BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G20570.2
Length=1673
Score E
Sequences producing significant alignments: (Bits) Value
Ahg480887 jgi|Araly1|480887|fgenesh2_kg.3__3588__AT2G20570.1 1399 0.0
> Ahg480887 jgi|Araly1|480887|fgenesh2_kg.3__3588__AT2G20570.1
Length=1576
Score = 1399 bits (757), Expect = 0.0
Identities = 916/986 (93%), Gaps = 37/986 (4%)
Strand=Plus/Plus
Query 642 GTGGATTGGACACCAGAGCTACACAGGAGATTCGTGGAGGCAGTGGAACAGTTAGGAGTG 701
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 590 GTGGATTGGACACCAGAGCTACACAGGAGATTCGTGGAGGCAGTGGAACAGTTAGGAGTG 649
Query 702 GACAAAGCTGTTCCTTCTCGAATTCTGGAGCTTATGGGAGTCCATTGTCTCACTCGTCAC 761
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 650 GACAAAGCTGTTCCTTCTCGAATTCTGGAGCTTATGGGAGTCCATTGTCTCACTCGTCAC 709
Query 762 AACGTTGCTAGTCACCTCCAAAAATATAGGTCTCATCGGAAACATTTGCTAGCTCGTGAG 821
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 710 AACGTTGCTAGTCACCTCCAAAAATATAGGTCTCATCGGAAACATTTGCTAGCTCGTGAG 769
Query 822 GCCGAAGCGGCTAATTGGACACGCAAAAGGCATATCTATGGAGTAGACACCGGTGCTAAT 881
||||||||||||||||||||||| ||||||||||||||||||||||||||||| | ||||
Sbjct 770 GCCGAAGCGGCTAATTGGACACGTAAAAGGCATATCTATGGAGTAGACACCGGAGGTAAT 829
Query 882 CTTAATGGTCGGACTAAAAATGGATGGCTTGCACCGGcacccactctcgggtttccacca 941
|||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 830 ATTAATGGTCGGAGTAAAAATGGATGGCTTGCACCGGCACCCACTCTCGGGTTT------ 883
Query 942 ccaccacccgtggctgttgcaccgccacctgtccaccaccaTCATTTTAGGCCCCTGCAT 1001
|||||| | | | ||||||||||| |||||||||||||| ||| |||||
Sbjct 884 CCACCA--C----C---T------CCACCTGTCCATCACCATCATTTTAGACCCTTGCAT 928
Query 1002 GTGTGGGGACATCCCACGGTTGATCAGTCCATTATGCCGCATGTGTGGCCCAAACACTTA 1061
|||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||
Sbjct 929 GTGTGGGGACATCCCACGGTTGATCAGTCCATCATGCCGCATGTGTGGCCAAAACACTTA 988
Query 1062 CCTCCGCCTTCTACCGCCATGCCTAATCCGCCGTTTTGGGTCTCCGATTCTCCCTATTGG 1121
||||| |||||||||| |||||||||||||||||||||||||||||||||||| ||||||
Sbjct 989 CCTCCACCTTCTACCGTCATGCCTAATCCGCCGTTTTGGGTCTCCGATTCTCCATATTGG 1048
Query 1122 CATCCAATGCATAACGGGACGACTCCGTATTTACCGACCGTAGCTACGAGATTTAGAGCA 1181
|||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||
Sbjct 1049 CATCCAATGCATAACGGGGCGACTCCGTATTTGCCGACCGTAGCTACGAGATTTAGAGCA 1108
Query 1182 CCGCCAGTTGCCGGAATCCCGCATGCTCTGCCGCCGCATCACACGA-TGTACAAACCAAA 1240
||||| |||||||||||||| |||||||||||||| |||||||| | |||||||||||||
Sbjct 1109 CCGCCGGTTGCCGGAATCCCACATGCTCTGCCGCCACATCACAC-AGTGTACAAACCAAA 1167
Query 1241 TCTTGGATTTGGTGGTGCTCGTCCTCCGGTAGACTTACATCCGTCAAAAGAGAGCGTGGA 1300
|| ||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1168 TCATGGCTTTGGTGGTGCTCGTCCTCCGGTGGACTTACATCCGTCAAAAGAGAGCGTGGA 1227
Query 1301 TGCAGCCATAGGAGATGTATTGACGAGGCCATGGCTGCCACTTCCGTTGGGATTAAATCC 1360
||||||||||||||||||||| |||||||||||||||||||||||||||||||| || ||
Sbjct 1228 TGCAGCCATAGGAGATGTATTAACGAGGCCATGGCTGCCACTTCCGTTGGGATTGAAGCC 1287
Query 1361 GCCGGCTGTTGACGGTGTTATGACAGAGCTTCACCGTCACGGTGTCTCTGAGGTTCCTCC 1420
||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||
