BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT2G20550.1 Length=1203 Score E Sequences producing significant alignments: (Bits) Value Ahg480885 jgi|Araly1|480885|fgenesh2_kg.3__3586__AT2G20550.2 1260 0.0 Ahg480886 jgi|Araly1|480886|fgenesh2_kg.3__3587__AT2G20560.1 773 0.0 > Ahg480885 jgi|Araly1|480885|fgenesh2_kg.3__3586__AT2G20550.2 Length=1232 Score = 1260 bits (682), Expect = 0.0 Identities = 931/1044 (89%), Gaps = 45/1044 (4%) Strand=Plus/Plus Query 175 CCC-AGAAATGCGGATGATATATATTCTGAGTTCTTTGGGGTCTCTAGCCCTTCTGGTCC 233 ||| ||||| ||||||||||||| ||||||||||||| || ||||||||| ||||| Sbjct 219 CCCGAGAAAGGCGGATGATATATTTTCTGAGTTCTTT--GG----TAGCCCTTCAGGTCC 272 Query 234 AAGAAATAAGGATGATATATTTTCTGAGTTCTTTGAGGTCTCTAACCCTTCTGGTCCGAG 293 |||| | ||||||||||| | |||||||||| |||||||| |||||| |||||||| Sbjct 273 GAGAACTGCGGATGATATATCAGCAGAGTTCTTTGGGGTCTCTAGCCCTTCAGGTCCGAG 332 Query 294 AGA-TAAGGATGATATATCTGCTGAGTACTTTGGGGTCCCTAG-CC--CT--T-CTG--G 344 | | | ||||||||||| | |||| | ||||| ||||||| || || | ||| | Sbjct 333 A-ACTGCGGATGATATATTTTCTGAATTCTTTGAATTCCCTAGACCTTCTGCTGCTGCTG 391 Query 345 C-AGTGGCAGCAGTGGAGGCAG-AGAAGGAGGAGGTGGTGGTGGTGGCACAAT-GCATCA 401 | |||| | |||| ||| | | ||||||| ||||||||||| ||| | || |||||| Sbjct 392 CTGGTGGTAATGGTGGCGGCGGCA-AAGGAGGTGGTGGTGGTGGCGGCTC-ATCGCATCA 449 Query 402 CGGTGGAGCTAGGAAGGCAGCTCCTGTTGaaaaaaaGTTGCCTTGTAGCCTTGAAGATCT 461 |||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 450 CGGTGGAGCTAGAAAGGCAGCTCCTGTTGAAAAAGAGTTGCCTTGTAGCCTTGAAGATCT 509 Query 462 TTACAAAGGAACCACCAAGAAGATGAAGATCTCTAGAGAGATTGCTGGTGTCTTTGGCAA 521 |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| | Sbjct 510 TTACAAAGGAACCACCAAGAAGATGAAGATCTCTAGGGAGATTGCTGGTGTCTTTGGCCA 569 Query 522 GACGACGCAGGTACAAGAGATTTTGACTGTTGATGTGAAACCGGGGTGGAAGACA-GGCA 580 ||||| |||||||||||||||||||||||||||||||||||| |||||||||| | |||| Sbjct 570 GACGATGCAGGTACAAGAGATTTTGACTGTTGATGTGAAACCAGGGTGGAAGA-AGGGCA 628 Query 581 CAAAGATCACATTCTCGGAGAAAGGAAATGAGCAACCCGGTGTGATACCAGCGGATTTAG 640 |||||||||||||| ||| ||||||||||||||||||||||||||| |||||||||||| Sbjct 629 CAAAGATCACATTCACGGCGAAAGGAAATGAGCAACCCGGTGTGATTTCAGCGGATTTAG 688 Query 641 TCTTCATCATAGATGAGAAGCCTCATCCGGTTTTCACTCGAGAGGGTAATGACCTCGTAG 700 |||||||||| |||||||||||||||||| ||||||||||||| ||||| |||||||||| Sbjct 689 TCTTCATCATCGATGAGAAGCCTCATCCGATTTTCACTCGAGATGGTAACGACCTCGTAG 748 Query 701 TCACACAGAAGATCTCAGTTCTCGAGGCCTTTACCGGCTACACCGTCAACCTGACTACAC 760 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 749 