BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G20560.1
Length=1432
Score E
Sequences producing significant alignments: (Bits) Value
Ahg480886 jgi|Araly1|480886|fgenesh2_kg.3__3587__AT2G20560.1 1899 0.0
Ahg480885 jgi|Araly1|480885|fgenesh2_kg.3__3586__AT2G20550.2 774 0.0
Ahg491921 jgi|Araly1|491921|fgenesh2_kg.7__1354__AT4G28480.1 752 0.0
> Ahg480886 jgi|Araly1|480886|fgenesh2_kg.3__3587__AT2G20560.1
Length=1449
Score = 1899 bits (1028), Expect = 0.0
Identities = 1323/1460 (91%), Gaps = 42/1460 (3%)
Strand=Plus/Plus
Query 1 AACGTTCCACAGAATTCTCCACAACTCTGAGAAGAAACATCATGAATCCGTCGTTTTTAA 60
||| ||||||||||||||||| |||||||||||||||||||||||||||| |||||||||
Sbjct 1 AACATTCCACAGAATTCTCCA-AACTCTGAGAAGAAACATCATGAATCCGCCGTTTTTAA 59
Query 61 GACCAAAACTCATCTAATCTTCAACAAAAG-ACTATC-----AAA---AGAAGAAACAGA 111
|||| |||||| | ||||||||||| ||| |||||| ||| ||||||||||||
Sbjct 60 GACC-AAACTCTTGTAATCTTCAAC-TAAGAACTATCATAATAAATCCAGAAGAAACAGA 117
Query 112 GCAAATTTCATTCTCTCAGAACAAATATATACATATTAATCAGAATCAGGAAAAGTGAAG 171
|||||||||||| | || |||| | || ||||||||||||||||||||||||||||
Sbjct 118 GCAAATTTCATTTTTTCTGAAC----A-AT--ATATTAATCAGAATCAGGAAAAGTGAAG 170
Query 172 AAGCG-AA-AGAG-AGAAGAAG-A--TCGGATGGGAGTGGATTACTACAAAGTCCTCCAA 225
||||| || |||| |||||||| | ||||||||||||||||||||||||||||||||||
Sbjct 171 AAGCGAAAGAGAGAAGAAGAAGAAGGTCGGATGGGAGTGGATTACTACAAAGTCCTCCAA 230
Query 226 GTCGATCGCAGCGCAAGCGACGATGATCTCAAGAAAGCTTATCGTAAACTTGCCATGAAA 285
|| ||||||| ||| |||||||||||||| |||||||||||||||||||| |||||||||
Sbjct 231 GTTGATCGCAACGCCAGCGACGATGATCTTAAGAAAGCTTATCGTAAACTCGCCATGAAA 290
Query 286 TGGCATCCCGACAAAAATCCCAACAACAAAAAGGATGCCGAAGCTATGTTCAAACAAATA 345
||||||||||||||||| |||||||||||||| || |||||||||||||||||||||||
Sbjct 291 TGGCATCCCGACAAAAACCCCAACAACAAAAAAGACGCCGAAGCTATGTTCAAACAAATC 350
Query 346 TCCGAAGCTTACGAGGTACTAAGTGATCCTCAGAAGAAAGCTGTGTATGATCAATATGGT 405
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 351 TCCGAAGCTTACGAGGTACTAAGTGATCCTCAGAAGAAAGCTGTGTATGATCAATATGGT 410
Query 406 GAGGAAGGTTTGAAAGGGAACGTGCCACCTCCGGATGCAGGTGGAGCTACTTACTTCTCT 465
|| ||||||||||||||||| ||||||||||| ||||| |||||||||||||| ||||||
Sbjct 411 GAAGAAGGTTTGAAAGGGAATGTGCCACCTCCAGATGCTGGTGGAGCTACTTATTTCTCT 470
Query 466 ACCGGGGATGGTCCAACGTCCTTCAGGTTCAACCCGAGAAATGCGGATGATATATTTGCT 525
|||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||
Sbjct 471 ACCGGGGATGGTCCAACGTCCTTCCGGTTTAACCCGAGAAATGCGGATGATATATTTGCT 530
Query 526 GAGTTCTTTGGCTTCTCTAGCCCATTTGG-----C-GGCGGAAGAGGTGGTACAAGATTC 579
||||| ||||| |||||||| |||||||| | ||||||||||||||||||||||||
