BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT2G20820.2 Length=597 Score E Sequences producing significant alignments: (Bits) Value Ahg931968 jgi|Araly1|931968|scaffold_304425.1 318 2e-86 > Ahg931968 jgi|Araly1|931968|scaffold_304425.1 Length=325 Score = 318 bits (172), Expect = 2e-86 Identities = 194/204 (95%), Gaps = 3/204 (1%) Strand=Plus/Plus Query 82 TAAATCAAAAGTCGAGATCGATGGCGTCCTTCGCTCGCCGTGCCATGAGCTTAG--C-TC 138 ||||||| |||||||||||||||||||||||||||||||| ||||||||||||| | || Sbjct 1 TAAATCAGAAGTCGAGATCGATGGCGTCCTTCGCTCGCCGAGCCATGAGCTTAGCTCATC 60 Query 139 AGATCCCATCTGCTCGTATTTCCTCTGGAGCCGCTTCTATTGGTCAGCGTCGTTGCCTCG 198 ||||||||||||||||| ||||| ||||||| |||||||||||||||||||||| |||| Sbjct 61 AGATCCCATCTGCTCGTGTTTCCGCTGGAGCTTCTTCTATTGGTCAGCGTCGTTGTCTCG 120 Query 199 CCGGCGCCGCTGATCACCATGGATCTACCAAGGTTGACTTCTGGAAACAGCCCACGAACC 258 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 121 CCGGCGCCGCTGATCACCATGGATCTACCAAGGTTGACTTCTGGAAACAGCCCACGAACC 180 Query 259 CAGGAAACTGGAAAGAGGAGCATT 282 |||||||||||||||||||||||| Sbjct 181 CAGGAAACTGGAAAGAGGAGCATT 204 Score = 122 bits (66), Expect = 2e-27 Identities = 75/79 (95%), Gaps = 2/79 (3%) Strand=Plus/Plus Query 282 TGGATACAAGCTCGCCACTGGGGGaaaaaaaGA-GACGCCTGTGGAGAGTACACAATGAG 340 |||||||||||||||||| |||||||||||||| || |||||| |||||||||||||||| Sbjct 248 TGGATACAAGCTCGCCACCGGGGGAAAAAAAGAGGA-GCCTGTAGAGAGTACACAATGAG 306 Query 341 TTTCATTGTCACCAGGAAG 359 ||||||||||||||||||| Sbjct 307 TTTCATTGTCACCAGGAAG 325 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 21863152497 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5