BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT2G20990.3 Length=2222 Score E Sequences producing significant alignments: (Bits) Value Ahg480951 jgi|Araly1|480951|fgenesh2_kg.4__11__AT2G20990.1 1561 0.0 > Ahg480951 jgi|Araly1|480951|fgenesh2_kg.4__11__AT2G20990.1 Length=1967 Score = 1561 bits (845), Expect = 0.0 Identities = 1040/1126 (92%), Gaps = 46/1126 (4%) Strand=Plus/Plus Query 1071 GAGCAAATCAAGGATCAAGTTGCGAACATGTATCTCTGGCCTAAGACCCTTGTAGTTCCA 1130 ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 886 GAGCAAATCAAGGATCAAGTTGCGAACATGTATCTCTGGCCGAAGACCCTTGTAGTTCCG 945 Query 1131 ATCCTTGACCCTGC-AAAGGCGTTCAGAAGGCCTGTTGGAATTGTCCATGTGAAAGTTGT 1189 |||||||||||||| ||| || |||||||||||||||||||| |||||||| |||||||| Sbjct 946 ATCCTTGACCCTGCGAAA-GCATTCAGAAGGCCTGTTGGAATCGTCCATGTAAAAGTTGT 1004 Query 1190 GAGGGCTGTGGGGCTGAGGAAAAAAGATCTGATGGGCGGGGCAGATCCATTCGTGAAAAT 1249 || ||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||| Sbjct 1005 GAAGGCTGTGGGGCTGAGGAAAAAAGATCTGATGGGTGGGGCAGATCCATACGTGAAAAT 1064 Query 1250 CAAGCTCTCTGAAGATAAGATTCCTTCTAAGAAGACAACAGTTAAACACAAGAATTTGAA 1309 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1065 CAAGCTCTCTGAAGATAAGATTCCTTCTAAGAAGACAACAGTTAAACACAAGAATTTGAA 1124 Query 1310 TCCTGAATGGAATGAGGAGTTCAAATTCTCGGTCAGAGATCCCCAGACTCAGGTTCTAGA 1369 |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1125 TCCTGAATGGAACGAGGAGTTCAAATTCTCGGTCAGAGATCCCCAGACTCAGGTTCTAGA 1184 Query 1370 GTTCAGTGTGTATGACTGGGAACAGGTTGGGAATCCCGAGAAGATGGGTATGAATGTATT 1429 ||||| ||||||||||||||||||||||||||| | ||| |||||||||||||||||||| Sbjct 1185 GTTCAATGTGTATGACTGGGAACAGGTTGGGAAGCACGATAAGATGGGTATGAATGTATT 1244 Query 1430 AGCTCTGAAAGAAATGGTGCCTGACGAACATAAAGCATTCACCTTGGAACTGCGTAAGAC 1489 |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 1245 AGCTCTGAAAGAAATGGTGCCTAACGAACATAAAGCATTCACCTTGGAACTGCGTAAGAC 1304 Query 1490 TCTGGACGGCGGTGAAGATGGGCAGCCTCCTGACAAGTATAGGGGGAAGCTGGAGGTTGA 1549 |||||||||||||||||| |||||| || |||||||||||||||||||||||||| || Sbjct 1305 TCTGGACGGCGGTGAAGAAGGGCAGACT---GACAAGTATAGGGGGAAGCTGGAGGTCGA 1361 Query 1550 ACTCTTGTATAAGCCATTCACGGAGGAAGAAATGCCCAAAGGCTTTGAAGAAACGCAAGC 1609 ||||||||||||||||||||||||||||||||||| || || | | | | | Sbjct 1362 ACTCTTGTATAAGCCATTCACGGAGGAAGAAATGC--AAT--CTGT-A-----C--A-G- 1407 Query 1610 CGTGCAGAAAGCTCCAGAAGGCACACCGGCTGCTGGAGGAATGCTTGTGGTAATAGTGCA 1669 | || ||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 1408 -----A-AA-GCTCCAGAAGGCACACCGGCTACTGGAGGAATGCTTGTGGTAATAGTGCA 1460 Query 1670 TTCGGCTGAGGATGTTGAAGGAAAGCACCATACCAATCCTTACGTGCGCATCTATTTCAA 1729 ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 1461 TTCGGCTGAGGATGTTGAAGGAAAGCACCATACGAATCCTTACGTGCGCATCTATTTCAA 1520 Query 1730 AGGAGAAGAGAGAAAAACAAAGCACGTGAAGAAGAACAGAGACCCAAGGTGGAATGAGGA 1789 ||| || ||||||||||| ||||| ||||||||||||||||||||||||||||||||||| Sbjct 1521 AGGGGAGGAGAGAAAAACGAAGCAAGTGAAGAAGAACAGAGACCCAAGGTGGAATGAGGA 1580 Query 1790 GTTCACCTTTATGCTCGAGGAGCCTCCAGTCCGTGAGAAGCTGCACGTTGAAGTGCTGAG 1849 |||| |||| |||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 1581 GTTCTCCTTCATGCTCGAGGAGCCTCCAGTCCGTGAGAAGCTGCACGTGGAAGTGCTGAG 1640 Query 1850 CACCTCTTCCAGGATAGGTCTATTGCATCCCAAGGAAACACTGGGGTATGTGGATATTCC 1909 ||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||| Sbjct 1641 CACCTCTTCCAGGATAGGTTTATTGCATCCCAAGGAAACACTGGGGTACGTGGATATTCC 1700 Query 1910 AGTGGTGGACGTGGTGAACAACAAAAGGATGAATCAGAAGTTTCACCTTATTGATTCTAA 1969 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1701 GGTGGTGGACGTGGTGAACAACAAAAGGATGAATCAGAAGTTTCACCTTATTGATTCTAA 1760 Query 1970 GAACGGAAAGATCCAAATCGAGCTCGAGTGGCGAACTGCCTCTTGATTTCTGAGTT-GAT 2028 |||||||||||||||||||||||| |||||||||||||||||||||||||||| || | | Sbjct 1761 GAACGGAAAGATCCAAATCGAGCTTGAGTGGCGAACTGCCTCTTGATTTCTGA-TTCGTT 1819 Query 2029 TCGAGAACAAACAAAGAGATAATTGGTTTGATGTTGTTAAAAACTATGTGTTGTTGTACA 2088 |||||||||||||||||||| ||||||||||| | | ||| | || ||| Sbjct 1820 TCGAGAACAAACAAAGAGATCATTGGTTTGAT------A-----T-TGT-T-GT---ACA 1862 Query 2089 AAATGGGCTTTAACTCTTAAAAACCAACATTCAGATTTGCAGAGCCTTCTTTTATTTGGA 2148 ||||||||||||||||| |||| ||| ||||||||||||||||||||||||||||||||| Sbjct 1863 AAATGGGCTTTAACTCTGAAAA-CCATCATTCAGATTTGCAGAGCCTTCTTTTATTTGGA 1921 Query 2149 TTTGTGTGTCTTCGACTTCTCTTTTCTATGAAATTCGGTAGTGTGA 2194 ||||||||| ||| ||||||||| ||||||| |||||||||||||| Sbjct 1922 TTTGTGTGTTTTCAACTTCTCTTCTCTATGATATTCGGTAGTGTGA 1967 Score = 1203 bits (651), Expect = 0.0 Identities = 690/709 (97%), Gaps = 2/709 (0%) Strand=Plus/Plus Query 250 TTGTTGGATCTGAAACGGAAATCAAAATGGGCTTTTTCAGTACGATACTAGGATTTTGTG 309 ||||||||||||||||||||||||| ||||| |||||||||||||||||||| ||||||| Sbjct 179 TTGTTGGATCTGAAACGGAAATCAAGATGGGTTTTTTCAGTACGATACTAGGGTTTTGTG 238 Query 310 GATTTGGAGTTGGGATTTCAT-TGGGACTTGTTATTGGTTACGTTCTCTTCGTCTACTTG 368 ||||||||||||||||||| | ||||||||||||||||||||||||| |||||||||||| Sbjct 239 GATTTGGAGTTGGGATTTC-TCTGGGACTTGTTATTGGTTACGTTCTATTCGTCTACTTG 297 Query 369 CTCCCCAACGACGTCAAGGATCCTGAAATTCGTTCAATAGCTGACCAAGATCCCAAAGCT 428 || ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 298 CTGCCCAACGACGTCAAGGATCTTGAAATTCGTTCAATAGCTGACCAAGATCCCAAAGCT 357 Query 429 ATGCTACGGATGCTTCCAGAGATACCTCTATGGGTCAAAAATCCGGATTTCGATCGTGTT 