BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT2G20720.1 Length=2213 Score E Sequences producing significant alignments: (Bits) Value Ahg319921 jgi|Araly1|319921|fgenesh1_pm.C_scaffold_3002937 1363 0.0 Ahg937864 jgi|Araly1|937864|scaffold_502055.1 80.5 5e-14 > Ahg319921 jgi|Araly1|319921|fgenesh1_pm.C_scaffold_3002937 Length=1275 Score = 1363 bits (738), Expect = 0.0 Identities = 835/882 (95%), Gaps = 6/882 (1%) Strand=Plus/Plus Query 1148 GCTGAAGATCACGACATGGTGGTGAAGCTTCTTGGCGAGATGGACGAGAAAAAGATGCAA 1207 ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 397 GCTGAAGATCACGACATGGTGGTGAAGCTTCTTGGTGAGATGGACGAGAAAAAGATGCAA 456 Query 1208 CCCCAAGGACTATGC-TTTGTCAAGCTCTTGACTTCTTACTCTATGGCATCTG-TTGTAG 1265 ||||||||||| | | |||| |||||| || ||||||||||| |||||||||| || ||| Sbjct 457 CCCCAAGGACTGT-CTTTTGACAAGCTTTTAACTTCTTACTCAATGGCATCTGATT-TAG 514 Query 1266 ATGTACAAGGTGTGGAGAAGTTTTTGAGCAAGTGGGAGGTGATGATTCAGGACAAATGGA 1325 |||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 515 ATGTACAAGGAATGGAGAAGTTTTTGAGCAAGTGGGAGGTGATGATTCAGGAAAAATGGA 574 Query 1326 CCACATTCTACTTTCCAGGATTGGTCTACATACGAGCAGGATTTATGGAAAAGGGTTTAG 1385 |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct 575 CCACATTCTACTTTCCAGGATTGGTCTACATACGAGCAGGGTTTATGGAAAAGGGTTTAG 634 Query 1386 CTTTGCTTCGTAGGTCAGAGACATTTGTTGATGACGGCTG-TAGAGAAATCATATATGGA 1444 |||||||||||||||||||| ||| ||||| ||||||| | |||||||||||| |||||| Sbjct 635 CTTTGCTTCGTAGGTCAGAGCCATCTGTTGGTGACGGC-GCTAGAGAAATCATCTATGGA 693 Query 1445 TGTCTCATGACTGTTTATTGTAACGAGAATCTAACAGAGGATGTTTACCGTCTCTGGAAC 1504 ||||||||||||| |||||||| ||||||||||||||||||||| ||||||||||||||| Sbjct 694 TGTCTCATGACTGCTTATTGTAGCGAGAATCTAACAGAGGATGTGTACCGTCTCTGGAAC 753 Query 1505 TTGGCTAAGGACTATGGGATATCCTTTGACAGTTCCAGATGTTCTGATATCGTCAAGGCG 1564 ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct 754 TTGGCTAAGGACTATGGGATATCCTTTGACAGTTCCAAATGTTCTGATATCGTCAAGGCG 813 Query 1565 TTTACGAAGAAGGGTGATCTCGATGGGGTTATGGAAGAGTGGAATGAGTGTCCCAATCTT 1624 ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| || Sbjct 814 TTTACGAAGAAGGGTGATCTCGATGAGGTTATGGAAGAGTGGAATGAGTGTCCCAATATT 873 Query 1625 GATCTGATGGACTTTGGTCTCCAACATAGATGCGTGAAGGAGGAGGCTGAGAAGGTTGTT 1684 ||||||||||| |||||||||||||||||||| ||||| |||||||||||||| |||| Sbjct 874 GATCTGATGGATTTTGGTCTCCAACATAGATGTATGAAGAAGGAGGCTGAGAAGATTGTG 933 Query 1685 GATATGCTTGGGAAGAAGGAGAGCAAATGGGAGAGTTTGGCTCACAAGGTTAATACTTTG 1744 |||||| |||||||||||||||||||||||||||||||||| ||||||||||||| |||| Sbjct 934 GATATGATTGGGAAGAAGGAGAGCAAATGGGAGAGTTTGGCACACAAGGTTAATAATTTG 993 Query 1745 GTGGAGGATGAAGATGCTAAAGAAGAGGAGAGGAGGAAGAGAGTGGCAGAGGCCATGGAA 1804 |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 994 GTGGAGGATGAAGATGATAAAGAAGAGGAGAGGAGGAAGAGAGTGGCAGAGGCCATGGAG 1053 Query 1805 GGGAGGCTGCATGACCGCTGGAACCCAAAGAACAGCATGGCTCTCTCCGCTTTTGCCTGC 1864 |||||||||||||||| ||||||||||||| |||||||||||| ||||||| ||||||| Sbjct 1054 GGGAGGCTGCATGACCAATGGAACCCAAAGAGCAGCATGGCTCTGTCCGCTTATGCCTGC 