BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT2G20890.1 Length=1251 Score E Sequences producing significant alignments: (Bits) Value Ahg931982 jgi|Araly1|931982|scaffold_304439.1 1452 0.0 > Ahg931982 jgi|Araly1|931982|scaffold_304439.1 Length=947 Score = 1452 bits (786), Expect = 0.0 Identities = 896/950 (94%), Gaps = 4/950 (0%) Strand=Plus/Plus Query 95 CTCTTTCTCACTTCAATTTAGCGATGGCTGCAACTGCAATCTCTTCTCTTTCCTTCCCAG 154 ||||||||| ||||| ||| || ||||||||||||||||||||||| |||||||| |||| Sbjct 1 CTCTTTCTCTCTTCAGTTTCGCAATGGCTGCAACTGCAATCTCTTCCCTTTCCTTACCAG 60 Query 155 CTTTGGGTCAATCGGACAAGATCTCCAATTTCGCATCTTCTCGTCCTCTCGCCTCCGCAA 214 | ||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||| Sbjct 61 CGTTGGGTCAATCGGACAAGATCTCCAATTTCGCACCTTCTCGTCCTCTCGCCTCCACAA 120 Query 215 TTCGCATCTGCACAAAGTTTTCTCGCCTTTCTTTGAATTCGCGTTCCACTTCGAAATCTC 274 ||||||||||||| |||| |||||||| ||||||| ||||||||||||||||| ||||| Sbjct 121 TTCGCATCTGCACCAAGTCTTCTCGCCACTCTTTGACTTCGCGTTCCACTTCGAGATCTC 180 Query 275 TTATTCACTGCATGTCCAATGTTACCGCCGATGTGCCTCCTGTATCAGAGACAAAGTCGA 334 |||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||| Sbjct 181 TTATTCACTGCATGTCCACTGTTA---CCGATGTGCCTCCTGTATCAGAGACAAAGTCGA 237 Query 335 AATTCCTAAAAGCTTACAAGCGACCCATCCCGAGTATCTACAACACGGTTTTGCAGGAGC 394 | ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 238 ATTTCCTAAAAGCTTACAAGCGACCTATCCCGAGTATCTACAACACGGTTTTGCAGGAGC 297 Query 395 TCATTGTCCAGCAGCATTTGATGAGGTATAAGAAGACTTATCGTTATGATCCTGTTTTTG 454 ||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 298 TCATTGTACAGCAGCATTTGATGAGGTATAAGAAGACTTATCGTTACGATCCTGTTTTTG 357 Query 455 CCCTTGGATTTGTCACTGTATATGATCAGCTCATGGAAGGATATCCGAGTGATCAAGACC 514 | ||||| ||||||||||| ||||||||||||||||||||||||||||| |||||||| | Sbjct 358 CACTTGGCTTTGTCACTGTGTATGATCAGCTCATGGAAGGATATCCGAGCGATCAAGATC 417 Query 515 GAGATGCCATTTTTAAGGCTTACATTGAAGCCTTGAATGAGGATCCTAAGCAATACCGAA 574 |||||||||||||||| |||||||| ||||||||||||||||||||||| |||||||||| Sbjct 418 GAGATGCCATTTTTAAAGCTTACATAGAAGCCTTGAATGAGGATCCTAAACAATACCGAA 477 Query 575 TTGATGCTCAGAAGATGGAGGAATGGGCACGAAGTCAGACTTCTGCTTCACTAGTTGACT 634 ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 478 TTGATGCTCAGAAGATGGAGGAATGGGCAAGAAGTCAGACTTCTGCTTCACTAGTTGACT 537 Query 635 TTTCCTCTAAAGAAGGAGATATTGAAGCAGTTCTTAAGGACATTGCAGGAAGAGCTGGTA 694 ||||||||| ||||||||| ||||||||| |||||||||||||||||||||||||||| | Sbjct 538 TTTCCTCTAGAGAAGGAGAAATTGAAGCACTTCTTAAGGACATTGCAGGAAGAGCTGGGA 597 Query 695 GTAAGGAGGGGTTTAGTTACAGCAGGTTCTTCGCTGTTGGGCTCTTTCGTTTGCTTGAGC 754 |||||||||| ||||||||||| ||||||||||| ||||||||||||||||| ||||||| Sbjct 598 GTAAGGAGGGATTTAGTTACAGTAGGTTCTTCGCCGTTGGGCTCTTTCGTTTACTTGAGC 657 Query 755 TTGCAAGTGCTACTGATCCAACTGTCTTGGACAAGCTTTGTGCATCCCTAAATATCAACA 814 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 658 TTGCAAGTGCTACTGATCCAACTGTCTTGGACAAGCTTTGTGCATCCCTAAATATCAACA 717 Query 815 AGAAAAGCGTGGATCGGGACCTGGATGTGTATCGTAACCTGCTTTCAAAGCTTGTCCAAG 874 ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 718 AGAAAAGCGTGGATCGGGACCTGGATGTGTATCGTAACCTGCTGTCAAAGCTTGTCCAAG 777 Query 875 CCAAGGAATTGCTTAAGGAGTATGTCGAGAGGGAGAAGAAGAAGCAAGGAGAAAGAGCCC 934 ||||||||||||||| ||||||||||||||||||||||||||||||||| || |||||| Sbjct 778 CCAAGGAATTGCTTAGGGAGTATGTCGAGAGGGAGAAGAAGAAGCAAGGGGAGAGAGCCG 837 Query 935 AATCTCAGAAGGCTAACGAAACAATCTCCAAGTGTCTGGGAGATACTCTATATAACCCAT 994 |||| ||||||||||| |||||||||||||||||||| |||||||||||||||||||||| Sbjct 838 AATCCCAGAAGGCTAATGAAACAATCTCCAAGTGTCTTGGAGATACTCTATATAACCCAT 897 Query 995 CTTTCTTGGTTGAACGGAAATCTTAGAAAATCATTTGTGACTTCtttttt 1044 |||||||||||||| |||||| || ||||||| ||||||||| |||||| Sbjct 898 CTTTCTTGGTTGAATGGAAATAGTAAAAAATCAATTGTGACTT-TTTTTT 946 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 46738696242 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5