488 |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 358 ATGCTACGGATGCTTCCAGAGATACCTCTATGGGTCAAAAATCCCGATTTCGATCGTGTT 417 Query 489 GACTGGATAAACAGATTTCTCGAGTACATGTGGCCTTATCTCGACAAGGCCATATGTAAG 548 |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 418 GACTGGATTAACAGATTTCTCGAGTACATGTGGCCTTATCTCGACAAGGCCATATGTAAG 477 Query 549 ACTGCAAAGAATATAGCAAAACCGATCATTGAGGAGCAGATACCAAAGTACAAGATTGAC 608 |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 478 ACTGCAAAGAATATAGCAAAGCCGATCATTGAGGAGCAGATACCAAAGTACAAGATTGAC 537 Query 609 TCTGTTGAATTTGAAACACTTACTCTAGGCTCTTTACCCCCTACATTTCAAGGGATGAAA 668 ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 538 TCTGTTGAATTTGAAACACTTACACTAGGCTCTTTACCCCCTACATTTCAAGGGATGAAA 597 Query 669 GTTTATCTCACGGATGAGAAAGAGTTGATTATGGAACCATGCTTGAAATGGGCCGCAAAT 728 |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 598 GTTTATCTCACGGATGAGAAAGAGTTGATTATGGAACCATGCTTGAAATGGGCCTCAAAT 657 Query 729 CCCAATATCTTGGTTGCCATCAAGGCATTTGGGTTGAAGGCAACAGTTCAGGTGGTCGAT 788 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 658 CCCAATATCTTGGTTGCCATCAAGGCATTTGGGTTGAAGGCAACAGTTCAGGTGGTCGAT 717 Query 789 CTGCAAGTTTTTGCTCAGCCTCGTATCACTCTCAAGCCATTAGTTCCAAGTTTCCCTTGT 848 |||||||||||||| ||||| ||||||||||||||||||||||| |||||||| |||||| Sbjct 718 CTGCAAGTTTTTGCACAGCCCCGTATCACTCTCAAGCCATTAGTCCCAAGTTTTCCTTGT 777 Query 849 TTTGCCAATATCTATGTGTCTCTTATGGAGAAGCCACATGTTGATTTTGGACTGAAGCTT 908 |||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 778 TTTGCCAACATCTATGTGTCTCTTATGGAGAAGCCACACGTTGATTTTGGACTGAAGCTT 837 Query 909 GGTGGAGCAGATCTTATGTCAATCCCTGGCCTCTACAGATTTGTTCAGG 957 ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 838 GGTGGAGCAGATCTTATGTCAATCCCTGGCCTCTACAGATTTGTTCAGG 886 Score = 196 bits (106), Expect = 5e-49 Identities = 158/180 (88%), Gaps = 15/180 (8%) Strand=Plus/Plus Query 27 TTGCTTGCCTTCTGGGCTTCACGATTCTCACGACATCTGTTTATCTTCTCCGATTTCCAC 86 |||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1 TTGCTTGCCTCCAGGGCTTCACGATTCTCACGACATCTGTTTATCTTCTCCGATTTCCAC 60 Query 87 GTCCATGGATCTCAGTCAATGTTCCTTAATCTCTCTTTTCGATTAGTCCAATCTCCACTA 146 ||||||||||||||||||||| ||||||||||||||| ||||||||| |||| || | | Sbjct 61 GTCCATGGATCTCAGTCAATGCTCCTTAATCTCTCTTACCGATTAGTC-AATC-CC-C-A 116 Query 147 ATCTCTGACCTCAGATCGCTTCCGACGCCG-CTGAACTGTGTCCGTCTTGATCTGTGTTT 205 ||| || || | | ||||||||||| | ||||| ||||||||||||||||||||| Sbjct 117 --CTCAGA--TC-G---G-TTCCGACGCCGGC-GAACTCTGTCCGTCTTGATCTGTGTTT 166 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 83646178020 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5