BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT2G20830.2 Length=1608 Score E Sequences producing significant alignments: (Bits) Value Ahg319935 jgi|Araly1|319935|fgenesh1_pm.C_scaffold_3002951 2050 0.0 > Ahg319935 jgi|Araly1|319935|fgenesh1_pm.C_scaffold_3002951 Length=1296 Score = 2050 bits (1110), Expect = 0.0 Identities = 1235/1297 (95%), Gaps = 2/1297 (0%) Strand=Plus/Plus Query 152 ATGAGTTCTGGTCTGAACGAAGATTTCCTCGATTGTATCGTGCGTTTAGAGGAGACACAT 211 |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1 ATGAGTTCCGGTCTGAACGAAGATTTCCTCGATTGTATCGTGCGTTTAGAGGAGACACAC 60 Query 212 GTTCAACAAGGCTTCGATGAGGGTTACGAAGAAGGTCTTGTGTCCGGTCGTGAAGACGCT 271 ||||||||||||||||||||||||||||||||||||| ||||| ||||||||||| ||| Sbjct 61 ATTCAACAAGGCTTCGATGAGGGTTACGAAGAAGGTCTCGTGTCGGGTCGTGAAGAAGCT 120 Query 272 CGTCATCTGGGTTTGAAACTCGGGTTCGAGACAGGCGAGCTGATTGGATTCTACAGAGGT 331 ||||||||||||||||||||||||||||| ||||||||||| ||||||||||||| |||| Sbjct 121 CGTCATCTGGGTTTGAAACTCGGGTTCGAAACAGGCGAGCTTATTGGATTCTACAAAGGT 180 Query 332 TGCTCTGCTCTTTGGAATTCAGCTCTCCGTATTGATCCTACACGCTTCTCTCCTCAGCTC 391 |||||||||||||||||||||||||||||||||||||| || |||||||||||||||||| Sbjct 181 TGCTCTGCTCTTTGGAATTCAGCTCTCCGTATTGATCCCACTCGCTTCTCTCCTCAGCTC 240 Query 392 CATAAGCATCTCAATGATTTCCATGTCTTGCTCGATAAAATCCCGCTTTTGGATCCCGAG 451 ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 241 CATAAGCATCTCAATGATTTCCATGTCTTGCTCGATAAATTCCCGCTTTTGGATCCCGAG 300 Query 452 GACGAAGCTAAAGACGGGATCAAGGATGATCTCAGAGTCAAATTCAGCATCATTTGTGCA 511 |||||||| ||||||||||| ||||||||||||||| ||||||||||||||||||||||| Sbjct 301 GACGAAGCCAAAGACGGGATTAAGGATGATCTCAGACTCAAATTCAGCATCATTTGTGCA 360 Query 512 TCTCTCGGCTTTTCCAAGAAACAATTTGAGTGGTCGGAGGAGATGTTGAGAGAAATGCTT 571 |||||| || |||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 361 TCTCTCAGCATTTCCAAGAAACAATTGGAGTGGTCGGAGGAGATGTTGAGAGAAATGCTT 420 Query 572 GGTTGTTGCAAGGTTTACATATCTGAAGCGCGGAATAAGACGGCCCTCGAAGCCATTGAG 631 ||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||| Sbjct 421 GGTTGTTGCAAGGTTTACATATCTGAAGCGCGGAATAAGACCGCCCTCGAAGCTATTGAG 480 Query 632 AGAGCTTTAAAGCCTTTTCCACCAGCTGCAATTGTCAACAAGTTTGAAGATGCGGCTTAT 691 |||||| ||||| ||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 481 AGAGCTGTAAAGGCTTTTCCACCAGCTGCAATCGTCAACAAGTTTGAAGATGCGGCTTAT 540 Query 692 GGCAGGGTTGGTTACACTGTTGTATCCTCGCTTGCTAACGGGTCGTCTTCTTCCTTGAAG 751 || |||||||||||||||||||||||||||||||| || ||||| ||||||||||||||| Sbjct 541 GGTAGGGTTGGTTACACTGTTGTATCCTCGCTTGCAAAAGGGTCATCTTCTTCCTTGAAG 600 Query 752 AATGCGGTGTTTGCTATGGTTAAGACTGCTCTCGACACTATCAATCTTGAGTTGCACTGT 