BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G20670.1
Length=1250
Score E
Sequences producing significant alignments: (Bits) Value
Ahg480901 jgi|Araly1|480901|fgenesh2_kg.3__3602__AT2G20670.1 1456 0.0
Ahg944713 jgi|Araly1|944713|scaffold_700942.1 508 3e-143
> Ahg480901 jgi|Araly1|480901|fgenesh2_kg.3__3602__AT2G20670.1
Length=955
Score = 1456 bits (788), Expect = 0.0
Identities = 903/958 (94%), Gaps = 10/958 (1%)
Strand=Plus/Plus
Query 53 AAAAACTCCGATGGATCGGCAAAATTCCGATGACATCATGAGATTTCTCGATGGAATGGC 112
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 AAAAACTCCGATGGATCGGCAAAATTCCGATGACATCATGAGATTTCTCGATGGAATGGC 60
Query 113 TAGCTCCGACGACGTTCTTTTCGGTTTTCTTGACGAAGGAAACCAGTCACCGGAAGA--T 170
|||||||||||| ||||||||||||||||| |||||||||||||||||||||||||| |
Sbjct 61 TAGCTCCGACGATGTTCTTTTCGGTTTTCTCGACGAAGGAAACCAGTCACCGGAAGATTT 120
Query 171 -T-T--CTCCGTAAACCTCAACGCCGGCGAAGATGACGGTGACGAAGACGACAATAATAA 226
| | ||||| |||||||| |||||||| ||||||||| ||||||||||||||||||||
Sbjct 121 CTCTGACTCCGCAAACCTCATCGCCGGCGGAGATGACGGCGACGAAGACGACAATAATAA 180
Query 227 CAATTCTGAAGATAACAAAGCTTTTTGGCAGGAACACGAACAACTTCTTCAGGGGACACT 286
||||||||||| ||||||||||||||||| ||||| |||||||||||||||||||||||
Sbjct 181 TAATTCTGAAGAAAACAAAGCTTTTTGGCAAGAACAAGAACAACTTCTTCAGGGGACACT 240
Query 287 GTATAGGACAAGTTCCATTGAGACAAAGATTAGACAAGCTACAAAAGAAGCGTTGAAACA 346
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 241 GTATAGGACAAGTTCCATTGAGACAAAGATTAGACAAGCTACGAAAGAAGCGTTGAAACA 300
Query 347 AGTTAAATCTAAGGGTCTTTATTGTGTTTGCCGGCGACCAGTGGACGGCGGTTGCCGGAG 406
||||||||| || |||||| |||||||||||||||||||||||||||||||||| |||||
Sbjct 301 AGTTAAATCAAAAGGTCTTAATTGTGTTTGCCGGCGACCAGTGGACGGCGGTTGTCGGAG 360
Query 407 TTGCTTACGTGGCGAAATCTCTAGACACCTAAGAGATGTCGCCGGCTACGATTGCGTCAT 466
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 361 TTGCTTACGTGGCGAAATCTCTAGACACCTCAGAGATGTCGCCGGCTACGATTGCGTCAT 420
Query 467 CTCTAAATCTAAATGGAGAAGTTGTCAAGACATCCCTGCAGGGGAACACGAATTTATAGA 526
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 CTCCAAATCTAAATGGAGAAGTTGTCAAGACATCCCTGCAGGGGAACACGAATTTATAGA 480
Query 527 GATTGTGGACCGATCGGGTTCAAAGAAAAGCGAGATGCGAGTGGTGATTGAGTTATCATT 586
||| ||||||||||||||||| |||||| ||||||||||||||||||| |||||||||||
