BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G20980.1
Length=1531
Score E
Sequences producing significant alignments: (Bits) Value
Ahg480950 jgi|Araly1|480950|fgenesh2_kg.4__10__AT2G20980.1 1969 0.0
> Ahg480950 jgi|Araly1|480950|fgenesh2_kg.4__10__AT2G20980.1
Length=1455
Score = 1969 bits (1066), Expect = 0.0
Identities = 1236/1315 (94%), Gaps = 23/1315 (2%)
Strand=Plus/Plus
Query 1 ACGAAATTCAGTCTCCCG-CCCAC---GAG--ATGTTGTTTTGTGTTCTTGTGCATCGCT 54
|||||||||||||||||| ||||| ||| ||||||||||||||||||| || |||||
Sbjct 1 ACGAAATTCAGTCTCCCGCCCCACAAAGAGCAATGTTGTTTTGTGTTCTTGAGCTTCGCT 60
Query 55 ATTGGATCGTGAAATTG-AAAAATGGAAAACGACCAAGAGGATCTTGAAT-TGCTTCTGT 112
|||||||| ||||| | ||||||||||||||||||||||||||||| || |||||||||
Sbjct 61 GTTGGATCGAGAAATCGAAAAAATGGAAAACGACCAAGAGGATCTTG-ATCTGCTTCTGT 119
Query 113 CTCTTGACGATAGGGTTCTCGAAACTCCTCCTGGTTCTCCTTCTGCTGCACCCGGATATC 172
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 120 CTCTTGACGATAGGGTTCTCGAAACTCCTCCTGGTTCTCCTTCTGCTGCACCCGGATATC 179
Query 173 TCACGGATGATGAATCCCCCAAGCGTAGGGGTCACTCTGACTTGTCTGACTTCAGAAGTG 232
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 180 TCACGGATGATGAATCCCCCAAGCGTAGGGGTCACTCTGACTTGTCTGACTTCAGAAGTG 239
Query 233 TTGTTCAAGATTGCATTGACTATAATCCTAAACCAATCGCCAAAAACACTAAACCCAAAG 292
||||||||||||||||||||||| ||||||||||| ||||||||||||||||| | ||||
Sbjct 240 TTGTTCAAGATTGCATTGACTATGATCCTAAACCAGTCGCCAAAAACACTAAATCTAAAG 299
Query 293 GCTCCAACAACTCCAATACCAATGACATTGAGAAGTTTTCTGGCTTGCGCATTAGGAATC 352
|||| |||||||||||| |||| ||| |||| ||||||||||||||||||||||||||||
Sbjct 300 GCTCTAACAACTCCAATGCCAACGACCTTGACAAGTTTTCTGGCTTGCGCATTAGGAATC 359
Query 353 AATTACTTAGCCCTGCAGAGATAAGTGATCTGTTTTCAGATATCCGTTTCGTTCGATTGC 412
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 360 AATTACTTAGCCCTGCAGAGATAAGTGACCTGTTTTCAGATATCCGTTTCGTTCGATTGC 419
Query 413 CAACAATAAAGAACTTGCTAATGGGTGACAAACTCTCTGGCTGCTGGGCGACAATGGGAG 472
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 420 CAACAATTAAGAACTTGCTAATGGGTGACAAACTCTCTGGCTGCTGGGCGACAATGGGAG 479
Query 473 TGATAACAGAGAAAGGACAACCCAAAACAAGCTCCATTGGGCAGGCTTATGGTATATGGA 532
| | ||||||||||||||||||||||||||||||||||| ||| |||||||||||||||
Sbjct 480 TTCTTACAGAGAAAGGACAACCCAAAACAAGCTCCATTGGTCAGCCTTATGGTATATGGA 539
Query 533 AGATCGGTAGCTTAAATGAAAACAATGTCTCCTTGTTCTTGTTTGGTGATGCTTACAAAA 592
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 540 AGATCGGTAGCTTAAATGAAAACACTGTCTCCTTGTTCTTGTTTGGTGATGCTTACAAAA 599
Query 593 AGAATGAGACAGAAAAGGCAGGAACGGTTTTCGGTCTGTTTAATTGCTCACTTCGCAAGG 652
|||||||||||||||| || |||||||||||||||||||||||||||||| |||||||||
Sbjct 600 AGAATGAGACAGAAAAAGCGGGAACGGTTTTCGGTCTGTTTAATTGCTCAGTTCGCAAGG 659
Query 653 ACAATGGGGGACGTGAGTTCTCATTGAGTGTCAACTCTGCTAAACAAATGGTTAAACTGG 712
|||| ||||||||||| ||||||||||||||||||||||||||||||||||| |||||||
Sbjct 660 ACAAAGGGGGACGTGACTTCTCATTGAGTGTCAACTCTGCTAAACAAATGGTAAAACTGG 719