Sbjct 531 GAGTTTTTTGGGTTCTCTAGTCCATTTGGTGGTGCTGGCGGAAGAGGTGGTACAAGATTC 590
Query 580 TCTAGCAGCATGTTTGGTGATAATATGTTTGCTTCTTTCGGCGAAGGAGGAGGCGGTGGT 639
||||||||||||||||||||| |||| ||||||||||||||||||||||| ||||| |||
Sbjct 591 TCTAGCAGCATGTTTGGTGATGATATATTTGCTTCTTTCGGCGAAGGAGGGGGCGGCGGT 650
Query 640 GGTGGCTCGATGCATCACGGTGGAGCTAGGAAGGCTGCTCCTATCGAAAACAAGTTGCCT 699
|||||||| |||||||||||||||||||||||||| |||||||||||||| |||||||||
Sbjct 651 GGTGGCTCAATGCATCACGGTGGAGCTAGGAAGGCGGCTCCTATCGAAAATAAGTTGCCT 710
Query 700 TGTAGCCTTGAAGATCTTTACAAAGGAACCACCAAAAAGATGAGGATTTCTAGGGAGATT 759
||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||
Sbjct 711 TGTAGCCTTGAAGATCTTTACAAAGGAACCACCAAGAAGATGAGGATCTCTAGGGAGATT 770
Query 760 GCTGATGTCAGTGGCAAGACGATGCAGGTGGAAGAGATTTTGACCATTGATGTGAAACCA 819
|||||||| ||||||||||| ||||| ||||||||||||||||||||||||||||| |||
Sbjct 771 GCTGATGTTAGTGGCAAGACAATGCAAGTGGAAGAGATTTTGACCATTGATGTGAAGCCA 830
Query 820 GGATGGAAGAAAGGCACAAAGATCACGTTCCCAGAGAAAGGCAATGAGCAACCCGGTGTG 879
|| ||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||
Sbjct 831 GGGTGGAAGAAAGGCACAAAGATCACATTCCCAGAGAAAGGCAATGAGCAACCTGGTGTG 890
Query 880 ATTCCAGCGGATTTAGTCTTCATAATCGACGAGAAGCCTCACCCGGTTTTCACTCGAGAG 939
||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||
Sbjct 891 ATTCCAGCGGATTTAGTCTTCATCATTGACGAGAAGCCTCACCCGGTTTTCACTCGAGAG 950
Query 940 GGTAACGACCTCATAGTCACACAGAAGATCTCACTTGTTGAGGCCTTGACTGGTTACACA 999
|||||||||||| ||||||||||||||||||||||||||||||||||||| || ||||||
Sbjct 951 GGTAACGACCTCGTAGTCACACAGAAGATCTCACTTGTTGAGGCCTTGACAGGCTACACA 1010
Query 1000 GTGAACCTGACTACTCTTGATGGTCGGAGACTGACAATTCCAGTCACCAACGTGGTCCAT 1059
|||||||||||||| ||||||||||| ||||||||||| ||||||||||| |||||||||
Sbjct 1011 GTGAACCTGACTACACTTGATGGTCGAAGACTGACAATCCCAGTCACCAAAGTGGTCCAT 1070
Query 1060 CCCGAGTACGAGGAAGTGGTACCGAAGGAAGGGATGCCATTGCAAAAAGACCAGACTAAG 1119
|||||||||||||||||||| || |||||||| ||||| ||||| |||||||||||||||
Sbjct 1071 CCCGAGTACGAGGAAGTGGTTCCAAAGGAAGGAATGCCGTTGCAGAAAGACCAGACTAAG 1130
Query 1120 AGAGGTAACTTGAGGATCAAATTTAACATCAAGTTCCCTACAAGGTTAACCTCAGAGCAG 1179
| ||| ||||||||||||||||| |||||||||||||||||||| |||||||||||||||
Sbjct 1131 AAAGGAAACTTGAGGATCAAATTCAACATCAAGTTCCCTACAAGATTAACCTCAGAGCAG 1190
Query 1180 AAGACAGGAGTGAAGAAACTTCTCGGATGAAATGAGTTATAGTCAGCACATTTCAGACAA 1239
||||||||||||||||| || ||||| |||| || |||||| | || | ||| | |||||
Sbjct 1191 AAGACAGGAGTGAAGAAGCTCCTCGGCTGAATTGGGTTATAATTAGAAGATTCCGGACAA 1250
Query 1240 AACAATGTTGAACAGAAGAGGAACAAGAAA--------AT--CATGTTGCAGACCACAGG 1289
