BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT2G20440.1 Length=1711 Score E Sequences producing significant alignments: (Bits) Value Ahg931910 jgi|Araly1|931910|scaffold_304367.1 2226 0.0 Ahg945175 jgi|Araly1|945175|scaffold_701404.1 1260 0.0 > Ahg931910 jgi|Araly1|931910|scaffold_304367.1 Length=1321 Score = 2226 bits (1205), Expect = 0.0 Identities = 1283/1321 (97%), Gaps = 3/1321 (0%) Strand=Plus/Plus Query 119 GAACAAGAAGAAGGAAGGTTGAATGTTTTGCTGCGGATTTATGTGGAAATCCGGAGGAGA 178 ||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 3 GAAGAAGAAGAA-GAAGGTTGAATGTTTTGCTGCGGATTTATGTGGAAATCCGGAGGAGA 61 Query 179 AGATTTGCAAGGTTTCTATCCAGTTAGACCTGAATGTCAACCAGATGTTCCCAGGACCCG 238 ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 62 AGATTTGCAAGGTTTCTATCCAGTTAGACCTGAATGTCAACCAGATGTTCCAAGGACCCG 121 Query 239 TTTTAAATCAAGGGCTGGAAAGACTCTAAGTGCTAGAAGATGGCACGCTGCCTTTACTGA 298 ||||||||||||||||||||||||||||||||||||||| ||||| ||||| |||||||| Sbjct 122 TTTTAAATCAAGGGCTGGAAAGACTCTAAGTGCTAGAAGGTGGCATGCTGCGTTTACTGA 181 Query 299 AGATGGCCATTTGGATATGGAAAAAGTGCTTAGACGTATACAGCGCGGAGGAATTCATCC 358 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 182 AGATGGCCATTTGGATATGGAAAAAGTGCTTAGACGTATACAGCGCGGAGGAATTCATCC 241 Query 359 TTCCATCAAAGGCGCTGTTTGGGAGTTTTTGTTAGGATGCTACGATCCAGACAGCACTTT 418 || ||||| ||||||||||||||||||||| |||| ||||||||||||||||||||||| Sbjct 242 CTCGATCAAGGGCGCTGTTTGGGAGTTTTTGCTAGGGTGCTACGATCCAGACAGCACTTT 301 Query 419 TGAGGAAAGGAACATACTGAGGAATCGCAGAAGGGAGCAGTACGGTGCATGGAAAGAAGA 478 ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 302 TGAGGAAAGGAACATTCTGAGGAATCGCAGAAGGGAGCAGTACGGTGCATGGAAAGAAGA 361 Query 479 ATGTAAGAAAATGGTTCCTGTCATTGGTAGTGGCAAGTACGTCACAATGGCAGTCGTTCA 538 ||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||| Sbjct 362 ATGTAAGAAAATGGTTCCTGTCATTGGTAGTGGCAAGTATGTCACAATGGCAGTGGTTCA 421 Query 539 AGAAAATGGGAACCCAATAGACGAATCTTCTGTAGAAAACCAAGGATGGATCGTGAAAAA 598 ||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||| Sbjct 422 AGAAAATGGGAACCCAATAGACGAATCTTCTGTAGAAAATCAAGGATGGATTGTGAAAAA 481 Query 599 CACT-GTTACAGATGAGAGAGTGCTACAATGGATGCTCTCACTACACCAGATCGGCCTTG 657 | ||||||||||||||||||||||| ||||||||||| ||||||||||||||||||| Sbjct 482 -TGTCGTTACAGATGAGAGAGTGCTACAGTGGATGCTCTCGCTACACCAGATCGGCCTTG 540 Query 658 ATGTTGCTAGAACAGATCGGTATCTCTGTTTTTATGAGAATGATCGTAATCAATCAAAAC 717 |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 541 ATGTTGCTAGAACAGATCGGTATCTCTGCTTTTATGAGAATGATCGTAATCAATCAAAAC 