BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G21170.1
Length=1368
Score E
Sequences producing significant alignments: (Bits) Value
Ahg932039 jgi|Araly1|932039|scaffold_400027.1 2030 0.0
> Ahg932039 jgi|Araly1|932039|scaffold_400027.1
Length=1186
Score = 2030 bits (1099), Expect = 0.0
Identities = 1160/1189 (98%), Gaps = 6/1189 (1%)
Strand=Plus/Plus
Query 10 ACCACCAACCCT-CTCATCGCCTCTATCTCCTCTGCTACCTTAAGCTGAGAGAGTCACAG 68
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ACCACCAACCCTCCTCATCGCCTCTATCTCCTCTGCTACCTTAAGCTGAGAGAGTCACAG 60
Query 69 TCTCGTCTCTATCTCTCCTCTTTGCC--TTTTTCCACTCACTACACGCCAAACCCGACGA 126
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 61 TCTCGTCTCTATCTCTCCTCTTTGCCTTTTTTTCCACTCACTACACGCCAAACCCGACGA 120
Query 127 CATGGCAGCTACCTCTCTCACTGCCCCTCCTTCTTTCTCCGGTCTCCGCCGCATTTCTCC 186
||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 121 CATGGCAGCGACCTCTCTCACTGCCCCTCCTCCTTTCTCCGGTCTCCGCCGCATTTCTCC 180
Query 187 CAAGCTCGACGCTGCCGCCGTCTCCTCCCACCAATCCTTCTTCCACCGCGTCAATTCCTC 246
||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 CAAGCTCGA--C-GCCGCCGTCTCCTCCCACCAATCCTTCTTCCACCGCGTCAATTCCTC 237
Query 247 TACCCGTCTCGTTTCTTCCTCTTCTTCTTCTCATCGCTCCCCCAGAGGTGTTGTTGCCAT 306
||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||
Sbjct 238 TACCCGTCTCGTTTCTTCCTCTTCTTCTTCTCATCGCTCTCCCAGAGGCGTTGTTGCCAT 297
Query 307 GGCTGGATCCGGAAAGTTTTTCGTTGGAGGAAACTGGAAGTGTAACGGGACTAAGGACTC 366
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 298 GGCTGGATCCGGAAAGTTTTTCGTTGGAGGAAACTGGAAATGTAACGGGACTAAGGACTC 357
Query 367 CATCGCCAAGCTTATCTCCGATCTCAACAGTGCAACCTTGGAAGCAGATGTAGATGTTGT 426
||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 358 CATCGCCAAGCTTGTCTCTGATCTCAACAGTGCAACCTTGGAAGCAGATGTAGATGTTGT 417
Query 427 TGTGTCACCTCCATTTGTCTACATCGACCAGGTCAAATCCTCGTTGACAGACCGTATTGA 486
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 418 TGTGTCACCTCCATTTGTCTACATCGACCAGGTCAAATCCTCGTTGACAGACCGTATTGA 477
Query 487 CATATCAGGTCAGAACTCTTGGGTTGGGAAAGGTGGAGCCTTCACTGGTGAAATCAGCGT 546
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 478 CATATCAGGTCAGAACTCTTGGGTTGGAAAAGGTGGAGCCTTCACTGGTGAAATCAGCGT 537
Query 547 GGAACAGCTCAAAGACCTTGGCTGCAAGTGGGTCATTCTTGGGCATTCCGAACGGAGACA 606
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 538 GGAACAGCTCAAAGACCTTGGCTGCAAGTGGGTCATTCTTGGGCATTCCGAACGGAGACA 597
Query 607 TGTCATCGGAGAAAAAGATGAGTTTATCGGGAAGAAAGCTGCATATGCATTGAGTGAGGG 666
|||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||
Sbjct 598 TGTCATCGGAGAAAAAGATGAGTTTATCGGGAAGAAAGCTGCTTACGCATTGAGTGAGGG 657
Query 667 TCTTGGAGTGATAGCTTGTATTGGGGAAAAGCTAGAAGAGAGGGAAGCAGGCAAGACGTT 726
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||
Sbjct 658 TCTTGGAGTGATAGCTTGTATTGGGGAAAAGCTAGAAGAGAGGGAAGCAGGCAGGACATT 717
Query 727 TGATGTTTGCTTCGCGCAACTGAAGGCGTTTGCTGATGCTGTGCCTAGCTGGGACAATAT 786
||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||
Sbjct 718 TGATGTTTGCTTCGCGCAACTGAAGGCGTTTGCTGTTGCTGTGCCTAGCTGGGAAAATAT 777
Query 787 AGTTGTTGCATACGAGCCTGTATGGGCAATTGGAACTGGTAAAGTTGCATCTCCTCAGCA 846
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 778 AGTTGTTGCATACGAGCCTGTTTGGGCAATTGGAACTGGTAAAGTTGCATCTCCTCAGCA 837
Query 847 AGCACAAGAAGTCCATGTAGCTGTCCGCGGTTGGCTAAAGAAGAATGTCTCTGAGGAAGT 906
||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||
Sbjct 838 AGCACAAGAAGTCCATGTAGCTGTCCGTGGTTGGCTAAAAAAGAATGTCTCTGAGGAAGT 897
Query 907 TGCTTCCAAAACGAGAATCATATATGGAGGTTCTGTCAATGGAGGCAACAGTGCAGAGCT 966
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 898 CGCTTCCAAAACAAGAATCATATATGGAGGTTCTGTCAATGGAGGCAACAGTGCAGAGCT 957
Query 967 TGCCAAAGAAGAAGACATTGATGGATTTCTTGTTGGTGGTGCCTCCTTGAAGGGTCCTGA 1026
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 958 TGCCAAAGAAGAAGACATTGATGGATTTCTTGTTGGCGGTGCCTCCTTGAAGGGTCCTGA 1017
Query 1027 GTTTGCAACCATTGTGAACTCAGTCACGTCGAAGAAAGTTGCTGCTTGATTGAGAACTAT 1086
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1018 GTTTGCAACCATTGTGAACTCAGTCACGTCGAAGAAAGTTGCTGCTTGATTGAGAACTAT 1077
Query 1087 CAGTAACGGAAATCGCTAGTCTCCATGGAACAGATGAGATGAGAAATAAAAGGGAGGTTA 1146
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1078 CAGTAACGGAAATCGCTAGTCTCCATGGAACAGATGAGATCAGAAATAAAAGGGAGGTTA 1137
Query 1147 GCGACCttgttgttgttgttgtgttCTTACATCTTCTTCTTGAACTAAT 1195
|||||||||||||||||||||||||||||| |||||||| |||||||||
Sbjct 1138 GCGACCTTGTTGTTGTTGTTGTGTTCTTACTTCTTCTTCGTGAACTAAT 1186
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 51199077531
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5