811 ||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||| Sbjct 601 AATGCGGTGTTTGCTATGGTTAAGACTGCTCTCGATACTATCAATCTTGAGTTGCATTGT 660 Query 812 GG-ATCTCATCCCCGCCTTGGAGTGGTTGACCACATATGCTTTCACCCCTTATCTCAAAC 870 || | | ||||| || ||||||||||| |||||||||||||||||||| || |||||||| Sbjct 661 GGTACC-CATCCTCGGCTTGGAGTGGTCGACCACATATGCTTTCACCCTTTGTCTCAAAC 719 Query 871 CTCTATAGAACAAGTTTCTTCCGTCGCCAATTCCCTTGCAATGGATATCGGCTCCATTCT 930 |||||||||||||||||||||||| ||||||||| | || |||||||||||||||||||| Sbjct 720 CTCTATAGAACAAGTTTCTTCCGTGGCCAATTCCGTAGCGATGGATATCGGCTCCATTCT 779 Query 931 TCGAGTTCCTACATATCTCTATGGAGCAGCAGAAAAGGAGCAGTGCACCCTGGATTCGAT 990 |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 780 TCGAGTTCCTACATATCTCTATGGAGCAGCAGAAAAGGAGCAGTGCACGCTGGATTCGAT 839 Query 991 CAGAAGAAAGCTGGGGTACTTCAAGGCAAACAGGGAGGGACATGAATGGGCAGGTGGGTT 1050 |||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 840 CAGAAGGAAGCTGGGGTACTTCAAGGCGAACAGGGAGGGACATGAATGGGCAGGTGGGTT 899 Query 1051 TGACCTGGAGATGGTGCCACTGAAGCCAGACGCAGGGCCACAAGAGGTGAGCAAAGCCAA 1110 || |||||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 900 AGAGCTGGAGATGGTGCCGGTGAAGCCAGACGCAGGGCCACAAGAGGTGAGCAAAGCCAA 959 Query 1111 AGGGGTTGTAGCGGTTGGGGCGTGTGGGTGGGTAAGTAACTATAACGTGCCTGTCATGTC 1170 ||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||| Sbjct 960 AGGGGTTGTAGCGGTTGGGGCGTGTGGGTGGGTGAGTAACTATAATGTGCCTGTCATGTC 1019 Query 1171 AAACGATCTCAAGGCAGTGAGGAGAATAGCGAGGAAGACGAGCGAGAGAGGAGGGGGCTT 1230 ||||||||| ||||||||||||||||| ||||||||| |||||||||||||||||||||| Sbjct 1020 AAACGATCTTAAGGCAGTGAGGAGAATGGCGAGGAAGGCGAGCGAGAGAGGAGGGGGCTT 1079 Query 1231 GGCTTCAGTGCAGACAATGGCGCTGGTGCACGGGGAAGGAGTCATAGAGGTTGCCTGTAA 1290 ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 1080 GGCTTCAGTGCAGACAATGGCGCTGGTACACGGGGAAGGAGTCATAGAGGTTGCCTGTAA 1139 Query 1291 CTTGTTGAATCCAAGCCAAGTGGGGGGAGATGAAGTACAGGGACTGATCGAGAGGCTTGG 1350 |||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||| Sbjct 1140 CTTGTTGAATCCAAGCCAAGTGGGAGGAGATGAAGTTCAGGGACTGATCGAGAGGCTTGG 1199 Query 1351 CAGAGAGGAAGGTCTGCTTGTGGGAAAAGGGTATTATACGGACTATACACCTGACCAGAT 1410 |||||||||||||||||||||||||||||||||||| |||||| ||||||| |||||||| Sbjct 1200 CAGAGAGGAAGGTCTGCTTGTGGGAAAAGGGTATTACACGGACCATACACCCGACCAGAT 1259 Query 1411 CGTTGAAAGATATATGGACTTGCTCAACAATTCATAA 1447 |||| ||||||||||||||||||||| ||||||||| Sbjct 1260 CGTTCAAAGATATATGGACTTGCTCAGTAATTCATAA 1296 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 60258767590 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5