BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G21280.1
Length=1261
Score E
Sequences producing significant alignments: (Bits) Value
Ahg932055 jgi|Araly1|932055|scaffold_400043.1 1703 0.0
> Ahg932055 jgi|Araly1|932055|scaffold_400043.1
Length=1094
Score = 1703 bits (922), Expect = 0.0
Identities = 1038/1093 (95%), Gaps = 11/1093 (1%)
Strand=Plus/Plus
Query 9 CGATCAGTTTCAGCGAAACGATGGAGCTTCTCTGCTCACCAACGTCTCTTTCCTCCTCCT 68
|||||||||||||||||| ||||||| ||||||||||| |||||||||||||||||||||
Sbjct 1 CGATCAGTTTCAGCGAAAGGATGGAGATTCTCTGCTCAACAACGTCTCTTTCCTCCTCCT 60
Query 69 TCGCTCTCTCTTCTGCTCTTTTAGTCCCTCGTTCGTTCTCC-ATGCCAGGGACAAGGAGA 127
|||||||||||||||||||||| ||||||| || || || |||||||||||||||||
Sbjct 61 TCGCTCTCTCTTCTGCTCTTTTCGTCCCTCCATCAATC-CCTGTGCCAGGGACAAGGAGA 119
Query 128 TTCATGGTTCTGTGTAG-T--------TCCCAGAAGGAAAGTCAGATGACAGTGTCAGTA 178
||||||||||||||||| | ||||||||||||| |||||||||||||||||||
Sbjct 120 TTCATGGTTCTGTGTAGTTCCGAGAAATCCCAGAAGGAAAATCAGATGACAGTGTCAGTA 179
Query 179 ACTGGAGCAACTGGATTCATAGGGAGACGATTGGTTCAGAGACTTCGTGCTGATAACCAC 238
|||||||||||||||||||| |||||| ||||||| ||||||||||||||||||| |||
Sbjct 180 ACTGGAGCAACTGGATTCATTGGGAGAAAATTGGTTAAGAGACTTCGTGCTGATAATCAC 239
Query 239 GCTATCCGGGTCTTAACACGCTCTAAATCCAAAGCTGAGCAAATATTTCCTGCCAAGGAC 298
|||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||
Sbjct 240 TCTATCCGGGTCTTAACACGCTCGAAATCCAAAGCTGACCAAATATTTCCTGCCAAGGAC 299
Query 299 TTCCCAGGTATTGTGATTGCAGAAGAATCGGAGTGGAAGAACTGTGTACAAGGCTCTACT 358
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 300 TTCCCAGGTATTGTGATTGCAGAAGAATCGGAGTGGAAGAACTGTGTACAAGGCTCCACT 359
Query 359 GCTGTTGTGAACTTGGCAGGACTGCCTATTAGTACAAGGTGGTCTCCCGAGATCAAGAAA 418
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 360 GCTGTTGTGAACTTGGCAGGATTGCCTATTAGTACAAGGTGGTCTCCCGAGATCAAGAAA 419
Query 419 GAGATTAAGGGCAGCCGGATCCGTGTCACCTCCAAAGTTGTTGACTTAATCAATAATTCA 478
|||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 420 GAGATTAAAGACAGCCGGATCCGTGTCACCTCCAAAGTTGTTGACTTAATCAATAATTCA 479
Query 479 CCAGCAGAAGCTAGGCCTACCGTTCTAGTTAGCGCCACGGCTGTTGGTTACTATGGTACT 538
||||||||||| ||||||||| ||||||||||||||||||||||||||||||| ||||||
Sbjct 480 CCAGCAGAAGCCAGGCCTACCATTCTAGTTAGCGCCACGGCTGTTGGTTACTACGGTACT 539
Query 539 AGTGAGACAGGAGTATTCGACGAAAATAGTCCATCAGGGAAGGACTATCTTGCAGAGGTT 598
|||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||
Sbjct 540 AGTGAGACAGGAGTATTCGACGAAAATAGTCCATCAGGGAAGGATTATCTTGCTGAGGTT 599
Query 599 TGCAGAGAATGGGAAGGAACTGCATTGAAAGCAAATAAGGATGTTAGAGTGGCACTTATC 658
|||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||
Sbjct 600 TGCAGAGAATGGGAAGGAACTGCATTGAAAGCGAATAAAGATGTTAGAGTGGCACTTATC 659
Query 659 CGCATTGGTGTTGTTCTTGGCAAAGACGGTGGAGCTTTGGCCATGATGATACCCTTTTTC 718
||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 660 CGCATCGGTATTGTTCTTGGCAAAGACGGTGGAGCTTTGGCCATGATGATACCCTTTTTC 719
Query 719 CAAATGTTTGCTGGAGGACCTCTGGGTTCCGGACAACAATGGTTCTCTTGGATTCACGTG 778
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 720 CAAATGTTTGCTGGAGGACCTCTGGGTTCAGGACAACAATGGTTCTCTTGGATTCACGTG 779
Query 779 GATGACTTGGTGAACTTAATTTACGAGGCCCTCACTAATCCATCTTATAAAGGAGTTATT 838
|||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||
Sbjct 780 GATGACTTGGTGAACTTAATTTACGAGGCCCTCACTAATCCATCCTATCAAGGAGTTATT 839
Query 839 AATGGGACTGCGCCGAATCCGGTTAGGCTTGGGGAAATGTGCCAGCAGCTAGGCAGTGTT 898
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 840 AATGGGACTGCGCCGAATCCGGTTAGGCTTGGGGAAATGTGCCAGCAGCTAGGCAGCGTT 899
Query 899 CTTAGCCGACCATCGTGGCTACCAGTTCCTGACTTTGCACTCAAAGCTTTGCTCGGAGAA 958
|||||||||||||| ||||||||||||||||||||||||||||||||||| || ||||||
Sbjct 900 CTTAGCCGACCATCATGGCTACCAGTTCCTGACTTTGCACTCAAAGCTTTACTTGGAGAA 959
Query 959 GGTGCCACTGTAGTTCTGGAGGGACAGAAGGTATTACCTGTAAGAGCCAAAGAGCTTGGT 1018
||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 960 GGTGCCACTGTGGTTCTGGAGGGACAGAAGGTTTTACCTGTAAGAGCCAAAGAGCTTGGT 1019
Query 1019 TTTGAATTCAAGTATAAATACGTGAAGGATGCACTCAGAGCCATTATGCAATAAGGTGAC 1078
||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1020 TTTGAATTCAAATACAAATACGTGAAGGATGCACTCAGAGCCATTATGCAATAAGGTGAC 1079
Query 1079 ACACATAAGCATC 1091
|||||| | ||||
Sbjct 1080 ACACATGACCATC 1092
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 47119925412
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5