Sbjct 481 GATCGTGGACCGATCGGGTTCGAAGAAAGGCGAGATGCGAGTGGTGATCGAGTTATCATT 540
Query 587 TAGGGCAGAGTTTGAGATTGCAAAAGGCAGTGAAGAGTACAAAAGACTTATCAGTCGATT 646
||||||||||||||||||||||||||| |||||||||||||||||||| | ||| |||||
Sbjct 541 TAGGGCAGAGTTTGAGATTGCAAAAGGTAGTGAAGAGTACAAAAGACTAACCAGCCGATT 600
Query 647 GCCTGAGGTTTACGTCGGGAAAACCGAGAGGCTTCGATCTCTGATAAAGATATTGTGCAT 706
||| |||||||| ||||| ||||||||||||||||| |||||||| ||||||||||||||
Sbjct 601 GCCGGAGGTTTATGTCGGAAAAACCGAGAGGCTTCGTTCTCTGATCAAGATATTGTGCAT 660
Query 707 AGCGGGAAAGAAATGCTTGAGAGACAAGAAAATGCATATGGCTCCTTGGAGAAAACACAA 766
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 661 CGCGGGAAAGAAATGCTTGAGAGACAAGAAAATGCATATGGCTCCTTGGAGAAAACACAA 720
Query 767 GTACATGCAAGCCAAGTGGCTTGGCACATGTGATCGATCTAGCTCCTTGGAAGCTTCGGT 826
||||||||||||||||||| |||| ||||||||||||||||||||||||||||| ||||
Sbjct 721 GTACATGCAAGCCAAGTGGGTTGGGACATGTGATCGATCTAGCTCCTTGGAAGCGGCGGT 780
Query 827 TTCCGAGGCCATGGAGCCAGAAAATTGGGTGCCGGTGGCGAAGCCTAGGGTTTCTATGTT 886
||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 781 TTCCGAGGCGATGGAGCCAGAGAATTGGGTGCCGGTGGCGAAGCCTAGGGTTTCTATGTT 840
Query 887 GAACTATGATGGTCTCTTAGGTGGTTTCTCTGCCGGTCCGGCCACTGT-AGCGGTCGTGT 945
|||||| ||||||||||||||| ||||||| ||||||||||||| ||| | |||||||||
Sbjct 841 GAACTACGATGGTCTCTTAGGTAGTTTCTCCGCCGGTCCGGCCATTGTTA-CGGTCGTGT 899
Query 946 GATATTTTTGTACTATGtttttttGATGACTTGTAATTATTAAGTGATTAGGGTGAGT 1003
|||||| | || || |||||||| ||||||||||||||||||| ||||||||||||||
Sbjct 900 GATATTGT-GTGCTGTGTTTTTT-GATGACTTGTAATTATTAATTGATTAGGGTGAGT 955
> Ahg944713 jgi|Araly1|944713|scaffold_700942.1
Length=904
Score = 508 bits (275), Expect = 3e-143
Identities = 599/752 (80%), Gaps = 36/752 (5%)
Strand=Plus/Plus
Query 63 ATGGATCGGCAAAATTCCGATGACATCATGAGATTTCTCGATGGAATGGCTAGCTCCGAC 122
||||||||||||||||||||||||||||||| ||||||||| || |||||||||||||||
Sbjct 21 ATGGATCGGCAAAATTCCGATGACATCATGAAATTTCTCGACGGCATGGCTAGCTCCGAC 80
Query 123 GACGTTCTTTTCGGTTTTCTTGACGAAGGAAACCAGTCACCGGAAGATTTCTCCGTAAAC 182
|| |||||||| |||||||| |||| |||||| || |||||||| |||| | || |
Sbjct 81 GATGTTCTTTTTGGTTTTCTCGACGGAGGAAATCACTCACCGGAGGATTA-T----AA-C 134
Query 183 CTCAACGCCGGCGAAGA-T--GACGGTGACGAA-GACGACAATA-ATAACAATTCTGAAG 237
|| ||||||||| || | || | |||| || || ||| | || ||||| ||||