600 Query 718 TATGGGACGTTCTTGCCATATATACGTGGTTGAATCTTGATATTGGTTATGTTCAGGGAA 777 | ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 601 TGTGGGACGTTCTTGCCATATATACATGGTTGAATCTTGATATTGGTTATGTTCAGGGAA 660 Query 778 TGAATGATATATGTTCCCCAATGATAATCCTCTTTGATGATGAAGGCGACGCTTTCTGGT 837 ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 661 TGAATGATATATGTTCCCCAATGATAATCCTCTTTGATGATGAAGCCGACGCTTTCTGGT 720 Query 838 GCTTTGAGCGGGCAATGCGGAGACTAAGAGAAAATTTCAGGGCAACAGCAACATCAATGG 897 |||||||||| |||||||| |||||||| ||||||||||||||||||||||||||||||| Sbjct 721 GCTTTGAGCGTGCAATGCGAAGACTAAGGGAAAATTTCAGGGCAACAGCAACATCAATGG 780 Query 898 GTGTCCAGACTCAACTGGGTGTGCTCTCACAGGTCATTAAGACAGTGGATCCTCGTCTCC 957 ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 781 GTGTCCAGACTCAGCTGGGTGTGCTCTCACAGGTCATTAAGACAGTGGATCCTCGTCTCC 840 Query 958 ATCAACATCTAGAGGATCTCGATGGTGGGGAGTATCTATTTGCTATTCGGATGCTGATGG 1017 ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct 841 ATCAACATCTAGAGGATCTCGATGGTGGGGAGTATCTGTTTGCTATTCGGATGCTGATGG 900 Query 1018 TACTTTTCAGGAGAGAATTCTCTTTCCTTGACGCTTTGTACCTTTGGGAGCTGATGTGGG 1077 |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 901 TACTTTTCAGGAGAGAATTCTCCTTCCTTGACGCTTTGTACCTTTGGGAGCTGATGTGGG 960 Query 1078 CGATGGAGTACAATCCAACCATGTTTGCAACGTACGAGGAACTAGAAAACCGAAACAACG 1137 ||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||| Sbjct 961 CGATGGAGTACAATCCAACCATGTTTGCAACATATGAGGAACTAGAAAACCGAAACAACG 1020 Query 1138 CAGCATCCGATCCCAAGTTACTAAAACGGTATGGCAAGTTTGAAAGGAAATACATAAACA 1197 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1021 CAGCATCCGATCCCAAGTTACTAAAACGGTATGGCAAGTTTGAAAGGAAATACATAAACA 1080 Query 1198 GTGGGCAGAACGAGCAACATCGCAACACGCTTGCTGTTTTTGTGGTCGCAAGCGTTCTAC 1257 ||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||| Sbjct 1081 GTGGGCAGAACGAGCAACATCGCAATACGCTTGCTGTCTTTGTGGTCGCAAGCGTTCTAC 1140 Query 1258 AGACAAAGAACAAACGTCTCTTGAAGGAGGCCAAAGGCTTAGACGATGTTGTTCAGATAC 1317 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1141 AGACAAAGAACAAACGTCTCTTGAAGGAGGCCAAAGGCTTAGACGATGTTGTTCAGATAC 1200 Query 1318 TAGGAGACATTGCGGGTAATCTTGACGCCAAAAAAGCATGTAAAGAAGCGTTGAAGATCC 1377 |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 1201 TAGGAGACATTGCGGGTAATCTTGACGCGAAAAAAGCATGTAAAGAAGCGTTGAAGATCC 1260 Query 1378 ATGAAAAATTCCTGAAAAAGGCTAATAGTAATAAGCAATAAAGATTTGCTCAAAACTTCT 1437 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 1261 ATGAAAAATTCCTGAAAAAGGCTAATAGTAATAAGCAATAAAGATTTGCTCAAAACCTCT 