BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G21220.1
Length=488
Score E
Sequences producing significant alignments: (Bits) Value
Ahg932046 jgi|Araly1|932046|scaffold_400034.1 560 3e-159
Ahg943849 jgi|Araly1|943849|scaffold_700078.1 326 1e-88
> Ahg932046 jgi|Araly1|932046|scaffold_400034.1
Length=356
Score = 560 bits (303), Expect = 3e-159
Identities = 337/353 (95%), Gaps = 3/353 (1%)
Strand=Plus/Plus
Query 36 CAAGAAACAAT-AACTAGCAATGGCGGTTAAGAGATCTTCAAAGCTAACACAAACCGCAA 94
||||||||||| ||||| |||||||||||||||||||| | |||||||||||||||||||
Sbjct 1 CAAGAAACAATAAACTAACAATGGCGGTTAAGAGATCTCCTAAGCTAACACAAACCGCAA 60
Query 95 TGCTGAAGCAAATCCTCAAGAGATGCTCGAGCTTGGCCAAGAATCAATGCTATGATGAGG 154
|||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||
Sbjct 61 TGCTGAAGCAAATCCTCAAGAGATGCTCTAGCTTGGCTAAGAATCAATGCTATGATGAGG 120
Query 155 ATG-GTCTGCCTGTAGACGTACCAAAGGGTCATTTCCCGGTCTATGTAGGCGAAAAGAGG 213
| | | |||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 121 A-GAGCCTGCCTGTAGACGTACCAAAGGGTCATTTCGCGGTCTATGTAGGCGAAAAGAGG 179
Query 214 AGCCGGTACATCGTACCCATATCCTTCTTGACTCATCCTAAGTTCAAGAGCTTGCTTCAA 273
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 180 AGCCGGTACATCGTACCCATATCCTTCTTGACTCATCCTAAGTTCAAGAGCTTGCTTCAA 239
Query 274 CAGGCAGAAGAAGAGTTCGGGTTCAATCATGACATGGGACTCACTATTCCTTGTGAAGAA 333
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 240 CAGGCAGAGGAAGAGTTCGGGTTCAATCATGACATGGGACTCACTATTCCTTGTGAAGAA 299
Query 334 GTTGTTTTCCGCTCTTTAACATCCATGATCGGATGAGGGAGTGGgagagaaag 386
||||||||||||||| |||||||||||||| |||||| |||||| ||| ||||
Sbjct 300 GTTGTTTTCCGCTCTCTAACATCCATGATCCGATGAGTGAGTGGAAGACAAAG 352
> Ahg943849 jgi|Araly1|943849|scaffold_700078.1
Length=358
Score = 326 bits (176), Expect = 1e-88
Identities = 283/333 (85%), Gaps = 14/333 (4%)
Strand=Plus/Plus
Query 47 AACT-AGCAATGGCGGTTAAGAGATCTTCAAAGCTAACACAAACCGCAATGCTGAAGCAA 105
|||| | |||||||||| |||||||||||||||||||||||||| |||||||| ||||||
Sbjct 12 AACTAAACAATGGCGGTAAAGAGATCTTCAAAGCTAACACAAACAGCAATGCTAAAGCAA 71
Query 106 ATCCTCAAGAGATGCTCGAGCTT-GGCCAAGAATCAATGCTATGATGAGGATGGTCTGCC 164
||||||||||||||||||||||| ||| ||||| |||||||| || ||||| ||||| ||
Sbjct 72 ATCCTCAAGAGATGCTCGAGCTTAGGC-AAGAAACAATGCTACGACGAGGAAGGTCTCCC 130
Query 165 TGTAGACGTACCAAAGGGTCATTTCCCGGTCTATGTAGGCGAAAAGAGGA-GCCGGTACA 223
| | |||||||||||||| ||||| ||||| || |||||||||||| | | | ||||||
Sbjct 131 TCTTGACGTACCAAAGGGACATTTTCCGGTTTACGTAGGCGAAAAGCGAACGA-GGTACA 189
Query 224 TCGTACCCATATCCTTCTTGACTCATCCT-AAGTTCAAGAGC-TTGCTTCAACAGGCAGA 281
||||||| || ||||||||||||||||| || ||| || | || |||||||| |||||
Sbjct 190 TCGTACCAATTTCCTTCTTGACTCATCCAGAA-TTCCTGATCCTT-CTTCAACAAGCAGA 247
Query 282 AGAAGAGTTCGGGTT-CAATCATGACATGGGA---CTCACTATTCCTTGTGAAGAAGTTG 337
||||||||||| || | || ||||||||| |||||||| |||||||||||||| |
Sbjct 248 GGAAGAGTTCGGCTTTCGC-CACGACATGGGAGGACTCACTATCCCTTGTGAAGAAGTCG 306
Query 338 TTTTCCGCTCTTTAACATCCATGATCGGATGAG 370
|||| | |||| |||||||||||||| ||||||
Sbjct 307 TTTTTCTCTCTCTAACATCCATGATCAGATGAG 339
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 17704193296
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5