TCACACAGAATATCTCAGTTCTCGAGGCCTTTACCGGCTACACCGTCAACCTGACTACAC 808 Query 761 TTGATGGTCGGAGACTGACCATCCCAGTCAACACTGTGATCCATCCCGAGTATGTGGAAG 820 |||||||||||||||||||||||||||||||||||||||||||||| ||||| ||| ||| Sbjct 809 TTGATGGTCGGAGACTGACCATCCCAGTCAACACTGTGATCCATCCAGAGTACGTGAAAG 868 Query 821 TGGTTCCAAATGAAGGAATGCCGTTGCAGAAAGACCAGGCTAAGAAAGGCAACTTGAGGA 880 |||||||||||||||||||||| ||||||||||||||| |||||||||||||||||| || Sbjct 869 TGGTTCCAAATGAAGGAATGCCATTGCAGAAAGACCAGACTAAGAAAGGCAACTTGACGA 928 Query 881 TCAAATTTAACATCAAGTTCCCTACAACGTTAACCTCAGAGCAGAAGACAGGATTGAAGA 940 ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 929 TCAAATTTAACATCAAGTTCCCTACAAGGTTAACCTCAGAGCAGAAGACAGGATTGAAGA 988 Query 941 AACTTCTCGGATGAATGGAGTTAAAATCAGCCCAGTCCAGTTAAAATCAGCCCAGTCCAG 1000 || ||||||||||||| ||||||||||||||||| ||||| | || || | | | Sbjct 989 AAATTCTCGGATGAATTGAGTTAAAATCAGCCCATTCCAG--ACAA-CA-C--A-T---- 1037 Query 1001 ACAAAACAATGTAGAATACGAGAGGAAGTATCAAAGCTCCTATATATTGTGATTAAATAC 1060 |||||||||||| |||||| ||||||||| |||||||||||||||||||| Sbjct 1038 ---------TGTAGAATACGACAGGAAGCATCAAAGCTTCTATATATTGTGATTAAATAA 1088 Query 1061 TGTTGTGGCCTTTCTGATCGATTTGTAGCATATGTATGAATGAGTACTGTTGTGACCTTT 1120 ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1089 TGTTGTGCCCTTTCTGATCGATTTGTAGCATATGTATGAATGAGTACTGTTGTGACCTTT 1148 Query 1121 ATGATCGATTTGTAACGTATGTATAATTAAATACTGTTGT-ATATTTCTGATCGATTTGT 1179 ||||||||||||||| ||||||||||||||||||||||| || |||||||||||||||| Sbjct 1149 CTGATCGATTTGTAACATATGTATAATTAAATACTGTTGTGATCTTTCTGATCGATTTGT 1208 Query 1180 AACATATGTATGATTGAAGACGCC 1203 |||||||||||||||||| ||||| Sbjct 1209 AACATATGTATGATTGAATACGCC 1232 Score = 204 bits (110), Expect = 1e-51 Identities = 194/231 (84%), Gaps = 20/231 (9%) Strand=Plus/Plus Query 58 GAACGATTTCTGGAACATTCATTCCACACTCTGAGAAGAAACATGAGTCACCCGAGAAAT 117 ||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||| Sbjct 170 GAACGATTTCTGGAACA-TCAGTCCACACTCTGAGAAGAAACATGAGTCACCCGAGAAAG 228 Query 118 GCAGATGATATATTTTCTGAGTTCTTTGGGGTCTCTAGACCTTCTGGTCCTTCTGGTCCC 177 || |||||||||||||||||||||||||| | || ||||| ||||| | Sbjct 229 GCGGATGATATATTTTCTGAGTTCTTTGG--T----AGCCCTTCAGGTCC----G----- 273 Query 178 AGAAATGCGGATGATATAT-ATTCTGAGTTCTTTGGGGTCTCTAGCCCTTCTGGTCCAAG 236 |||| |||||||||||||| | | |||||||||||||||||||||||||| ||||| || Sbjct 274 AGAACTGCGGATGATATATCAG-CAGAGTTCTTTGGGGTCTCTAGCCCTTCAGGTCCGAG 332 Query 237 AAATAAGGATGATATATTTTCTGAGTTCTTTGAGGTCTCTA-ACCCTTCTG 286 || | |||||||||||||||||| |||||||| || ||| ||| ||||| Sbjct 333 