BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G21140.1
Length=1265
Score E
Sequences producing significant alignments: (Bits) Value
Ahg932036 jgi|Araly1|932036|scaffold_400024.1 1310 0.0
> Ahg932036 jgi|Araly1|932036|scaffold_400024.1
Length=1040
Score = 1310 bits (709), Expect = 0.0
Identities = 933/1036 (90%), Gaps = 36/1036 (3%)
Strand=Plus/Plus
Query 42 AACAAAGTGAATCTCATGAGGATATTACCGAAAAGCGGAGGAGGTGCTCTTT-GCCTCCT 100
||| ||| |||||| |||||||||||||| |||||||| ||| |||| |||| |||||||
Sbjct 7 AAC-AAGAGAATCTGATGAGGATATTACCAAAAAGCGGCGGAAGTGC-CTTTGGCCTCCT 64
Query 101 CTTTGTGTTTGCTCTTTGTTCGGTGGCTCATTCCCTTAGCTGTGACGTCAAGGTTGTTGG 160
||||||||||||||| || ||||||||||||||||||||| ||||||||||||| |||||
Sbjct 65 CTTTGTGTTTGCTCTCTGCTCGGTGGCTCATTCCCTTAGCCGTGACGTCAAGGTCGTTGG 124
Query 161 CGATGTCGAAGTCATTGGCTACTCAGAAATCAGCAAAATCAAGATCCCCAATGCATTCTC 220
||| |||| ||| ||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 125 GGATATCGAGGTCGTTGGCTACTCAGACATCAGCAAAATCAAGATCCCCAATGCATTCTC 184
Query 221 AGGACTTCGAGTTACGATAGAATGCAAGGCGGCCGATTCAAAAGGCCATTTTGTAACGAG 280
|||||| ||||| ||||||||||||||||||||||||||||||||||||||||| || ||
Sbjct 185 AGGACTCCGAGTAACGATAGAATGCAAGGCGGCCGATTCAAAAGGCCATTTTGTTACAAG 244
Query 281 GGGAAGCGGAGAAGTGGACGAAACAGGAAAGTTTCATCTTAATATTCCTCATGACATTGT 340
|||||||||||||| ||||||||||||||||||||||| |||||||||||||| |||||
Sbjct 245 AGGAAGCGGAGAAGTTGACGAAACAGGAAAGTTTCATCTCAATATTCCTCATGATATTGT 304
Query 341 CGGTGATGACGGAACTCTAAAAGAAGCTTGCTATGCTCATCTTCAAAGTGCCTTCGGCAA 400
|||||| ||||||||||| |||||||| ||||||||||| ||||||||||||| ||||||
Sbjct 305 CGGTGACGACGGAACTCTGAAAGAAGCCTGCTATGCTCAACTTCAAAGTGCCTCCGGCAA 364
Query 401 CCCTTGTCCGGCCCACGATGGCCTTGAGGCCTCCAAGATCGTGTTTCTATCGAAATCCGG 460
|||||||||||||||||| ||||| |||||||| ||||||||||||||||||||||||||
Sbjct 365 CCCTTGTCCGGCCCACGACGGCCTCGAGGCCTCAAAGATCGTGTTTCTATCGAAATCCGG 424
Query 461 CCAAAACCACGTTTTGGGTCTCaaaaaaaGTCTTAAATTCTCACCAGAAGTTTGCATCTC 520
| ||||||| ||||||||||||||| ||||||||||||||||||| ||||||||||||||
Sbjct 425 CGAAAACCAAGTTTTGGGTCTCAAACAAAGTCTTAAATTCTCACCGGAAGTTTGCATCTC 484
Query 521 AAAGTTCTTTTGGCATATGCCTAAGTTCCCTTTACCTCCTCCGCTTAATCTCCCACCGTT 580
||||||||||||||||||||||||||||||||||||||| || ||||||||||| || ||
Sbjct 485 AAAGTTCTTTTGGCATATGCCTAAGTTCCCTTTACCTCCACCACTTAATCTCCCGCCATT 544
Query 581 AACGTTTCCTAAGATCAAGAAGCCTTGTCCCCCAATTTACAAACCACCGGTGGTGATCCC 640
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 545 AACGTTTCCTAAGATCAAGAAACCTTGTCCCCCAATTTACAAACCACCGGTGGTGATCCC 604
Query 641 TAAGAAGCCGTGTCCACCAAAGATTGCACATAAACCCATCTACAAGCCGCCGGTTCCCAT 700
|||||||||||||||||||||||||||||||| |||||||||||||| || || || ||
Sbjct 605 CAAGAAGCCGTGTCCACCAAAGATTGCACATAAGCCCATCTACAAGCCTCCAGTGCCTAT 664
Query 701 CTACAAGCCTCCAGTGCCTATCTACAAGCCACCAGTGGTTATCCCCAAGAAACCGTGTCC 760
||||||||| || |||||||||||||||||||||||||| |||||||||||||| |||||
Sbjct 665 CTACAAGCCGCCGGTGCCTATCTACAAGCCACCAGTGGTGATCCCCAAGAAACCATGTCC 724
Query 761 ACCAAAGATACACAAGCCCATCTACAAGCCACCCGTGCCTATCTACAAGCC--TC--CA- 815
|||||||||||||||||||||||||||||||| ||||||||||||||||| || ||
Sbjct 725 ACCAAAGATACACAAGCCCATCTACAAGCCACATGTGCCTATCTACAAGCCCATCTACAA 784
Query 816 G--T---G-G-TGATCCCAAAGAAGACATTTCCTCCACTTCACAAGCCGATCTACAAGCA 868
| | | | |||||||||| ||| ||| ||| |||||||||||||||||||||||||
Sbjct 785 GCCTCCAGTGGTGATCCCAAATAAGCCATGTCCACCACTTCACAAGCCGATCTACAAGCC 844
Query 869 CCCGGTTCCTATCTACAAACC------A---AT---C-------T--TCAAGCCGCCAGT 907
|||||| ||||||||||| || | || | | |||||||||| ||
Sbjct 845 CCCGGTGCCTATCTACAAGCCGCCGGTACCTATTTACAAACCGATCATCAAGCCGCCGGT 904
Query 908 GGTGGTGATTCCAAAGAAACCATGTCCACCACTTCCCAAGTTTCCACACTTCCCACCTAA 967
|||||||||||||||||| ||||||||||||||||||||||||||||| |||||||| ||
Sbjct 905 GGTGGTGATTCCAAAGAAGCCATGTCCACCACTTCCCAAGTTTCCACATTTCCCACCAAA 964
Query 968 ATACATTCCACACCCTAAGTTCGGAAAATGGCCTCCTTTCCCTTCTCATCCTTGATAAAG 1027
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 965 ATACATTCCACACCCTAAGTTCGGAAAATGGCCTCCTTTCCCTTCTCATCCTTGATGGAG 1024
Query 1028 ATGCAAAATCCTCTGT 1043
|| || |||| |||||
Sbjct 1025 ATACATAATCATCTGT 1040
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 47272417080
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5