Query 713 GGGTTTCAGCTGATTATGGAGTCTGCACAGCAAAGCGGAAAGATGGAACAACTTGTACAT 772
||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 720 GGGTTTCGGCTGATTATGGAGTCTGCACAGCGAAGCGGAAAGATGGAACAACTTGTACAT 779
Query 773 CTGTTGTAAACAAGCGCCAAGGAGCATTCTGCAAGATTCATAAACTGAATGCATCAGACA 832
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 780 CTGTTATAAACAAGCGCCAAGGAGCATTCTGCAAGATTCATAAACTGAATGCATCAGACA 839
Query 833 AATTTGCTACAATGAGAACTGAACTCAAAGGAGGGAACTTGAGAACAGCGTTCAGAGATC 892
|||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||
Sbjct 840 AATTTGCTACAATGAGAACTGAACTCAAAGGAGGGAACTTGAGAACTGCTTTCAGAGATC 899
Query 893 -TAAAATCGCAAGGGATTTACACAGTTGAGCCACCAGCAGATAGAAGCGGAAACAAAAAG 951
|||| || |||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 900 CTAAA-TCCCAAGGGATTTACACCGTTGAGCCACCAGCAGATAGAAGCGGAAACAAAAAG 958
Query 952 ACCACTCAGCCTGTTCGAGTGCTATCAGTGGAAGGTCTCCGAAAGGCTCTAAGTGGCGCG 1011
||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||| |
Sbjct 959 GCCACTCAGCCTGTTCGAGTACTATCAGTGGAAGGTCTTCGAAAGGCTCTAAGTGGCGTG 1018
Query 1012 GATAAAGTGACCCCTAATGTACACTCACAAGGAATACGTTTCTTGAACGAGATGGCCAGA 1071
||||||||||||||||| ||||||||||| |||||||||||| |||| ||||||||||||
Sbjct 1019 GATAAAGTGACCCCTAACGTACACTCACAGGGAATACGTTTCCTGAATGAGATGGCCAGA 1078
Query 1072 CAAAAGGCATCAAAGAACGTAAACAAGAAATCTGAAGCTGTGAATAAGTCGACAGAGAAG 1131
|| |||| ||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1079 CAGAAGGTTTCAAAGAACGTAAACAAGAAATCTGAAGCTGTGAATAAGTCTACAGAGAAG 1138
Query 1132 AGGAAAGCATCAACGAAAGAAACACAAGTAAATGGTGAGCCAAAGAGAAAGAAAACAGAG 1191
||||||||||| || |||||||||||||| || |||||||||||||||||||||||||||
Sbjct 1139 AGGAAAGCATCGACAAAAGAAACACAAGTTAAGGGTGAGCCAAAGAGAAAGAAAACAGAG 1198
Query 1192 CACAGGAAGGAAACTCCCGAGATTTCCACCGGAAAAATGATGCTCCTAGATTTCTGCAGC 1251
||||||| |||||| || ||| | |||| ||||| ||||||| |||||||||
Sbjct 1199 CACAGGAGGGAAACACC--AGA--------G-AAAA-TGATGGTCCTAGACTTCTGCAGC 1246
Query 1252 TCTGACGAAGAATGACTCCTCAATAGACAGACATTGTCAAACAGGTACTCAGGCC 1306
||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1247 TCTGACGAAGAATGACTCCTCAACAGACAGACATTGTCAAACAGGTACTCAGGCC 1301
Score = 217 bits (117), Expect = 2e-55
Identities = 145/158 (92%), Gaps = 3/158 (2%)
Strand=Plus/Plus
Query 1370 GCCGGTTTATTCAATATTGAGATAGA-TTTTGTGGTTCTCAAGATTAGTCTTGAAACCGG 1428
||| |||||||| || |||||||||| ||||||||||||||| |||||||||||||||||
Sbjct 1299 GCC-GTTTATTCGATGTTGAGATAGACTTTTGTGGTTCTCAATATTAGTCTTGAAACCGG 1357
Query 1429 CAAAACAAATATCCGTCATGCAAAAAACCTTCCATTTCAACCAAAATATATAGATG-GAC 1487
||||||||||||| ||||||||||||||||| ||||| ||||||||||||||||| |||
Sbjct 1358 CAAAACAAATATCAGTCATGCAAAAAACCTTTCATTTTAACCAAAATATATAGATTTGAC 1417
Query 1488 ACATTTATTTAATGCATCAAGCAGTACCATATATATAT 1525
|||||| ||||| |||||||||||||| ||||||||||
Sbjct 1418 ACATTTGTTTAACGCATCAAGCAGTACTATATATATAT 1455
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 57325818725
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5