AACTGCGGATGATATATTTTCTGAATTCTTTGAATTCCCTAGACC-TTCTG 382 > Ahg480886 jgi|Araly1|480886|fgenesh2_kg.3__3587__AT2G20560.1 Length=1449 Score = 773 bits (418), Expect = 0.0 Identities = 543/604 (90%), Gaps = 6/604 (1%) Strand=Plus/Plus Query 367 GAAGGAGGAGGTGGTGGTGGTGGCACAATGCATCACGGTGGAGCTAGGAAGGCAGCTCCT 426 |||||||| || || ||||||||| |||||||||||||||||||||||||||| |||||| Sbjct 633 GAAGGAGGGGGCGGCGGTGGTGGCTCAATGCATCACGGTGGAGCTAGGAAGGCGGCTCCT 692 Query 427 GTTGaaaaaaaGTTGCCTTGTAGCCTTGAAGATCTTTACAAAGGAACCACCAAGAAGATG 486 | ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 693 ATCGAAAATAAGTTGCCTTGTAGCCTTGAAGATCTTTACAAAGGAACCACCAAGAAGATG 752 Query 487 AAGATCTCTAGAGAGATTGCTGGTGTCTT-TGGCAAGACGACGCAGGTACAAGAGATTTT 545 | ||||||||| |||||||||| ||| | ||||||||| | ||| || |||||||||| Sbjct 753 AGGATCTCTAGGGAGATTGCTGATGT-TAGTGGCAAGACAATGCAAGTGGAAGAGATTTT 811 Query 546 GACTGTTGATGTGAAACCGGGGTGGAAGACAGGCACAAAGATCACATTCTCGGAGAAAGG 605 ||| |||||||||| || |||||||||| ||||||||||||||||||| | |||||||| Sbjct 812 GACCATTGATGTGAAGCCAGGGTGGAAGAAAGGCACAAAGATCACATTCCCAGAGAAAGG 871 Query 606 AAATGAGCAACCCGGTGTGATACCAGCGGATTTAGTCTTCATCATAGATGAGAAGCCTCA 665 ||||||||||| |||||||| ||||||||||||||||||||||| || ||||||||||| Sbjct 872 CAATGAGCAACCTGGTGTGATTCCAGCGGATTTAGTCTTCATCATTGACGAGAAGCCTCA 931 Query 666 TCCGGTTTTCACTCGAGAGGGTAATGACCTCGTAGTCACACAGAAGATCTCAGTTCTCGA 725 ||||||||||||||||||||||| ||||||||||||||||||||||||||| || | || Sbjct 932 CCCGGTTTTCACTCGAGAGGGTAACGACCTCGTAGTCACACAGAAGATCTCACTTGTTGA 991 Query 726 GGCCTTTACCGGCTACACCGTCAACCTGACTACACTTGATGGTCGGAGACTGACCATCCC 785 |||||| || |||||||| || ||||||||||||||||||||||| |||||||| ||||| Sbjct 992 GGCCTTGACAGGCTACACAGTGAACCTGACTACACTTGATGGTCGAAGACTGACAATCCC 1051 Query 786 AGTCAACACTGTGATCCATCCCGAGTATGTGGAAGTGGTTCCAAATGAAGGAATGCCGTT 845 ||||| || ||| ||||||||||||| | ||||||||||||||| |||||||||||||| Sbjct 1052 AGTCACCAAAGTGGTCCATCCCGAGTACGAGGAAGTGGTTCCAAAGGAAGGAATGCCGTT 1111 Query 846 GCAGAAAGACCAGGCTAAGAAAGGCAACTTGAGGATCAAATTTAACATCAAGTTCCCTAC 905 ||||||||||||| |||||||||| ||||||||||||||||| ||||||||||||||||| Sbjct 1112 GCAGAAAGACCAGACTAAGAAAGGAAACTTGAGGATCAAATTCAACATCAAGTTCCCTAC 1171 Query 906 AACG-TTAACCTCAGAGCAGAAGACAGGATTGAAGAAACTTCTCGGATGAAT-GGAGTTA 963 || | |||||||||||||||||||||||| ||||||| || ||||| ||||| || |||| Sbjct 1172 AA-GATTAACCTCAGAGCAGAAGACAGGAGTGAAGAAGCTCCTCGGCTGAATTGG-GTTA 1229 Query 964 AAAT 967 ||| Sbjct 1230 TAAT 1233 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 44908796226 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5