BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT2G20930.1

Length=678
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg932019 jgi|Araly1|932019|scaffold_400007.1                        756    0.0  


> Ahg932019 jgi|Araly1|932019|scaffold_400007.1
Length=464

 Score =  756 bits (409),  Expect = 0.0
 Identities = 447/465 (96%), Gaps = 4/465 (1%)
 Strand=Plus/Plus

Query  63   GAGATCTGC-AAGG-GAGAAGATGATCGTTTGCGTCGCCGTCGTCGGCCACCAGAACAAT  120
            ||||||||| |||| |||||||||||||| ||||||||||||||||||||||||||||||
Sbjct  1    GAGATCTGCAAAGGAGAGAAGATGATCGTATGCGTCGCCGTCGTCGGCCACCAGAACAAT  60

Query  121  CCGCTTTACATACAAAGCTTCACGGATGCTGACGATGCTCTCAAGCTCCACCACATTGTT  180
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct  61   CCGCTTTACATACAAAGCTTCACGGATGCTGACGATGCTCTCAAGCTCCACCACATCGTT  120

Query  181  CATTGCTCCCTTGATGTCATCGAAGAGCGAGTGAACAATCCGAAAAAGTCTGGTACAACA  240
            |||||||| || ||||||||||||||||||||||||||||| ||||||||||||||||| 
Sbjct  121  CATTGCTCTCTCGATGTCATCGAAGAGCGAGTGAACAATCCAAAAAAGTCTGGTACAACT  180

Query  241  CTGAACGAGGCTTTTCTTGGCTTGCTCTATCCTACTGTGAACTACAAAGTGTATGGTTAC  300
            ||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||
Sbjct  181  CTGAACGAGGCTTTTCTTGGCCTGCTCTATCCTACTGTGAACTACAAAGTCTATGGTTAC  240

Query  301  TTGACTAATACCAAGGTTAAATTTATATTGGTCACTACTGATTTGGATGTTAGAGACACC  360
            |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct  241  TTGACTAATACCAAAGTTAAATTTATATTGGTCACTACTGATTTGGATGTTAGAGACACC  300

Query  361  GATGTGAGAAGTTTCTTCAGGAAGTTCCATGCTGCTTACGTTGATGCAGTCTCAAACCCC  420
            ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| 
Sbjct  301  GATGTGAGAAGTTTCTTCAGGAAGTTCCATGCTGCCTACGTTGATGCAGTCTCAAACCC-  359

Query  421  TTTC-ATGTCCCTGGCAAAAAGATAACCTCGAGAACCTTTGCGCAAACTGTAAGCAACAT  479
            |||| ||||||||||||||||||||||||| ||||||||||| |||||||||||||||||
Sbjct  360  TTTCCATGTCCCTGGCAAAAAGATAACCTCAAGAACCTTTGCACAAACTGTAAGCAACAT  419

Query  480  CGTTGGATCGTACGGTTTGAACTGACCTTCTCTTATAAGTTGCTT  524
            ||||||||||||||||||||||||||| |||||||| ||||||||
Sbjct  420  CGTTGGATCGTACGGTTTGAACTGACCCTCTCTTATTAGTTGCTT  464



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 24894264801


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5