1320 Query 1438 A 1438 | Sbjct 1321 A 1321 > Ahg945175 jgi|Araly1|945175|scaffold_701404.1 Length=1315 Score = 1260 bits (682), Expect = 0.0 Identities = 1095/1295 (85%), Gaps = 25/1295 (2%) Strand=Plus/Plus Query 123 AAGAAGAAG-GAAG-GTTGAATGTTTTGCTGCGGATTTATGTGGAAATCCGGAGGAGAAG 180 ||||| ||| |||| ||||||| |||| || ||||||||||||||||||||||| |||| Sbjct 2 AAGAA-AAGTGAAGCTTTGAATGATTTGTTGTGGATTTATGTGGAAATCCGGAGGTGAAG 60 Query 181 ATTTGCAAGGTTTCTATCCAGTTAGACCTGAATGTCAACCAGATGTTCCCAGGACCCGTT 240 |||||||||||||||||||||||||| | |||||| | |||||||||||||||| || | Sbjct 61 ATTTGCAAGGTTTCTATCCAGTTAGATCAGAATGTGTAGCAGATGTTCCCAGGACTCGAT 120 Query 241 TTAAATCAAGGGCTGG-AAAGACTCTAAGTGCTAGAAGATGGCACGCTGCCTTTACTGAA 299 |||||||||||||||| ||| |||||||||||||||| |||||||||||| ||||||||| Sbjct 121 TTAAATCAAGGGCTGGTAAA-ACTCTAAGTGCTAGAAAATGGCACGCTGCGTTTACTGAA 179 Query 300 GATGGCCATTTGGATATGGAAAAAGTGCTTAGACGTATACAGCGCGGAGGAATTCATCCT 359 ||||| |||||||||||||||| ||| ||| | |||||||||| || ||||||||||| Sbjct 180 GATGGACATTTGGATATGGAAAGAGTTCTTCGCCGTATACAGCAAGGGGGAATTCATCCC 239 Query 360 TCCATCAAAGGCGCTGTTTGGGAGTTTTTGTTAGGATGCTACGATCCAGACAGCACTTTT 419 || |||||||| | ||||||||||||||||||||| | |||||||| |||||||| ||| Sbjct 240 TCAATCAAAGGAGAGGTTTGGGAGTTTTTGTTAGGAGGTTACGATCCGGACAGCACGTTT 299 Query 420 GAGGAAAGGAACATACT-GAGGAATCGCAGAAGGGAGCAGTACGGTGCATGGAAAGAAGA 478 || ||| |||| | | | |||||||| ||||||||||||||| || ||||||||||| Sbjct 300 GAAGAACGGAATA-AGTTGAGGAATCACAGAAGGGAGCAGTATTATGGTTGGAAAGAAGA 358 Query 479 ATGTAAGAAAATGGTTCCTGTCATTGGTAGTGGCAAGTACGTCACAATGGCAGTCGTT-C 537 |||| ||| ||||||||| | ||||||| ||||||| ||||| |||||||| ||| | Sbjct 359 ATGTCGGAATATGGTTCCTCTTGTTGGTAGCGGCAAGTTTGTCACGATGGCAGTTGTTGC 418 Query 538 AAGAAAATGGGAACCCAATAGACGAATCTTCTGTAGAAAACCAAGGATGGATCGTGAAAA 597 | ||| ||||| | ||| |||| ||||| || ||||| | ||||||||| | ||||||| Sbjct 419 A-GAAGATGGGCAGCCATTAGAAGAATCCTCAGTAGAGGATCAAGGATGGCTTGTGAAAA 477 Query 598 ACACTGTTACAGATGAGAGAGTGCTACAATGGATGCTCTCACTACAC-CAGATCGGCCTT 656 | || | ||||| || | ||||| || |||||||| | || | || ||||| || Sbjct 478 CCGCTATAACAGACAAGCGTGTGCTCCAGTGGATGCT-TGTCTTGAGTCAAATCGGTCTC 536 Query 657 GATGTTGCTAGAACAGATCGGTATCTCTGTTTTTATGAGAATGATCGTAATCAATCAAAA 716 ||||| | |||||| || ||||||||||| |||||||||| ||| |||||||| ||| | Sbjct 537 GATGTGGTTAGAACGGACCGGTATCTCTGCTTTTATGAGAGTGAAAGTAATCAAGCAAGA 596 Query 717 CTATGGGACGTTCTTGCCATATATACGTGGTTGAATCTTGATATTGGTTATGTTCAGGGA 776 |||||||| ||||| |||| ||||| ||||| |||| ||||||||| |||||||| ||| Sbjct 597 