|||| ||||||||| ||||| ||| || ||||||| ||| |||
Sbjct 1251 GGGGATGTA-AACAGAAGAAGAACATCAAAGCTTCTTTATATCATGTTGGAGATGGCAGA 1309
Query 1290 GATTGTGATTAAATACTGTTGTGACCTTTTTGATCGATTTGTAACATATGTACGATTGGA 1349
|||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||
Sbjct 1310 GATTGTGATTAAATACTGTTAAGACCTTTTTGATCGATTTGTAACATATGTACAATTGGA 1369
Query 1350 TACCTCCTAATAAATTTGTTACTTTCTCTATAATCAAAACGCTTCTAAATCCATACCTAT 1409
||| |||||||||||||||| ||||||||||||||||||||||||||||| | |||||||
Sbjct 1370 TACATCCTAATAAATTTGTTGCTTTCTCTATAATCAAAACGCTTCTAAATTCGTACCTAT 1429
Query 1410 AAATGCAAGAGCGTTGCTGT 1429
||| |||||||| ||| |||
Sbjct 1430 AAAGGCAAGAGCATTGTTGT 1449
> Ahg480885 jgi|Araly1|480885|fgenesh2_kg.3__3586__AT2G20550.2
Length=1232
Score = 774 bits (419), Expect = 0.0
Identities = 629/729 (86%), Gaps = 20/729 (3%)
Strand=Plus/Plus
Query 618 CGGCGAAGGAGGAGGCGGTGGTGGTGGCTCGAT-GCATCACGGTGGAGCTAGGAAGGCTG 676
|||| ||||||| || |||||||| ||||| || |||||||||||||||||| ||||| |
Sbjct 411 CGGCAAAGGAGGTGGTGGTGGTGGCGGCTC-ATCGCATCACGGTGGAGCTAGAAAGGCAG 469
Query 677 CTCCTATCGAAAACA-AGTTGCCTTGTAGCCTTGAAGATCTTTACAAAGGAACCACCAAA 735
||||| | ||||| | |||||||||||||||||||||||||||||||||||||||||||
Sbjct 470 CTCCTGTTGAAAA-AGAGTTGCCTTGTAGCCTTGAAGATCTTTACAAAGGAACCACCAAG 528
Query 736 AAGATGAGGATTTCTAGGGAGATTGCTGATGTCAGTGGCAAGACGATGCAGGTGGAAGAG 795
||||||| ||| |||||||||||||||| |||| |||| ||||||||||||| |||||
Sbjct 529 AAGATGAAGATCTCTAGGGAGATTGCTGGTGTCTTTGGCCAGACGATGCAGGTACAAGAG 588
Query 796 ATTTTGACCATTGATGTGAAACCAGGATGGAAGAAAGGCACAAAGATCACGTTCCCAGAG 855
|||||||| |||||||||||||||| |||||||| |||||||||||||| ||| | | |
Sbjct 589 ATTTTGACTGTTGATGTGAAACCAGGGTGGAAGAAGGGCACAAAGATCACATTCACGGCG 648
Query 856 AAAGGCAATGAGCAACCCGGTGTGATTCCAGCGGATTTAGTCTTCATAATCGACGAGAAG 915
||||| ||||||||||||||||||||| ||||||||||||||||||| ||||| ||||||
Sbjct 649 AAAGGAAATGAGCAACCCGGTGTGATTTCAGCGGATTTAGTCTTCATCATCGATGAGAAG 708
Query 916 CCTCACCCGGTTTTCACTCGAGAGGGTAACGACCTCATAGTCACACAGAAGATCTCACTT 975
||||| ||| ||||||||||||| |||||||||||| ||||||||||||| |||||| ||
Sbjct 709 CCTCATCCGATTTTCACTCGAGATGGTAACGACCTCGTAGTCACACAGAATATCTCAGTT 768
Query 976 GTTGAGGCCTTGACTGGTTACACAGTGAACCTGACTACTCTTGATGGTCGGAGACTGACA 1035
| |||||||| || || ||||| || ||||||||||| ||||||||||||||||||||
Sbjct 769 CTCGAGGCCTTTACCGGCTACACCGTCAACCTGACTACACTTGATGGTCGGAGACTGACC 828
Query 1036 ATTCCAGTCACCAAC-GTGGTCCATCCCGAGTACGAGGAAGTGGTACCGAAGGAAGGGAT 1094
|| ||||||| | || ||| ||||||| ||||||| | ||||||| || || ||||| ||
Sbjct 829 ATCCCAGTCAAC-ACTGTGATCCATCCAGAGTACGTGAAAGTGGTTCCAAATGAAGGAAT 887