Sbjct 135 TTCGCCGCCGGCGACGAATCCGAAGTTGAC-AACGA-GACCACCGATTGTAATTCAGAAG 192
Query 238 ATAACA-AAGCTTTTTGGCAGGAACACGAACAACTTCTTCAGGGGACACTGTATAGGACA 296
| |||| || |||| |||| ||||| ||||||||||| |||| |||||| |||||||||
Sbjct 193 AGAACAGAAAATTTT-GGCAAGAACAAGAACAACTTCTCCAGGCGACACTATATAGGACA 251
Query 297 AGTTCCATTGAGACAAAGATTAGACAAGCTACAAAAGAAGCGTTGAAACAAGTTAAATCT 356
||||| |||||||||||||| |||||||| || || |||||||||||| ||||| |||
Sbjct 252 AGTTCAATTGAGACAAAGATAAGACAAGCAACCAAGGAAGCGTTGAAAGTAGTTAGATCA 311
Query 357 AAGGGTCTT--TATTGTGTTTGCCGGCGACCAGTGGACGG-CGGTTGCCGGAGTTGCTTA 413
|||||| || ||| ||||||||||| |||| || || | |||||| || || || |||
Sbjct 312 AAGGGT-TTGGTAT-GTGTTTGCCGGAGACCGGTT-ACCGACGGTTGTCGTAGCTGTTTA 368
Query 414 CGTGGCGAAATCTCTAGACACCTAAGAGATGTCGCCGGCTACGATTGCGTCATCTCTAAA 473
|| |||||| | ||| | | ||| |||| | | ||||| ||||||| ||| || |||
Sbjct 369 CGCGGCGAAGTGTCTCGCCGCCTCCGAGAAG-CT--GGCTATGATTGCGCCATTTCCAAA 425
Query 474 TCTAAATGGAGAAGTTGTCAAGACATCCCTGCAGGGGAACACGAAT-TTATAGAGATTGT 532
|| || |||||||| | ||| || ||||||||||| || || |||| || | ||| | ||
Sbjct 426 TCCAAGTGGAGAAGCTCTCATGAGATCCCTGCAGGTGAGCATGAATATT-TGGAGGTCGT 484
Query 533 GGACCGATCGGGTTCAAAGAAAAGCGAGATGCGAGTGGTGATTGAGTTATCATTTAGGGC 592
|||| ||||| |||||||||| ||||||| || |||||||| || ||| ||||||||
Sbjct 485 GGACAAATCGGTTTCAAAGAAAGGCGAGATCCGGGTGGTGATCGAACTATGTTTTAGGGC 544
Query 593 AGAGTTTGAGATTGCAAAAGGCAGTGAAGAGTACAAAAGACTTATCAG--TCGATTGCCT 650
||||||||||| || | ||| ||||| |||||||| |||| ||| | | | || ||
Sbjct 545 GGAGTTTGAGATGGCGAGAGGTAGTGACGAGTACAAGCGACTCATCGGAAT-G-TTACCG 602
Query 651 GAGGTTTACGTCGGGAAAACCGAGAGGCTTCGATC-TCTGATAAAGATATTGTGCATAGC 709
|| || |||||||||||||| |||||||| ||| | ||||||| |||||||||| ||
Sbjct 603 GAAGTGTACGTCGGGAAAACGGAGAGGCTAAAATCAT-TGATAAAAATATTGTGCACCGC 661
Query 710 GG-GAAAGAAATGCT-TGAGAGACAAGAAAATGCATATGGCTCCTTGGAGAAAACACAAG 767
|| ||| ||| || | ||| ||||||||| ||||| |||| |||||||||||||||||||
Sbjct 662 GGCGAA-GAAGTG-TATGAAAGACAAGAAGATGCACATGGGTCCTTGGAGAAAACACAAG 719
Query 768 TACATGCAAGCCAAGTGGCTTGGCACATGTGA 799
|||||||| || || |||||||| || |||||
Sbjct 720 TACATGCAGGCGAAATGGCTTGGAACGTGTGA 751
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 46700573325
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5