CTATGGGATATTCTTTCCATCTATACATGGTTAAATCCTGATATTGGCTATGTTCAAGGA 656 Query 777 ATGAATGATATATGTTCCCCAATGATAATCCT-CTTTGATGATGAAGGCGACGCTTTCTG 835 |||||||| ||||||||||| ||||||||||| ||| || ||||||| |||||||||||| Sbjct 657 ATGAATGACATATGTTCCCCGATGATAATCCTACTT-GAAGATGAAGCCGACGCTTTCTG 715 Query 836 GTGCTTTGAGCGGGCAATGCGGAGACTAAGAGAAAATTTCAGGGCAACAGCAACATCAAT 895 |||||||||||| |||||||| ||||||||||||||||||||| |||| || |||||||| Sbjct 716 GTGCTTTGAGCGTGCAATGCGAAGACTAAGAGAAAATTTCAGGACAACGGCGACATCAAT 775 Query 896 GGGTGTCCAGACTCAACTGGGTGTGCTCTCACAGGTCATTAAGACAGTGGATCCTCGTCT 955 ||| ||||||||||| |||||| ||||||||||||||||||| || || |||||||| || Sbjct 776 GGGCGTCCAGACTCAGCTGGGTATGCTCTCACAGGTCATTAAAACCGTTGATCCTCGGCT 835 Query 956 CCATCAACATCTAGAGGATCTCGATGGTGGGGAGTATCTATTTGCTATTCGGATGCTGAT 1015 ||||| ||||| ||||||||||| ||||| |||||||| |||||||| || ||| |||| Sbjct 836 ACATCAGCATCTTGAGGATCTCGACGGTGGAGAGTATCTGTTTGCTATACGAATGTTGAT 895 Query 1016 GGTACTT-TTCAGGAGAGAATTCTCTTTCCTTGACGCTTTGTACCTTTGGGAGCTGATGT 1074 |||| || ||||||||||| ||||| |||||||| ||||||||||||||||||||||||| Sbjct 896 GGTA-TTGTTCAGGAGAGAGTTCTCCTTCCTTGATGCTTTGTACCTTTGGGAGCTGATGT 954 Query 1075 GGGCGATGGAGTACAATCCAACCATGTTTGCAACGTACGAGGAACTAGAAAACCGAAACA 1134 |||| |||||||||||||||| || ||||||| | ||||| |||| | | ||| ||||| Sbjct 955 GGGCTATGGAGTACAATCCAAACAAGTTTGCATCATACGAAGAACCACAGAACATAAACA 1014 Query 1135 ACGC---AGCATC-CGATCCCAAGTTACTAAAACGGTATGGCAAGTTTGAAAGGAAATAC 1190 || | || | | |||||| | |||||| || | |||||| |||||||| || ||||| Sbjct 1015 ACTCCTCAGGA-CACGATCCGAGGTTACTCAAGCAGTATGGAAAGTTTGAGAGAAAATAT 1073 Query 1191 ATAAACAGTGGGCAGAACGAGCAACATCGCAACACGCTTGCTGTTTTTGTGGTCGCAAGC 1250 ||||| | ||| |||||||||||||| | |||||||||||||||||||| || |||||| Sbjct 1074 ATAAAGAATGGCCAGAACGAGCAACA-C--AACACGCTTGCTGTTTTTGTTGTAGCAAGC 1130 Query 1251 GTTCTACAGACAAAGAACAAACGTCTCTTGAAGGAGGCCAAAGGCTTAGACGATGTTGTT 1310 ||||| | |||||||||||||||||||||||||| || |||||| |||| || |||||| Sbjct 1131 GTTCTTGAAACAAAGAACAAACGTCTCTTGAAGGAAGCAAAAGGCCTAGATGACGTTGTT 1190 Query 1311 CAGATACTAGGAGACATTGCGGGTAATCTTG-ACGCCAAAAAAGCATGTAAAGAAGCGTT 1369 |||||| | || | ||||| |||||| ||| |||| | |||||||||||||||||| || Sbjct 1191 CAGATATTGGGCGGTATTGCAGGTAAT-TTGGACGCGAGAAAAGCATGTAAAGAAGCTTT 1249 Query 1370 GAAGATCCATGAAAAATTCCTGAAAAAGGCTAATA 1404 |||||| ||||||||||||||||| |||||||||| Sbjct 1250 GAAGATTCATGAAAAATTCCTGAAGAAGGCTAATA 1284 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 64182062825 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5