Query 1095 GCCATTGCAAAAAGACCAGACTAAGAGAGGTAACTTGAGGATCAAATTTAACATCAAGTT 1154
||||||||| |||||||||||||||| ||| ||||||| |||||||||||||||||||||
Sbjct 888 GCCATTGCAGAAAGACCAGACTAAGAAAGGCAACTTGACGATCAAATTTAACATCAAGTT 947
Query 1155 CCCTACAAGGTTAACCTCAGAGCAGAAGACAGGAGTGAAGAAACTTCTCGGATGAAATGA 1214
|||||||||||||||||||||||||||||||||| |||||||| |||||||||||| |||
Sbjct 948 CCCTACAAGGTTAACCTCAGAGCAGAAGACAGGATTGAAGAAAATTCTCGGATGAATTGA 1007
Query 1215 GTTATAGTCAGCACATTTCAGACAAAACAATGTTGAACA-GAAGAGGAA-CAAGAAAATC 1272
|||| | ||||| |||| ||||||| ||| ||| ||| | || ||||| || ||| |
Sbjct 1008 GTTAAAATCAGCCCATTCCAGACAACACATTGTAGAATACGAC-AGGAAGCATCAAAG-C 1065
Query 1273 ATGTTGCAGACCACAGGGATTGTGATTAAATACTGTTGTGACCTTTTTGATCGATTTGTA 1332
| | | | | | ||||||||||||| ||||||| ||||| |||||||||||||
Sbjct 1066 -T-T--CT-AT-ATA----TTGTGATTAAATAATGTTGTGCCCTTTCTGATCGATTTGTA 1115
Query 1333 ACATATGTA 1341
||||||||
Sbjct 1116 GCATATGTA 1124
> Ahg491921 jgi|Araly1|491921|fgenesh2_kg.7__1354__AT4G28480.1
Length=1466
Score = 752 bits (407), Expect = 0.0
Identities = 865/1079 (80%), Gaps = 59/1079 (5%)
Strand=Plus/Plus
Query 146 ATTAATCAGAATCAGGAAAAGTGAAGAAGCG--A-A-AG-AGA-GAAGAAGATCG-GATG 198
||||||| || ||||||||||||||||| || | | || ||| ||||||| | | ||||
Sbjct 196 ATTAATCGGATTCAGGAAAAGTGAAGAAACGTAAGAGAGAAGACGAAGAAGGT-GAGATG 254
Query 199 GGAGTGGATTACTACAAAGTCCTCCAAGTCGATCGCAGCGC-AAGCGACGATGATCTCAA 257
||||||||||| ||||| || | || || ||| | ||||| || ||||||||| || ||
Sbjct 255 GGAGTGGATTATTACAAGGTGTTACAGGTTGATAGAAGCGCTAA-CGACGATGACCTTAA 313
Query 258 GAAAGCTTATCGTAAACTTGCCATGAAATGGCATCCCGACAAAAATCCC-AACAACAAAA 316
|||||||||| | ||||| || |||||||||||||||||||| || ||| ||||||||||
Sbjct 314 GAAAGCTTATAGAAAACTCGCTATGAAATGGCATCCCGACAAGAA-CCCTAACAACAAAA 372
Query 317 AGGATGCCGAAGCTATGTTCAAACAAATATCCGAAGCTTACGAGGTACTAAGTGATCCTC 376
| || || || |||| |||||| || || || ||||| ||||| || || || |||||||
Sbjct 373 AAGACGCTGAGGCTAAGTTCAAGCAGATCTCTGAAGCCTACGATGTTCTTAGCGATCCTC 432
Query 377 AGAAGAAAGCTGTGTATGATCAATATGGTGAGGAAGGTTTGAAAGGGAACGTGCCACCTC 436
| |||| ||| || ||||||||||| ||||||||||| || |||||||| ||||||||||
Sbjct 433 AAAAGAGAGCGGTATATGATCAATACGGTGAGGAAGGGTTAAAAGGGAATGTGCCACCTC 492
Query 437 CGGATGC---AGGTGGAG-CTACTTACTTCTCTACCGGGGATGGTCCAACGTCCTTCAGG 492
| |||| ||||||| || | |||||||| || || || || || | || |||||
Sbjct 493 CCAATGCTGGTGGTGGAGCCT-CATACTTCTCAACAGGAGAAGGACCTTCATCTTTCAGA 551
Query 493 TTCAACCCGAGAAATGCGGATGATATATTTGCTGAGTTCTTT-GGCTTCTCTAGCCCATT 551
||||||||||||| ||| ||||||||||| |||||||| ||| || ||||| | ||| ||
