BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT2G20820.2

Length=597
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg931968 jgi|Araly1|931968|scaffold_304425.1                        318    2e-86


> Ahg931968 jgi|Araly1|931968|scaffold_304425.1
Length=325

 Score =  318 bits (172),  Expect = 2e-86
 Identities = 194/204 (95%), Gaps = 3/204 (1%)
 Strand=Plus/Plus

Query  82   TAAATCAAAAGTCGAGATCGATGGCGTCCTTCGCTCGCCGTGCCATGAGCTTAG--C-TC  138
            ||||||| |||||||||||||||||||||||||||||||| |||||||||||||  | ||
Sbjct  1    TAAATCAGAAGTCGAGATCGATGGCGTCCTTCGCTCGCCGAGCCATGAGCTTAGCTCATC  60

Query  139  AGATCCCATCTGCTCGTATTTCCTCTGGAGCCGCTTCTATTGGTCAGCGTCGTTGCCTCG  198
            ||||||||||||||||| ||||| |||||||  |||||||||||||||||||||| ||||
Sbjct  61   AGATCCCATCTGCTCGTGTTTCCGCTGGAGCTTCTTCTATTGGTCAGCGTCGTTGTCTCG  120

Query  199  CCGGCGCCGCTGATCACCATGGATCTACCAAGGTTGACTTCTGGAAACAGCCCACGAACC  258
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  121  CCGGCGCCGCTGATCACCATGGATCTACCAAGGTTGACTTCTGGAAACAGCCCACGAACC  180

Query  259  CAGGAAACTGGAAAGAGGAGCATT  282
            ||||||||||||||||||||||||
Sbjct  181  CAGGAAACTGGAAAGAGGAGCATT  204


 Score =  122 bits (66),  Expect = 2e-27
 Identities = 75/79 (95%), Gaps = 2/79 (3%)
 Strand=Plus/Plus

Query  282  TGGATACAAGCTCGCCACTGGGGGaaaaaaaGA-GACGCCTGTGGAGAGTACACAATGAG  340
            |||||||||||||||||| |||||||||||||| || |||||| ||||||||||||||||
Sbjct  248  TGGATACAAGCTCGCCACCGGGGGAAAAAAAGAGGA-GCCTGTAGAGAGTACACAATGAG  306

Query  341  TTTCATTGTCACCAGGAAG  359
            |||||||||||||||||||
Sbjct  307  TTTCATTGTCACCAGGAAG  325



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 21863152497


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5