1113 Query 1865 GTGCAATATGTGGAGGGTCGGAGAGACATGGAGAGTACAGCCGACATTCTGAGACTTCTG 1924 |||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||| Sbjct 1114 GTGCAATATGTGGAGGGTCGGAGAGACATGGAGAGTACAGCCAACATTCTGAGACTCCTG 1173 Query 1925 AATAAGCGAGAGCAAGTGTCGCATGCAATGGACAAAAACCGATTGAGCCTGAAGATGGTG 1984 || |||||||||||||||| |||||||||||||||| ||||||||||||||||||||||| Sbjct 1174 AACAAGCGAGAGCAAGTGTTGCATGCAATGGACAAAGACCGATTGAGCCTGAAGATGGTG 1233 Query 1985 GAGGCAATGAGAGGAGGAGGATACGTTGGTGGAGATGATTAA 2026 |||||||||||||||||||||||||||||||||||||||||| Sbjct 1234 GAGGCAATGAGAGGAGGAGGATACGTTGGTGGAGATGATTAA 1275 Score = 595 bits (322), Expect = 4e-169 Identities = 372/397 (94%), Gaps = 0/397 (0%) Strand=Plus/Plus Query 590 ATGAAGCATCTTCTCCGACAACAATTCAGTAATTTCTTCTGGATCCTTCCTTGCAGACGT 649 ||||||||||||||||| ||||||||||||||||| ||||||| ||||||||||||||| Sbjct 1 ATGAAGCATCTTCTCCGGCAACAATTCAGTAATTTTTTCTGGAAACTTCCTTGCAGACGT 60 Query 650 TCCTTCGTTCATTTCCCCAAAACCATTCCTTCGCCGGAGCTCATTAATGACACTCTCAAG 709 ||||||||||||||||| |||||||||||||| |||||||||||| |||||||||||||| Sbjct 61 TCCTTCGTTCATTTCCCTAAAACCATTCCTTCACCGGAGCTCATTGATGACACTCTCAAG 120 Query 710 CGTCGGATCCAGAGAGTCCAAGATTCGTCAGTCTCCATCACTCCGTTGCTCCGAGAATGG 769 ||||||||| || |||||||||||||| | |||||||||||||||||||||||||||||| Sbjct 121 CGTCGGATCGAGCGAGTCCAAGATTCGACGGTCTCCATCACTCCGTTGCTCCGAGAATGG 180 Query 770 TGCCAACGCGGAAATCAAACGGGACTTTCAAAACTCAGGAGCATCATTACCTCTCTTCAC 829 ||| |||||||||||||||||| ||||||| ||||||| |||||||| |||||||||||| Sbjct 181 TGCGAACGCGGAAATCAAACGGCACTTTCAGAACTCAGAAGCATCATCACCTCTCTTCAC 240 Query 830 AGATCCAATCGCTTCTCTCACGCTCTCCAGGTATCGGATTGGATGATTGAACAAAAAGCC 889 |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 241 AGATCCAATCGCTTCTTTCACGCTCTCCAGGTATCGGATTGGATGATTGAACAAAAAGCT 300 Query 890 TATAAGCTGAGTTCAATGGATTTTGAGCGACGACTTTTCTTGGCTGCTAAAGTTGGTGGT 949 || ||||||||||| ||||||||||||||||| |||| |||| |||| |||||| ||||| Sbjct 301 TACAAGCTGAGTTCGATGGATTTTGAGCGACGGCTTTACTTGACTGCAAAAGTTTGTGGT 360 Query 950 GTGGAAGAAGCGGCTAAGTTCTTCGAGACTGTTCCTG 986 ||||||||||||||||||||||||||||||||||||| Sbjct 361 GTGGAAGAAGCGGCTAAGTTCTTCGAGACTGTTCCTG 397 > Ahg937864 jgi|Araly1|937864|scaffold_502055.1 Length=1031 Score = 80.5 bits (43), Expect = 5e-14 Identities = 118/153 (77%), Gaps = 10/153 (7%) Strand=Plus/Plus Query 1868 CAATATGTGGAGGGTCGGAGAGACATGGAGAGTACAGCCGACATTCTGAGACTT-CTGAA 1926 |||||||||||||| | |||||||| |||||||||| || || ||||| || || Sbjct 856 CAATATGTGGAGGGCCATAGAGACATTGAGAGTACAGTTGATGTTTTGAGA-TTGTTGGG 914 Query 1927 TAAGCGAGAG---CAAGTGTCGCATGCAATGGACAAAAACCGATTGAGCCTGAAGA-TGG 1982 ||||| ||| |||| | || | |||| || |||||||||| ||| | ||| Sbjct 915 GAAGCGTGAGTCACAAG-AT-GC-TATTATGGGTGAAGACCGATTGAGTAGGAA-ATTGG 970 Query 1983 TGGAGGCAATGAGAGGAGGAGGATACGTTGGTG 2015 ||||||||||||||||||||||||||||||||| Sbjct 971 TGGAGGCAATGAGAGGAGGAGGATACGTTGGTG 1003 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 83303365815 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5