808 TGCGCCCACTTGATAGGACAGTATCCTCAAACAGCAACAACAATAGCAACAG---TAATA 864
|||| ||||||| ||||||||||||||||||||||||||||| || ||| || |||||
Sbjct 655 TGCGACCACTTGTTAGGACAGTATCCTCAAACAGCAACAACAGTAACAATAGTAATAATA 714
Query 865 ATGCAGCAGCAGCAGCTAAGGGACGTATGCGTTGGACGCCTGAACTTCATGAGGTTTTTG 924
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 715 ATGCAGCAGCAGCAGCTAAGGGACGTATGCGTTGGACGCCTGAACTTCATGAGGTTTTTG 774
Query 925 TTGACGCTGTTAACCAGCTCGGTGGCAGTAATGAAGCAACTCCTAAAGGTGTCCTGAAGC 984
|||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||
Sbjct 775 TTGACGCTGTTAACCAGCTCGGTGGCAGTAATAAAGCAACTCCTAAGGGTGTCCTGAAGC 834
Query 985 ATATGAAAGTCGAAGGTTTGACTATTTTTCATGTCAAAAGTCATTTGCAGAAATATAGAA 1044
||||||||||| ||||||||||||| | |||||||||||||||||||||||| |||||
Sbjct 835 ATATGAAAGTCCAAGGTTTGACTATATATCATGTCAAAAGTCATTTGCAGAAGTATAGGT 894
Query 1045 CAGCTAAATATATACCAGTACCATCAGAAGGTTCGCCGGAGGCAAGGTTGACACCGCTTG 1104
|||||||||||| ||||| ||||||||||||| |||| ||| ||| ||||||||||||||
Sbjct 895 CAGCTAAATATACACCAGAACCATCAGAAGGTCCGCCAGAGACAAAGTTGACACCGCTTG 954
Query 1105 AGCAAATTACATCTGATGATACGAAACGTGGGATAGATATCACTGAGACTCTGCGAATTC 1164
|||||||||| || || || |||||||||| |||||||| ||||||||||||
Sbjct 955 AGCAAATTAC----GA-GA--CG-----TGGGATAGATGTCACTGAGGCTCTGCGAATTC 1002
Query 1165 AGATGGAACATCAGAAGAAACTGCATGAGCAGCTTGAGAGTCTAAGAACAATGCAACTTC 1224
||||||||| |||||||||| |||||||||||||||||| || |||||||||||||||||
Sbjct 1003 AGATGGAACTTCAGAAGAAATTGCATGAGCAGCTTGAGATTCAAAGAACAATGCAACTTC 1062
Query 1225 GGATAGAAGAGCAAGGAAAGGCGCTGTTGATGATGATTGAGAAGCAAAATATGGGTTTCG 1284
| ||||||||||||||||||||| ||||||||||| |||||||||| ||||||||||| |
Sbjct 1063 GTATAGAAGAGCAAGGAAAGGCGTTGTTGATGATGTTTGAGAAGCAGAATATGGGTTTTG 1122
Query 1285 GCGGACCAGAACAAGGAGAGAAAACAAGTGCGAAAACGCCTGAAAATGGTTCAGAGGAGT 1344
| ||| ||||||| |||||||| ||||| ||||||| |||||||||||| |||||| |
Sbjct 1123 GTAAACCGGAACAAGAAGAGAAAAGAAGTGTGAAAACGTCTGAAAATGGTTTAGAGGACT 1182
Query 1345 CGGAATCCCCGCGGCCAAAGCGTCCGAGAAATGAAGAATGAAGGAAACCTTTCTTCGG-A 1403
|||| |||||||||||||||||||||||||| ||||||||||| || ||||||| ||| |
Sbjct 1183 CGGATTCCCCGCGGCCAAAGCGTCCGAGAAACGAAGAATGAAG-AA-CCTTTCT-CGGGA 1239
Query 1404 TGGT 1407
||||
Sbjct 1240 TGGT 1243
Score = 222 bits (120), Expect = 6e-57
Identities = 258/318 (81%), Gaps = 35/318 (11%)
Strand=Plus/Plus
Query 171 AGTAATTCAGAAACTCGAGtgatgatcccg-a--atgatgatgatgatgcaaattctatg 227
||||||||||||||| ||||||||||||| | ||||||||||||||||||||||||||
Sbjct 1 AGTAATTCAGAAACT-TAGTGATGATCCCGAATGATGATGATGATGATGCAAATTCTATG 59
Query 228 aagaattatccgttaaatgatgatgatgCAAATTCTATGAAGAATTATCCGTTAAATGAT 287
||||| |||| | ||| | | | | ||||| |||| || | |||||
Sbjct 60 GAGAATCGTCCG-T---TGA-G--G-T-C-AATTC-----CGAATGAT--G----ATGAT 98
Query 288 GATGATGCAAATTCTATGGAGAATTATCCGTTAAGGTCAATTCCGACGGAGCTTTCACAC 347
|||||||||||||||||||||||| || | | ||||||||||||| |||||||||||||
Sbjct 99 GATGATGCAAATTCTATGGAGAATCGTCTGCTGAGGTCAATTCCGAGGGAGCTTTCACAC 158
Query 348 ACTTGTTCATTGATACCACCTTCTTTACCAAACCCTTCAGAAGCAGCAGCAGACATGTCC 407
|||| ||||||||||||| | ||||||||||||||||||||||||||| | | |||||
Sbjct 159 ACTTCTTCATTGATACCA--T-CTTTACCAAACCCTTCAGAAGCAGCAG-A-A-ATGTCG 212
Query 408 T-TCAATTCAGAACTCAATCAAA-TCATGGCAAGGCCTTGTGATATGCTCCCTGCCAATG 465
| | |||| ||||| || || || ||||||||| |||| | || | ||| ||| |||||
Sbjct 213 TCT-AATTTAGAACACA-TCCAACTCATGGCAAATCCTTATCATCTACTCTCTGACAATG 270
Query 466 GTGGAGCTGTTGGTCATA 483
||||||||||||||||||
Sbjct 271 GTGGAGCTGTTGGTCATA 288
Score = 78.7 bits (42), Expect = 1e-13
Identities = 48/51 (94%), Gaps = 0/51 (0%)
Strand=Plus/Plus
Query 283 ATGATGATGATGCAAATTCTATGGAGAATTATCCGTTAAGGTCAATTCCGA 333
||||||||||||||||||||||||||||| |||||| |||||||||||||
Sbjct 37 ATGATGATGATGCAAATTCTATGGAGAATCGTCCGTTGAGGTCAATTCCGA 87
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 65172409195
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5