Sbjct 552 TTCAACCCGAGAAGTGCTGATGATATATTCGCTGAGTT-TTTCGGGTTCTCGACCCCGTT 610
Query 552 TGGCGGCGGAAGAGGTGGTACA-AGATTCTCTAGCAGCATGTTTGGTGATAATATGTTTG 610
||| || || | || || || |||||| ||||| |||||||||||||| |||||| |
Sbjct 611 TGGTGGTGGTGGTGGAGG-GCAGAGATTCGCTAGCCGCATGTTTGGTGATGATATGTATA 669
Query 611 CTTCTTTCGGCGAAGGAGGAGGCGGTGG-TG-G---TG-----GC-T---C--GAT--GC 652
| ||||| || ||||||| ||| ||||| | | || | | | || |
Sbjct 670 CCTCTTTTGGTGAAGGAGCAGGTGGTGGAGGAGCTATGCATCATCATCACCATCATCATC 729
Query 653 ATCACGGTGGAGCTAGGAAGGCT-GCTCCTATCGAAAACAAGTTGCCTTGTAGCCTTGAA 711
||||||||| ||||||||| | | ||||||||||| ||||||||||||||||||||||||
Sbjct 730 ATCACGGTGCAGCTAGGAAAG-TGGCTCCTATCGAGAACAAGTTGCCTTGTAGCCTTGAA 788
Query 712 GATCTTTACAAAGGAACCACCAAAAAGATGAGGATTTCTAGGGAGATTGCT-GATGTCAG 770
||||| ||||||||||| ||||| ||||||| ||| || |||||||||| | ||||||||
Sbjct 789 GATCTCTACAAAGGAACTACCAAGAAGATGAAGATCTCCAGGGAGATTG-TAGATGTCAG 847
Query 771 TGGCAAGACGATGCAGGTGGAAGAGATTTTGACCATTG-ATGTGAAACCAGGATGGAAGA 829
|||||| | ||||| |||||||||||| | || |||| | |||||||| || |||||||
Sbjct 848 CGGCAAGGCAATGCAAGTGGAAGAGATTCTAACGATTGGA-GTGAAACCCGGGTGGAAGA 906
Query 830 AAGGCACAAAGATCACGTTCCCAGAGAAAGGCAATGAGCAACCCGGTGTGATTCCAGCGG 889
|||||||||||||||| ||||||||||||||||||||||| || ||||||||||||||||
Sbjct 907 AAGGCACAAAGATCACATTCCCAGAGAAAGGCAATGAGCATCCAGGTGTGATTCCAGCGG 966
Query 890 ATTTAGTCTTCATAATCGACGAGAAGCCTCACCCGGT-TTTCACTCGAGAGGGTAACGAC 948
|| |||||||||| || |||||||| || || || || ||| || || ||||| ||||||
Sbjct 967 ATCTAGTCTTCATCATTGACGAGAAACCCCATCCAGTGTTT-ACCCGTGAGGGCAACGAC 1025
Query 949 CTCATAGTCACACAGAA-GATCTCACTTGTTGAGGCCTTGACTGGTTACACAGTGAACCT 1007
| || ||||||||||| | ||||||| | ||| ||||| || || ||||| | ||| |
Sbjct 1026 TTGATTGTCACACAGAAAG-TCTCACTAGCTGATGCCTTAACAGGCTACACTGCAAACAT 1084
Query 1008 GACTACTCTTGATGGTCGGAGACTGACAATTCC-AGTCACCAACGTGGTCCATCCCGAGT 1066
|| || ||||||||||| | ||| ||||| || | |||| |||||| ||||||| ||||
Sbjct 1085 AACGACCCTTGATGGTCGTACACTTACAATCCCGA-TCACAAACGTGATCCATCCAGAGT 1143
Query 1067 ACGAGGAAGTGGTACCGAAGGAAGGGA-TGCCA-TTGCAAAAAGACCAGACTAAGAGAGG 1124
| || || ||||| || || || |||| ||||| || |||||||| ||||| |||| |||
Sbjct 1144 ATGAAGAGGTGGTTCCTAAAGA-GGGAATGCCACTT-CAAAAAGATCAGACGAAGAAAGG 1201
Query 1125 TAACTTGAGGATCAAATTTAACATCAAGTTCCCTA-CAAGGTTAACCT-CAGAGCAGAA 1181
||||| |||||||| || || |||||||| || | |||| ||||| | |||| |||||
Sbjct 1202 GAACTTAAGGATCAAGTTCAATATCAAGTTTCC-AGCAAGATTAAC-TGCAGAACAGAA 1258
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 53554884470
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5