Sbjct 1288 ACCGGCTGTTGACGGTGTTATGACGGAGCTTCACCGTCACGGTGTCTCCGAGGTTCCTCC 1347
Query 1421 GACCGCGTCTTGTGCCTGAAACGCACAAGATCCGTAGGCAAGCGAGAACCAAACAAAAAT 1480
||| ||||||||||||||||||||||||| |||||||||||| ||||||||||||| |
Sbjct 1348 GACAGCGTCTTGTGCCTGAAACGCACAAGCGCCGTAGGCAAGCC-GAACCAAACAAAA-T 1405
Query 1481 TCGACGACATGTCTTTCAATTATTGTACTTTTATTTTTCCAAGGGTTGTTTTTGTTTT-- 1538
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1406 TCGACGACATGTCTTTCAATTATTGTACCTTTATTTTTCCAAGGGTTGTTTTTGTTTTTT 1465
Query 1539 -GACCCTTGTTG--TGTTAAGAGTT-A----CTCTTTACTTAATCGTCCCATGTGACTAA 1590
||||||||||| |||| |||||| | |||||||||||||||||||||||||||||
Sbjct 1466 TGACCCTTGTTGAGTGTTGAGAGTTTAGGGTCTCTTTACTTAATCGTCCCATGTGACTAA 1525
Query 1591 TAAGGAGACCCTTTTCATATGTATCT 1616
||||||| || |||||||||||||||
Sbjct 1526 TAAGGAG-CC-TTTTCATATGTATCT 1549
Score = 870 bits (471), Expect = 0.0
Identities = 559/599 (93%), Gaps = 16/599 (3%)
Strand=Plus/Plus
Query 1 GAAGAAAGAGACTTACTTTGGATATCAAAACATGTCTTGCTCTCTATTCTAATTAAGTCT 60
|||||||||||||||||||||||||| |||||||||| ||||||||||| |||||||
Sbjct 1 GAAGAAAGAGACTTACTTTGGATATC-AAACATGTCTAGCTCTCTATTC----TAAGTCT 55
Query 61 AGCCTATCTACAACATACATAAA---C-CTCTATCTACGATTATATTTGGATCTACAAGT 116
| |||||||| |||||||||||| | |||| ||| |||||||||||||||||||||||
Sbjct 56 ACCCTATCTATAACATACATAAATCTCTCTCTCTCTCCGATTATATTTGGATCTACAAGT 115
Query 117 GAAGATTGATCGATGTTAGCTCTGTCTCCGGCGACAAGAGATGGTTGCGACGGAGCGTCA 176
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 116 GAAGATTGATCGATGTTAGCTCTGTCTCCGGCGACAAGAGATGGTTGCGAGGGAGCGTCA 175
Query 177 GAGTTTCTTGATACGTCGTGTGGATTCACGATTATAAACCCGGAGGAGGAGGAGGAGTTT 236
|||||||||||||| ||||||||||||||||| | | ||||||||||||||| ||||||
Sbjct 176 GAGTTTCTTGATACATCGTGTGGATTCACGATCA-A--CCCGGAGGAGGAGGATGAGTTT 232
Query 237 CCGGA-TTTCGCTGACCACGGTGATCTTCTTGACATCATTGACTTCGACGATATATTCGG 295
||||| ||| ||||||||||| ||||||||||||||||| ||||||||||||||||||||
Sbjct 233 CCGGACTTT-GCTGACCACGGAGATCTTCTTGACATCATCGACTTCGACGATATATTCGG 291
Query 296 TGTGGCCGGAGATGTGCTTCCTGACTTGGAGATCGACCCTGAGATCTTATCCGGGGATTT 355
||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 292 TGTCGCCGGAGATGTGCTTCCTGACTTGGAGATCGACCCCGAGATCTTATCCGGGGATTT 351
Query 356 CTCCAATCACATGAACGCTTCTTCAACGATTACTACGACGTCGGATAAGACTGATAGTCA 415
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 352 CTCTGATCACATGAACGCTTCTTCAACGATTACTACGACGTCGGATAAGACTGATAGTCA 411
Query 416 AGGGGAGACTA-CTAAGGGTAGTTCGGGGAAAGGTGAAGAAGTCGTAAGCAAAAGAGACG 474
||||||||||| | ||| ||| ||| ||||||||||||||||| ||||||||||||||||
Sbjct 412 AGGGGAGACTAAC-AAGAGTATTTCAGGGAAAGGTGAAGAAGTTGTAAGCAAAAGAGACG 470
Query 475 ATGTTGCGGCGGAGACGGTGACTTATGACGGTGACAGTGACCGGAAAAGGAAGTATTCCT 534
||| ||||||||||||||||||||||||| |||| ||||||||||||||||||||||| |
Sbjct 471 ATGCTGCGGCGGAGACGGTGACTTATGACCGTGAAAGTGACCGGAAAAGGAAGTATTCGT 530
Query 535 CTTCAGCTTCTTCCAAGAACAATCGGATCAGTAACAACGAAGGGAAGAGAAAGGTGAAG 593
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 531 CTTCAGCTTCTTCCAAGAACAATCGGATCAGTAACAACGAAGGGAAGCGAAAGGTGAAG 589
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 62734633515
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5